Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003385.1

Orthogroup ID

OG0001324

Physical Location & Seq

Genomic Coordinates Reverse (-)

112399 .. 113583

Gene Structure 1185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003385.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atggaggcggagaaagcaggggcatcgctggactcgctgatcgccgggttcaacagtcggatctcggagctccaagagctcgccgtcgatgccgccgtgaaggccatggagcttcaggtccaggccatcaaggaccgggttcgcgacgaaacccttgccatccccaaagcaaaaaaactgatcaatgcatcgctgaagcagcaaaagaaattgaaggatatgtcaatttatgcccccactcattttcctgaaagaatgtcgatgttgaatttggatacaaatagatgtttatttccagaaggctctcagcaaaacactggttctgggaccttcaagcttgaggaggatcctgcaccaccaccacccaaggagaaaaagggtcgttccatgccaccattgtggtttgtaagtgctgaagagctggattccttgtcatcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SKA1

Protein Analysis

146

Amino Acids

16.12

Weight (kDa)

5.92

Isoelectric Point (pI)

52.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60660
fragaria_vesca	FvH4_7g11150 FvH4_7g11150 FvH4_7g11150 FvH4_7g11150
malus_domestica	MD02G1209900.v1.1
prunus_persica	Prupe.2G138600_v2.0.a1
pyrus_communis	pycom02g17150
rosa_chinensis	RchiOBHm_Chr1g0349231 RchiOBHm_Chr1g0349241 RchiOBHm_Chr5g0028911
rosa_laevigata	RLG00000009597 RLG00000028567 RLG00000028571 RLG00000028575 RLG00000028581 RLG00000028583 RLG00000028586 RLG00000028589 RLG00000028593 RLG00000028595 RLG00000028597 RLG00000030621
rosa_multiflora	Rmu_sc0000827.1_g000037 Rmu_sc0002914.1_g000030 Rmu_sc0003385.1_g000016 Rmu_sc0003385.1_g000026 Rmu_sc0006415.1_g000020 Rmu_sc0016526.1_g000001 Rmu_ssc0000150.1_g000012
rosa_roxburghii	Rroxscaffold_4G00305770 Rroxscaffold_4G00305780 Rroxscaffold_4G00305890 Rroxscaffold_4G00305910 Rroxscaffold_4G00305970 Rroxscaffold_4G00306010 Rroxscaffold_4G00306040
rosa_rugosa	Rorug01G0201500 Rorug01G0201900 Rorug05G0111400 Rorug05G0239700
rosa_samantha	Rh1AG218700 Rh1AG219100 Rh1AG219600 Rh1CG203200 Rh1CG204600 Rh1CG204800 Rh3AG070800 Rh5AG203700 Rh5BG202000
rosa_wichuraiana	Rw0G019560 Rw1G018600 Rw1G018630 Rw5G018440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	144
AciI	CCGC	2 cut(s)	8, 93
AclWI	GGATC	3 cut(s)	68, 341, 354
AcsI	RAATTY	1 cut(s)	268
AcuI	CTGAAG	3 cut(s)	98, 215, 435
AgsI	TTSAA	4 cut(s)	52, 214, 268, 334
AjnI	CCWGG	1 cut(s)	120
AleI	CACNNNNGTG	1 cut(s)	397
AluBI	AGCT	5 cut(s)	70, 79, 112, 337, 421
AluI	AGCT	5 cut(s)	70, 79, 112, 337, 421
Alw21I	GWGCWC	2 cut(s)	72, 81
AlwI	GGATC	3 cut(s)	68, 341, 354
AoxI	GGCC	2 cut(s)	102, 123
ApeKI	GCWGC	1 cut(s)	199
ApoI	RAATTY	1 cut(s)	268
AspS9I	GGNCC	3 cut(s)	118, 133, 327
AsuC2I	CCSGG	2 cut(s)	46, 137
AvaII	GGWCC	3 cut(s)	118, 133, 327
BamHI	GGATCC	1 cut(s)	346
BanII	GRGCYC	2 cut(s)	72, 81
Bbv12I	GWGCWC	2 cut(s)	72, 81
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	2 cut(s)	134, 167
BceAI	ACGGC	2 cut(s)	68, 80
BcgI	CGANNNNNNTGC	4 cut(s)	6, 40, 137, 171
BciT130I	CCWGG	1 cut(s)	122
BciVI	GTATCC	1 cut(s)	268
BclI	TGATCA	1 cut(s)	180
BcnI	CCSGG	2 cut(s)	46, 137
BfuI	GTATCC	1 cut(s)	268
BglI	GCCNNNNNGGC	1 cut(s)	101
BisI	GCNGC	2 cut(s)	93, 200
BlsI	GCNGC	2 cut(s)	94, 201
Bme1390I	CCNGG	3 cut(s)	46, 122, 137
Bme18I	GGWCC	3 cut(s)	118, 133, 327
BmgT120I	GGNCC	3 cut(s)	118, 133, 327
BmiI	GGNNCC	2 cut(s)	328, 348
BmrFI	CCNGG	3 cut(s)	46, 122, 137
BmsI	GCATC	3 cut(s)	32, 79, 197
BpuEI	CTTGAG	1 cut(s)	359
BpuMI	CCSGG	2 cut(s)	46, 137
BsaJI	CCNNGG	2 cut(s)	105, 366
Bse1I	ACTGG	1 cut(s)	322
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	105, 366
BseGI	GGATG	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	1 cut(s)	322
BseRI	GAGGAG	1 cut(s)	356
BseXI	GCAGC	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	336
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	2 cut(s)	104, 125
BsiHKAI	GWGCWC	2 cut(s)	72, 81
BsiSI	CCGG	2 cut(s)	45, 136
BslFI	GGGAC	1 cut(s)	340
BsmFI	GGGAC	1 cut(s)	340
BsnI	GGCC	2 cut(s)	104, 125
Bsp1286I	GDGCHC	2 cut(s)	72, 81
Bsp143I	GATC	4 cut(s)	39, 60, 180, 346
Bsp19I	CCATGG	1 cut(s)	105
Bsp68I	TCGCGA	1 cut(s)	144
BspACI	CCGC	2 cut(s)	8, 93
BspANI	GGCC	2 cut(s)	104, 125
BspCNI	CTCAG	1 cut(s)	319
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	328, 348
BspPI	GGATC	3 cut(s)	68, 341, 354
BspQI	GCTCTTC	1 cut(s)	411
BsrI	ACTGG	1 cut(s)	322
BssECI	CCNNGG	2 cut(s)	105, 366
BssMI	GATC	4 cut(s)	39, 60, 180, 346
BssT1I	CCWWGG	2 cut(s)	105, 366
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	1 cut(s)	56
Bst6I	CTCTTC	1 cut(s)	411
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	306
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	159
BstFNI	CGCG	1 cut(s)	144
BstKTI	GATC	4 cut(s)	42, 63, 183, 349
BstMBI	GATC	4 cut(s)	39, 60, 180, 346
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 34, 76, 89, 101, 199
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	3 cut(s)	44, 120, 135
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	211
BstX2I	RGATCY	2 cut(s)	60, 346
BstXI	CCANNNNNNTGG	1 cut(s)	399
BstYI	RGATCY	2 cut(s)	60, 346
BsuI	GTATCC	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	104, 125
BtgI	CCRYGG	1 cut(s)	105
BtgZI	GCGATG	2 cut(s)	9, 174
BtsCI	GGATG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	315
BtuMI	TCGCGA	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	81
Cfr13I	GGNCC	3 cut(s)	118, 133, 327
CviAII	CATG	2 cut(s)	106, 388
CviJI	RGCY	8 cut(s)	70, 79, 104, 112, 125, 303, 337, 421
CviKI_1	RGCY	8 cut(s)	70, 79, 104, 112, 125, 303, 337, 421
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	4 cut(s)	41, 62, 182, 348
DpnII	GATC	4 cut(s)	39, 60, 180, 346
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
EciI	GGCGGA	1 cut(s)	23
Ecl136II	GAGCTC	2 cut(s)	70, 79
Eco130I	CCWWGG	2 cut(s)	105, 366
Eco24I	GRGCYC	2 cut(s)	72, 81
Eco47I	GGWCC	3 cut(s)	118, 133, 327
Eco53kI	GAGCTC	2 cut(s)	70, 79
Eco57I	CTGAAG	3 cut(s)	98, 215, 435
EcoICRI	GAGCTC	2 cut(s)	70, 79
EcoO109I	RGGNCCY	1 cut(s)	327
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	2 cut(s)	105, 366
EcoT22I	ATGCAT	1 cut(s)	190
EcoT38I	GRGCYC	2 cut(s)	72, 81
ErhI	CCWWGG	2 cut(s)	105, 366
FaeI	CATG	2 cut(s)	109, 391
FaiI	YATR	4 cut(s)	107, 221, 231, 389
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	2 cut(s)	105, 387
FbaI	TGATCA	1 cut(s)	180
Fnu4HI	GCNGC	2 cut(s)	93, 200
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	2 cut(s)	72, 81
Fsp4HI	GCNGC	2 cut(s)	93, 200
GluI	GCNGC	2 cut(s)	93, 200
HaeIII	GGCC	2 cut(s)	104, 125
HapII	CCGG	2 cut(s)	45, 136
Hin1II	CATG	2 cut(s)	109, 391
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	2 cut(s)	32, 425
HpaII	CCGG	2 cut(s)	45, 136
Hpy188I	TCNGA	2 cut(s)	60, 67
Hpy188III	TCNNGA	4 cut(s)	143, 248, 296, 438
Hpy99I	CGWCG	2 cut(s)	89, 149
HpyAV	CCTTC	4 cut(s)	94, 208, 293, 340
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	2 cut(s)	188, 353
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 34, 76, 89, 101, 199
HpyF3I	CTNAG	1 cut(s)	306
Hsp92II	CATG	2 cut(s)	109, 391
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	4 cut(s)	39, 60, 180, 346
LguI	GCTCTTC	1 cut(s)	411
LmnI	GCTCC	3 cut(s)	67, 75, 109
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	3 cut(s)	32, 79, 197
MalI	GATC	4 cut(s)	41, 62, 182, 348
MboI	GATC	4 cut(s)	39, 60, 180, 346
MboII	GAAGA	1 cut(s)	428
MflI	RGATCY	2 cut(s)	60, 346
MhlI	GDGCHC	2 cut(s)	72, 81
MluCI	AATT	3 cut(s)	209, 225, 268
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	38
MnlI	CCTC	2 cut(s)	334, 337
Mph1103I	ATGCAT	1 cut(s)	190
MslI	CAYNNNNRTG	1 cut(s)	397
MspI	CCGG	2 cut(s)	45, 136
MspR9I	CCNGG	3 cut(s)	46, 122, 137
MvaI	CCWGG	1 cut(s)	122
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	6 cut(s)	14, 34, 76, 89, 101, 199
NciI	CCSGG	2 cut(s)	46, 137
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	4 cut(s)	39, 60, 180, 346
NlaIII	CATG	2 cut(s)	109, 391
NlaIV	GGNNCC	2 cut(s)	328, 348
NruI	TCGCGA	1 cut(s)	144
NsiI	ATGCAT	1 cut(s)	190
OliI	CACNNNNGTG	1 cut(s)	397
PciSI	GCTCTTC	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	2 cut(s)	94, 201
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PpuMI	RGGWCCY	1 cut(s)	327
Psp124BI	GAGCTC	2 cut(s)	72, 81
Psp5II	RGGWCCY	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	328, 348
PspPI	GGNCC	3 cut(s)	118, 133, 327
PspPPI	RGGWCCY	1 cut(s)	327
PsuI	RGATCY	2 cut(s)	60, 346
RruI	TCGCGA	1 cut(s)	144
RseI	CAYNNNNRTG	1 cut(s)	397
SacI	GAGCTC	2 cut(s)	72, 81
SapI	GCTCTTC	1 cut(s)	411
SatI	GCNGC	2 cut(s)	93, 200
Sau3AI	GATC	4 cut(s)	39, 60, 180, 346
Sau96I	GGNCC	3 cut(s)	118, 133, 327
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	3 cut(s)	46, 122, 137
SduI	GDGCHC	2 cut(s)	72, 81
SetI	ASST	7 cut(s)	72, 81, 114, 120, 332, 339, 423
SfaNI	GCATC	3 cut(s)	32, 79, 197
SinI	GGWCC	3 cut(s)	118, 133, 327
SmiMI	CAYNNNNRTG	1 cut(s)	397
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	3 cut(s)	209, 225, 268
SsiI	CCGC	2 cut(s)	8, 93
SstI	GAGCTC	2 cut(s)	72, 81
StyD4I	CCNGG	3 cut(s)	44, 120, 135
StyI	CCWWGG	2 cut(s)	105, 366
TaaI	ACNGT	1 cut(s)	56
TaqI	TCGA	2 cut(s)	87, 260
TasI	AATT	3 cut(s)	209, 225, 268
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	425
TscAI	CASTG	1 cut(s)	322
TseI	GCWGC	1 cut(s)	199
TspRI	CASTG	1 cut(s)	322
VpaK11BI	GGWCC	3 cut(s)	118, 133, 327
XapI	RAATTY	1 cut(s)	268
Zsp2I	ATGCAT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.