Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000150.1

Orthogroup ID

OG0001324

Physical Location & Seq

Genomic Coordinates Reverse (-)

63265 .. 65914

Gene Structure 2650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000150.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgtcgaatgcttcaagctatgttaatacgcattacttcgttttctgggaagccctacgtacagttttgctgctatttcgcaacaccactgtgtatccggccagcaccgtctccgatttgtcggccgtcgatgccgccgtgaaggccatggagcttcaggtccaggccatcaaggaccggaaactgatcaatgcatcgctgaagcagcaaaggaaattgaaggatatgtcaatttatgcccccaatcatgttcctgaaagaatgtcgatgttgaatttggatacaaatagatgtttatttccagaaggctctcagcaaaacactggttctgggaccttcaagcttgaggaggatcctgcaccaccaccacccaaggagaaaaagggtcgttccatgccaccattgtggtttgtaagggctgaagagctggattccttgtcatcatacatgagaggaaggcttacactagagaaggtcaatgcagctattagtgacatggcaacatatgctgaagcaaattatcagctcatagctgctccaaagaagaatgtttgtgttctgcctctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SKA1

Protein Analysis

189

Amino Acids

21.2

Weight (kDa)

9.04

Isoelectric Point (pI)

50.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60660
fragaria_vesca	FvH4_7g11150 FvH4_7g11150 FvH4_7g11150 FvH4_7g11150
malus_domestica	MD02G1209900.v1.1
prunus_persica	Prupe.2G138600_v2.0.a1
pyrus_communis	pycom02g17150
rosa_chinensis	RchiOBHm_Chr1g0349231 RchiOBHm_Chr1g0349241 RchiOBHm_Chr5g0028911
rosa_laevigata	RLG00000009597 RLG00000028567 RLG00000028571 RLG00000028575 RLG00000028581 RLG00000028583 RLG00000028586 RLG00000028589 RLG00000028593 RLG00000028595 RLG00000028597 RLG00000030621
rosa_multiflora	Rmu_sc0000827.1_g000037 Rmu_sc0002914.1_g000030 Rmu_sc0003385.1_g000016 Rmu_sc0003385.1_g000026 Rmu_sc0006415.1_g000020 Rmu_sc0016526.1_g000001 Rmu_ssc0000150.1_g000012
rosa_roxburghii	Rroxscaffold_4G00305770 Rroxscaffold_4G00305780 Rroxscaffold_4G00305890 Rroxscaffold_4G00305910 Rroxscaffold_4G00305970 Rroxscaffold_4G00306010 Rroxscaffold_4G00306040
rosa_rugosa	Rorug01G0201500 Rorug01G0201900 Rorug05G0111400 Rorug05G0239700
rosa_samantha	Rh1AG218700 Rh1AG219100 Rh1AG219600 Rh1CG203200 Rh1CG204600 Rh1CG204800 Rh3AG070800 Rh5AG203700 Rh5BG202000
rosa_wichuraiana	Rw0G019560 Rw1G018600 Rw1G018630 Rw5G018440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	2 cut(s)	347, 360
AcoI	YGGCCR	2 cut(s)	99, 123
AcsI	RAATTY	1 cut(s)	274
AcuI	CTGAAG	4 cut(s)	140, 221, 441, 531
AfaI	GTAC	1 cut(s)	61
AgsI	TTSAA	4 cut(s)	15, 220, 274, 340
AjnI	CCWGG	1 cut(s)	162
AleI	CACNNNNGTG	2 cut(s)	89, 403
AluBI	AGCT	7 cut(s)	18, 154, 343, 427, 485, 526, 533
AluI	AGCT	7 cut(s)	18, 154, 343, 427, 485, 526, 533
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	2 cut(s)	347, 360
AoxI	GGCC	4 cut(s)	99, 123, 144, 165
ApeKI	GCWGC	4 cut(s)	70, 205, 482, 533
ApoI	RAATTY	1 cut(s)	274
AspS9I	GGNCC	3 cut(s)	160, 175, 333
AvaII	GGWCC	3 cut(s)	160, 175, 333
BamHI	GGATCC	1 cut(s)	352
BbvI	GCAGC	4 cut(s)	57, 217, 494, 520
BccI	CCATC	1 cut(s)	176
BceAI	ACGGC	2 cut(s)	110, 122
BciT130I	CCWGG	1 cut(s)	164
BciVI	GTATCC	2 cut(s)	105, 274
BclI	TGATCA	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	1 cut(s)	467
BfuI	GTATCC	2 cut(s)	105, 274
BglI	GCCNNNNNGGC	1 cut(s)	143
BisI	GCNGC	5 cut(s)	71, 135, 206, 483, 534
BlsI	GCNGC	5 cut(s)	72, 136, 207, 484, 535
Bme1390I	CCNGG	1 cut(s)	164
Bme18I	GGWCC	3 cut(s)	160, 175, 333
BmgT120I	GGNCC	3 cut(s)	160, 175, 333
BmiI	GGNNCC	2 cut(s)	334, 354
BmrFI	CCNGG	1 cut(s)	164
BmsI	GCATC	2 cut(s)	121, 203
BpuEI	CTTGAG	1 cut(s)	365
BsaAI	YACGTR	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	147, 372
BsaWI	WCCGGW	1 cut(s)	177
Bse1I	ACTGG	1 cut(s)	328
BseBI	CCWGG	1 cut(s)	164
BseDI	CCNNGG	2 cut(s)	147, 372
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	1 cut(s)	362
BseX3I	CGGCCG	1 cut(s)	123
BseXI	GCAGC	4 cut(s)	57, 217, 494, 520
BsgI	GTGCAG	1 cut(s)	342
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	4 cut(s)	101, 125, 146, 167
BsiEI	CGRYCG	1 cut(s)	126
BsiSI	CCGG	2 cut(s)	98, 178
BslFI	GGGAC	1 cut(s)	346
BsmAI	GTCTC	1 cut(s)	115
BsmBI	CGTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	346
BsmI	GAATGC	1 cut(s)	13
BsnI	GGCC	4 cut(s)	101, 125, 146, 167
Bsp143I	GATC	2 cut(s)	186, 352
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	4 cut(s)	101, 125, 146, 167
BspCNI	CTCAG	1 cut(s)	325
BspLI	GGNNCC	2 cut(s)	334, 354
BspPI	GGATC	2 cut(s)	347, 360
BspQI	GCTCTTC	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	2 cut(s)	147, 372
BssMI	GATC	2 cut(s)	186, 352
BssT1I	CCWWGG	2 cut(s)	147, 372
Bst2UI	CCWGG	1 cut(s)	164
Bst4CI	ACNGT	3 cut(s)	64, 91, 109
Bst6I	CTCTTC	1 cut(s)	417
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstBAI	YACGTR	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	312
BstDSI	CCRYGG	1 cut(s)	147
BstKTI	GATC	2 cut(s)	189, 355
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	2 cut(s)	186, 352
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 143, 205, 506
BstNI	CCWGG	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	162
BstSNI	TACGTA	1 cut(s)	59
BstV1I	GCAGC	4 cut(s)	57, 217, 494, 520
BstX2I	RGATCY	1 cut(s)	352
BstXI	CCANNNNNNTGG	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	352
BstZI	CGGCCG	1 cut(s)	123
BsuI	GTATCC	2 cut(s)	105, 274
BsuRI	GGCC	4 cut(s)	101, 125, 146, 167
BtgI	CCRYGG	1 cut(s)	147
BtgZI	GCGATG	1 cut(s)	180
BtsIMutI	CAGTG	2 cut(s)	87, 321
Cac8I	GCNNGC	1 cut(s)	103
Cfr13I	GGNCC	3 cut(s)	160, 175, 333
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	5 cut(s)	148, 248, 394, 448, 496
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	2 cut(s)	188, 354
DpnII	GATC	2 cut(s)	186, 352
EaeI	YGGCCR	2 cut(s)	99, 123
EagI	CGGCCG	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
EclXI	CGGCCG	1 cut(s)	123
Eco105I	TACGTA	1 cut(s)	59
Eco130I	CCWWGG	2 cut(s)	147, 372
Eco47I	GGWCC	3 cut(s)	160, 175, 333
Eco52I	CGGCCG	1 cut(s)	123
Eco57I	CTGAAG	4 cut(s)	140, 221, 441, 531
EcoO109I	RGGNCCY	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	162
EcoT14I	CCWWGG	2 cut(s)	147, 372
EcoT22I	ATGCAT	1 cut(s)	196
ErhI	CCWWGG	2 cut(s)	147, 372
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	5 cut(s)	151, 251, 397, 451, 499
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	5 cut(s)	147, 247, 393, 447, 495
FauNDI	CATATG	1 cut(s)	505
FbaI	TGATCA	1 cut(s)	186
Fnu4HI	GCNGC	5 cut(s)	71, 135, 206, 483, 534
Fsp4HI	GCNGC	5 cut(s)	71, 135, 206, 483, 534
FspBI	CTAG	1 cut(s)	467
GluI	GCNGC	5 cut(s)	71, 135, 206, 483, 534
HaeIII	GGCC	4 cut(s)	101, 125, 146, 167
HapII	CCGG	2 cut(s)	98, 178
Hin1II	CATG	5 cut(s)	151, 251, 397, 451, 499
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	1 cut(s)	431
HpaII	CCGG	2 cut(s)	98, 178
Hpy188I	TCNGA	2 cut(s)	115, 569
Hpy188III	TCNNGA	2 cut(s)	254, 302
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	6 cut(s)	136, 214, 299, 346, 450, 466
HpyCH4III	ACNGT	3 cut(s)	64, 91, 109
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	3 cut(s)	194, 359, 482
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 143, 205, 506
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	5 cut(s)	151, 251, 397, 451, 499
Ksp22I	TGATCA	1 cut(s)	186
Kzo9I	GATC	2 cut(s)	186, 352
LguI	GCTCTTC	1 cut(s)	417
LmnI	GCTCC	2 cut(s)	151, 541
Lsp1109I	GCAGC	4 cut(s)	57, 217, 494, 520
LweI	GCATC	2 cut(s)	121, 203
MaeI	CTAG	1 cut(s)	467
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	1 cut(s)	491
MalI	GATC	2 cut(s)	188, 354
MboI	GATC	2 cut(s)	186, 352
MboII	GAAGA	2 cut(s)	434, 556
MflI	RGATCY	1 cut(s)	352
MluCI	AATT	4 cut(s)	215, 231, 274, 517
MnlI	CCTC	3 cut(s)	340, 343, 446
Mph1103I	ATGCAT	1 cut(s)	196
MseI	TTAA	1 cut(s)	24
MslI	CAYNNNNRTG	2 cut(s)	89, 403
MspI	CCGG	2 cut(s)	98, 178
MspR9I	CCNGG	1 cut(s)	164
Mva1269I	GAATGC	1 cut(s)	13
MvaI	CCWGG	1 cut(s)	164
MwoI	GCNNNNNNNGC	4 cut(s)	131, 143, 205, 506
NcoI	CCATGG	1 cut(s)	147
NdeI	CATATG	1 cut(s)	505
NdeII	GATC	2 cut(s)	186, 352
NlaIII	CATG	5 cut(s)	151, 251, 397, 451, 499
NlaIV	GGNNCC	2 cut(s)	334, 354
NmuCI	GTSAC	1 cut(s)	491
NsiI	ATGCAT	1 cut(s)	196
OliI	CACNNNNGTG	2 cut(s)	89, 403
PciSI	GCTCTTC	1 cut(s)	417
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PctI	GAATGC	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	431
PkrI	GCNGC	5 cut(s)	72, 136, 207, 484, 535
Ppu21I	YACGTR	1 cut(s)	59
PpuMI	RGGWCCY	1 cut(s)	333
Psp5II	RGGWCCY	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	162
PspN4I	GGNNCC	2 cut(s)	334, 354
PspPI	GGNCC	3 cut(s)	160, 175, 333
PspPPI	RGGWCCY	1 cut(s)	333
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
RseI	CAYNNNNRTG	2 cut(s)	89, 403
SapI	GCTCTTC	1 cut(s)	417
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	5 cut(s)	71, 135, 206, 483, 534
Sau3AI	GATC	2 cut(s)	186, 352
Sau96I	GGNCC	3 cut(s)	160, 175, 333
ScrFI	CCNGG	1 cut(s)	164
SfaNI	GCATC	2 cut(s)	121, 203
SinI	GGWCC	3 cut(s)	160, 175, 333
SmiMI	CAYNNNNRTG	2 cut(s)	89, 403
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
SnaBI	TACGTA	1 cut(s)	59
Sse9I	AATT	4 cut(s)	215, 231, 274, 517
SsiI	CCGC	1 cut(s)	135
SspMI	CTAG	1 cut(s)	467
StyD4I	CCNGG	1 cut(s)	162
StyI	CCWWGG	2 cut(s)	147, 372
TaaI	ACNGT	3 cut(s)	64, 91, 109
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	3 cut(s)	5, 129, 266
TasI	AATT	4 cut(s)	215, 231, 274, 517
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	431
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	2 cut(s)	94, 328
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	4 cut(s)	70, 205, 482, 533
Tsp45I	GTSAC	1 cut(s)	491
TspRI	CASTG	2 cut(s)	94, 328
VpaK11BI	GGWCC	3 cut(s)	160, 175, 333
XapI	RAATTY	1 cut(s)	274
XspI	CTAG	1 cut(s)	467
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.