Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003385.1

Orthogroup ID

OG0001324

Physical Location & Seq

Genomic Coordinates Reverse (-)

65549 .. 67682

Gene Structure 2134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003385.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atggaggctgagaaagcaggggcgggactcgctgatcgccgggttcaacagtcggatctcggagctccaagggctttgtacccggccagtagcgtcaccgatttgacggccgtcgacgccgctgtgaaggccatggagcttcaggtccaggccatcaaggaccgggtttcagttgtatgcgtggcagaaactgatcgatgcattgctgaagcaacaaaggaaattgaaggatatgtcagtttatgcccccactcatgttccggaatcttgatacaaacagatgtttatttccagaaagctctcagcaaaacaatggttctgggcttttcaagcttgacgaggatcctgcaccaccaccaccacctaagatacatgagaggaaggcttacactagagaaggtcaatgcagctattagtgacatggcaacatatgctgaagcaaattatcagctcatagctgctccaaagaagaatgtttgtgttctgatttttggtttgtacatctttggcacaggtctgattttggttatcaatgatcaatgggaaaaagccttggtaagtgaattaaatcaggttattgggtctgttctcaggtcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SKA1

Protein Analysis

199

Amino Acids

21.75

Weight (kDa)

7.0

Isoelectric Point (pI)

30.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60660
fragaria_vesca	FvH4_7g11150 FvH4_7g11150 FvH4_7g11150 FvH4_7g11150
malus_domestica	MD02G1209900.v1.1
prunus_persica	Prupe.2G138600_v2.0.a1
pyrus_communis	pycom02g17150
rosa_chinensis	RchiOBHm_Chr1g0349231 RchiOBHm_Chr1g0349241 RchiOBHm_Chr5g0028911
rosa_laevigata	RLG00000009597 RLG00000028567 RLG00000028571 RLG00000028575 RLG00000028581 RLG00000028583 RLG00000028586 RLG00000028589 RLG00000028593 RLG00000028595 RLG00000028597 RLG00000030621
rosa_multiflora	Rmu_sc0000827.1_g000037 Rmu_sc0002914.1_g000030 Rmu_sc0003385.1_g000016 Rmu_sc0003385.1_g000026 Rmu_sc0006415.1_g000020 Rmu_sc0016526.1_g000001 Rmu_ssc0000150.1_g000012
rosa_roxburghii	Rroxscaffold_4G00305770 Rroxscaffold_4G00305780 Rroxscaffold_4G00305890 Rroxscaffold_4G00305910 Rroxscaffold_4G00305970 Rroxscaffold_4G00306010 Rroxscaffold_4G00306040
rosa_rugosa	Rorug01G0201500 Rorug01G0201900 Rorug05G0111400 Rorug05G0239700
rosa_samantha	Rh1AG218700 Rh1AG219100 Rh1AG219600 Rh1CG203200 Rh1CG204600 Rh1CG204800 Rh3AG070800 Rh5AG203700 Rh5BG202000
rosa_wichuraiana	Rw0G019560 Rw1G018600 Rw1G018630 Rw5G018440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	114
AccIII	TCCGGA	1 cut(s)	260
AciI	CCGC	2 cut(s)	23, 120
AclWI	GGATC	3 cut(s)	63, 337, 350
AcoI	YGGCCR	2 cut(s)	84, 108
AcuI	CTGAAG	3 cut(s)	125, 228, 456
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	2 cut(s)	80, 500
AgsI	TTSAA	3 cut(s)	47, 227, 330
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	7 cut(s)	65, 139, 299, 333, 410, 451, 458
AluI	AGCT	7 cut(s)	65, 139, 299, 333, 410, 451, 458
Alw21I	GWGCWC	1 cut(s)	67
AlwI	GGATC	3 cut(s)	63, 337, 350
AlwNI	CAGNNNCTG	2 cut(s)	191, 597
Aor13HI	TCCGGA	1 cut(s)	260
AoxI	GGCC	4 cut(s)	84, 108, 129, 150
ApeKI	GCWGC	2 cut(s)	407, 458
AspS9I	GGNCC	3 cut(s)	145, 160, 594
AsuC2I	CCSGG	3 cut(s)	41, 83, 164
AsuHPI	GGTGA	1 cut(s)	88
AvaII	GGWCC	3 cut(s)	145, 160, 594
BamHI	GGATCC	1 cut(s)	342
BanII	GRGCYC	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	2 cut(s)	419, 445
BccI	CCATC	1 cut(s)	161
BceAI	ACGGC	2 cut(s)	95, 123
BcgI	CGANNNNNNTGC	2 cut(s)	328, 362
BciT130I	CCWGG	1 cut(s)	149
BclI	TGATCA	1 cut(s)	535
BcnI	CCSGG	3 cut(s)	41, 83, 164
BfaI	CTAG	1 cut(s)	392
BisI	GCNGC	3 cut(s)	120, 408, 459
BlsI	GCNGC	3 cut(s)	121, 409, 460
Bme1390I	CCNGG	4 cut(s)	41, 83, 149, 164
Bme18I	GGWCC	3 cut(s)	145, 160, 594
BmgT120I	GGNCC	3 cut(s)	145, 160, 594
BmiI	GGNNCC	1 cut(s)	344
BmrFI	CCNGG	4 cut(s)	41, 83, 149, 164
BmsI	GCATC	1 cut(s)	188
BoxI	GACNNNNGTC	1 cut(s)	110
BpuMI	CCSGG	3 cut(s)	41, 83, 164
Bsa29I	ATCGAT	1 cut(s)	196
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	3 cut(s)	68, 132, 552
BsaWI	WCCGGW	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	87
Bse3DI	GCAATG	1 cut(s)	201
BseAI	TCCGGA	1 cut(s)	260
BseBI	CCWGG	1 cut(s)	149
BseCI	ATCGAT	1 cut(s)	196
BseDI	CCNNGG	3 cut(s)	68, 132, 552
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	316
BseNI	ACTGG	1 cut(s)	87
BseX3I	CGGCCG	1 cut(s)	108
BseXI	GCAGC	2 cut(s)	419, 445
BsgI	GTGCAG	1 cut(s)	332
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	4 cut(s)	86, 110, 131, 152
BshVI	ATCGAT	1 cut(s)	196
BsiEI	CGRYCG	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	67
BsiSI	CCGG	4 cut(s)	40, 83, 163, 261
BslFI	GGGAC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	4 cut(s)	86, 110, 131, 152
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp13I	TCCGGA	1 cut(s)	260
Bsp1407I	TGTACA	1 cut(s)	498
Bsp143I	GATC	5 cut(s)	34, 55, 193, 342, 535
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	2 cut(s)	23, 120
BspANI	GGCC	4 cut(s)	86, 110, 131, 152
BspCNI	CTCAG	1 cut(s)	315
BspDI	ATCGAT	1 cut(s)	196
BspEI	TCCGGA	1 cut(s)	260
BspLI	GGNNCC	1 cut(s)	344
BspPI	GGATC	3 cut(s)	63, 337, 350
BsrDI	GCAATG	1 cut(s)	201
BsrGI	TGTACA	1 cut(s)	498
BsrI	ACTGG	1 cut(s)	87
BssECI	CCNNGG	3 cut(s)	68, 132, 552
BssMI	GATC	5 cut(s)	34, 55, 193, 342, 535
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	3 cut(s)	68, 132, 552
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	117
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstAUI	TGTACA	1 cut(s)	498
BstDEI	CTNAG	4 cut(s)	9, 302, 365, 590
BstDSI	CCRYGG	1 cut(s)	132
BstKTI	GATC	5 cut(s)	37, 58, 196, 345, 538
BstMBI	GATC	5 cut(s)	34, 55, 193, 342, 535
BstMCI	CGRYCG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 29, 71, 116, 128, 330, 431
BstNI	CCWGG	1 cut(s)	149
BstPAI	GACNNNNGTC	1 cut(s)	110
BstSCI	CCNGG	4 cut(s)	39, 81, 147, 162
BstV1I	GCAGC	2 cut(s)	419, 445
BstX2I	RGATCY	2 cut(s)	55, 342
BstYI	RGATCY	2 cut(s)	55, 342
BstZI	CGGCCG	1 cut(s)	108
Bsu15I	ATCGAT	1 cut(s)	196
BsuRI	GGCC	4 cut(s)	86, 110, 131, 152
BsuTUI	ATCGAT	1 cut(s)	196
BtgI	CCRYGG	1 cut(s)	132
CaiI	CAGNNNCTG	2 cut(s)	191, 597
Cfr13I	GGNCC	3 cut(s)	145, 160, 594
ClaI	ATCGAT	1 cut(s)	196
CseI	GACGC	2 cut(s)	82, 125
Csp6I	GTAC	2 cut(s)	79, 499
CviAII	CATG	4 cut(s)	133, 255, 373, 421
CviQI	GTAC	2 cut(s)	79, 499
DdeI	CTNAG	4 cut(s)	9, 302, 365, 590
DpnI	GATC	5 cut(s)	36, 57, 195, 344, 537
DpnII	GATC	5 cut(s)	34, 55, 193, 342, 535
EaeI	YGGCCR	2 cut(s)	84, 108
EagI	CGGCCG	1 cut(s)	108
Ecl136II	GAGCTC	1 cut(s)	65
EclXI	CGGCCG	1 cut(s)	108
Eco130I	CCWWGG	3 cut(s)	68, 132, 552
Eco24I	GRGCYC	1 cut(s)	67
Eco47I	GGWCC	3 cut(s)	145, 160, 594
Eco52I	CGGCCG	1 cut(s)	108
Eco53kI	GAGCTC	1 cut(s)	65
Eco57I	CTGAAG	3 cut(s)	125, 228, 456
EcoICRI	GAGCTC	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	594
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	3 cut(s)	68, 132, 552
EcoT22I	ATGCAT	1 cut(s)	203
EcoT38I	GRGCYC	1 cut(s)	67
ErhI	CCWWGG	3 cut(s)	68, 132, 552
FaeI	CATG	4 cut(s)	136, 258, 376, 424
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	4 cut(s)	132, 254, 372, 420
FauI	CCCGC	1 cut(s)	16
FauNDI	CATATG	1 cut(s)	430
FbaI	TGATCA	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	3 cut(s)	120, 408, 459
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	3 cut(s)	120, 408, 459
FspBI	CTAG	1 cut(s)	392
GluI	GCNGC	3 cut(s)	120, 408, 459
HaeIII	GGCC	4 cut(s)	86, 110, 131, 152
HapII	CCGG	4 cut(s)	40, 83, 163, 261
HgaI	GACGC	2 cut(s)	82, 125
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	4 cut(s)	136, 258, 376, 424
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	331
HinfI	GANTC	2 cut(s)	27, 264
HpaII	CCGG	4 cut(s)	40, 83, 163, 261
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	4 cut(s)	55, 62, 486, 519
Hpy188III	TCNNGA	4 cut(s)	261, 268, 292, 597
Hpy8I	GTNNAC	1 cut(s)	115
Hpy99I	CGWCG	2 cut(s)	116, 119
HpyAV	CCTTC	4 cut(s)	121, 221, 375, 391
HpyCH4III	ACNGT	1 cut(s)	51
HpyCH4V	TGCA	3 cut(s)	201, 349, 407
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 29, 71, 116, 128, 330, 431
HpyF3I	CTNAG	4 cut(s)	9, 302, 365, 590
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	4 cut(s)	136, 258, 376, 424
Kpn2I	TCCGGA	1 cut(s)	260
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	5 cut(s)	34, 55, 193, 342, 535
LmnI	GCTCC	4 cut(s)	62, 70, 136, 466
Lsp1109I	GCAGC	2 cut(s)	419, 445
LweI	GCATC	1 cut(s)	188
MaeI	CTAG	1 cut(s)	392
MaeIII	GTNAC	2 cut(s)	94, 416
MalI	GATC	5 cut(s)	36, 57, 195, 344, 537
MboI	GATC	5 cut(s)	34, 55, 193, 342, 535
MboII	GAAGA	1 cut(s)	481
MflI	RGATCY	2 cut(s)	55, 342
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	3 cut(s)	222, 442, 563
MlyI	GAGTC	1 cut(s)	21
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	2 cut(s)	333, 371
Mph1103I	ATGCAT	1 cut(s)	203
MroI	TCCGGA	1 cut(s)	260
MseI	TTAA	1 cut(s)	566
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	4 cut(s)	40, 83, 163, 261
MspR9I	CCNGG	4 cut(s)	41, 83, 149, 164
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	7 cut(s)	14, 29, 71, 116, 128, 330, 431
NciI	CCSGG	3 cut(s)	41, 83, 164
NcoI	CCATGG	1 cut(s)	132
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	5 cut(s)	34, 55, 193, 342, 535
NlaIII	CATG	4 cut(s)	136, 258, 376, 424
NlaIV	GGNNCC	1 cut(s)	344
NmuCI	GTSAC	2 cut(s)	94, 416
NsiI	ATGCAT	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	264
PkrI	GCNGC	3 cut(s)	121, 409, 460
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
PpuMI	RGGWCCY	1 cut(s)	594
PshAI	GACNNNNGTC	1 cut(s)	110
Psp124BI	GAGCTC	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	594
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	344
PspPI	GGNCC	3 cut(s)	145, 160, 594
PspPPI	RGGWCCY	1 cut(s)	594
PstNI	CAGNNNCTG	2 cut(s)	191, 597
PsuI	RGATCY	2 cut(s)	55, 342
RsaI	GTAC	2 cut(s)	80, 500
RsaNI	GTAC	2 cut(s)	79, 499
SacI	GAGCTC	1 cut(s)	67
SalI	GTCGAC	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	566
SatI	GCNGC	3 cut(s)	120, 408, 459
Sau3AI	GATC	5 cut(s)	34, 55, 193, 342, 535
Sau96I	GGNCC	3 cut(s)	145, 160, 594
SchI	GAGTC	1 cut(s)	21
ScrFI	CCNGG	4 cut(s)	41, 83, 149, 164
SduI	GDGCHC	1 cut(s)	67
SfaNI	GCATC	1 cut(s)	188
SgrDI	CGTCGACG	1 cut(s)	113
SinI	GGWCC	3 cut(s)	145, 160, 594
Sse9I	AATT	3 cut(s)	222, 442, 563
SsiI	CCGC	2 cut(s)	23, 120
SspMI	CTAG	1 cut(s)	392
SstI	GAGCTC	1 cut(s)	67
StyD4I	CCNGG	4 cut(s)	39, 81, 147, 162
StyI	CCWWGG	3 cut(s)	68, 132, 552
TaaI	ACNGT	1 cut(s)	51
TaqI	TCGA	2 cut(s)	114, 196
TasI	AATT	3 cut(s)	222, 442, 563
TatI	WGTACW	1 cut(s)	498
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	264
Tru1I	TTAA	1 cut(s)	566
Tru9I	TTAA	1 cut(s)	566
TseFI	GTSAC	2 cut(s)	94, 416
TseI	GCWGC	2 cut(s)	407, 458
Tsp45I	GTSAC	2 cut(s)	94, 416
VpaK11BI	GGWCC	3 cut(s)	145, 160, 594
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	392
Zsp2I	ATGCAT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.