Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000221.1

Orthogroup ID

OG0001344

Physical Location & Seq

Genomic Coordinates Forward (+)

2020 .. 2777

Gene Structure 758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atgaagagaattaatccagccgggccagaagcgcatgactttgtctccattactggtcacggggtgaaggctattgttcggggtagggaaataattgtggggaacaagagcttgatggtggaccagaacattgcagttccactcgatgcagaagactacctagcagaagctgaagggctggctcaaactgggattctagtagccatagatggagaagtggccggagttctagcaatatctgatccactgaaaccaggtgctcaagaagtaattaccatactcaagtcaatgagtgttagaagcataatggtgacaggtgacaattggggaactgcaaattctattgccaatgaagttggtattgatgctgttatagccgaagcgaaacctgaccagaaagcagagaaagtgaaagaattgcaggcttcaggctacattgtggcgatggtgggagatggcatcaatgactcaccagcacttgtggcggcagatgtaggaatggcaattggtgctggcactgacattgcaattgaggcagcagacattgtgctaatgaagagcaacttggaggatgtgataactgccattgatctttcaactttcaaggaaaaccttcacccgtattcgtttgaactacatttgggctttgggatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

218

Amino Acids

22.73

Weight (kDa)

4.45

Isoelectric Point (pI)

18.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	30 - 164	4.9e-22	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001344)

Species	Orthologous Gene IDs
malus_domestica	MD02G1192500.v1.1 MD03G1138700.v1.1 MD03G1180400.v1.1 MD03G1181400.v1.1 MD03G1182600.v1.1
pyrus_communis	pycom02g15570 pycom02g15620
rosa_chinensis	RchiOBHm_Chr2g0138301 RchiOBHm_Chr7g0198201
rosa_laevigata	RLG00000003887 RLG00000035827
rosa_multiflora	Rmu_sc0000221.1_g000001 Rmu_sc0002263.1_g000023 Rmu_sc0003465.1_g000045
rosa_roxburghii	Rroxscaffold_2G00106950 Rroxscaffold_2G00141500 Rroxscaffold_3G00232230 Rroxscaffold_5G00354760 Rroxscaffold_5G00354830
rosa_rugosa	Rorug01G0072400 Rorug01G0080400 Rorug02G0391900 Rorug03G0335000 Rorug05G0277500 Rorug06G0193000
rosa_samantha	Rh1AG099400 Rh1DG291600 Rh3BG287400 Rh3BG289600 Rh4BG446000 Rh4CG463300 Rh4DG336400 Rh5BG050800 Rh5BG085000 Rh5CG336100 Rh5CG336700 Rh5DG044200 Rh6BG050400 Rh7AG169000 Rh7AG169400 Rh7BG078400 Rh7BG172600 Rh7BG434400 Rh7BG434500 Rh7CG179100 Rh7CG468500 Rh7CG479100 Rh7DG171900 Rh7DG271300
rosa_wichuraiana	Rw1G013030 Rw3G006160 Rw4G015230 Rw5G030130 Rw6G044730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	485
AclWI	GGATC	1 cut(s)	236
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	1 cut(s)	337
AcuI	CTGAAG	2 cut(s)	192, 411
AdeI	CACNNNGTG	1 cut(s)	64
AgsI	TTSAA	3 cut(s)	597, 604, 632
AjnI	CCWGG	1 cut(s)	253
AjuI	GAANNNNNNNTTGG	2 cut(s)	548, 580
AluBI	AGCT	2 cut(s)	111, 170
AluI	AGCT	2 cut(s)	111, 170
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	1 cut(s)	236
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	2 cut(s)	23, 219
ApeKI	GCWGC	1 cut(s)	536
ApoI	RAATTY	1 cut(s)	337
AseI	ATTAAT	1 cut(s)	12
Asp700I	GAANNNNTTC	1 cut(s)	612
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	2 cut(s)	23, 121
AsuC2I	CCSGG	1 cut(s)	22
AsuHPI	GGTGA	5 cut(s)	76, 322, 329, 462, 608
AvaII	GGWCC	1 cut(s)	121
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	548
BccI	CCATC	4 cut(s)	109, 203, 439, 449
BciT130I	CCWGG	1 cut(s)	255
BcnI	CCSGG	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	3 cut(s)	161, 197, 230
BisI	GCNGC	2 cut(s)	486, 537
BlsI	GCNGC	2 cut(s)	487, 538
Bme1390I	CCNGG	2 cut(s)	22, 255
Bme18I	GGWCC	1 cut(s)	121
BmgT120I	GGNCC	2 cut(s)	23, 121
BmrFI	CCNGG	2 cut(s)	22, 255
BmrI	ACTGGG	1 cut(s)	198
BmsI	GCATC	3 cut(s)	136, 355, 468
BmuI	ACTGGG	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	159
BpuEI	CTTGAG	2 cut(s)	246, 266
BpuMI	CCSGG	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bse1I	ACTGG	2 cut(s)	58, 193
Bse3DI	GCAATG	2 cut(s)	129, 522
BseBI	CCWGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	577
BseMI	GCAATG	2 cut(s)	129, 522
BseNI	ACTGG	2 cut(s)	58, 193
BseXI	GCAGC	1 cut(s)	548
BshFI	GGCC	2 cut(s)	25, 221
BsiHKAI	GWGCWC	1 cut(s)	262
BsiSI	CCGG	2 cut(s)	21, 222
BsmAI	GTCTC	1 cut(s)	49
BsnI	GGCC	2 cut(s)	25, 221
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	2 cut(s)	241, 589
BspACI	CCGC	1 cut(s)	485
BspANI	GGCC	2 cut(s)	25, 221
BspPI	GGATC	1 cut(s)	236
BspQI	GCTCTTC	1 cut(s)	551
BsrDI	GCAATG	2 cut(s)	129, 522
BsrI	ACTGG	2 cut(s)	58, 193
BssMI	GATC	2 cut(s)	241, 589
Bst2UI	CCWGG	1 cut(s)	255
Bst6I	CTCTTC	1 cut(s)	551
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstC8I	GCNNGC	3 cut(s)	180, 423, 514
BstF5I	GGATG	1 cut(s)	577
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	2 cut(s)	244, 592
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	2 cut(s)	241, 589
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 374, 482, 509, 533
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	2 cut(s)	20, 253
BstV1I	GCAGC	1 cut(s)	548
BstV2I	GAAGAC	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	25, 221
BtgZI	GCGATG	1 cut(s)	458
BtsCI	GGATG	1 cut(s)	577
BtsIMutI	CAGTG	2 cut(s)	245, 516
Cac8I	GCNNGC	3 cut(s)	180, 423, 514
CaiI	CAGNNNCTG	1 cut(s)	170
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	2 cut(s)	23, 121
CsiI	ACCWGGT	1 cut(s)	253
CviAII	CATG	1 cut(s)	35
DpnI	GATC	2 cut(s)	243, 591
DpnII	GATC	2 cut(s)	241, 589
DraIII	CACNNNGTG	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	219
Eam1104I	CTCTTC	1 cut(s)	551
EarI	CTCTTC	1 cut(s)	551
Eco47I	GGWCC	1 cut(s)	121
Eco57I	CTGAAG	2 cut(s)	192, 411
EcoRII	CCWGG	1 cut(s)	253
FaeI	CATG	1 cut(s)	38
FaiI	YATR	6 cut(s)	36, 206, 278, 305, 374, 655
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FatI	CATG	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	486, 537
FokI	GGATG	1 cut(s)	584
Fsp4HI	GCNGC	2 cut(s)	486, 537
FspBI	CTAG	3 cut(s)	161, 197, 230
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	2 cut(s)	486, 537
HaeIII	GGCC	2 cut(s)	25, 221
HapII	CCGG	2 cut(s)	21, 222
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	38
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	2 cut(s)	193, 467
HpaII	CCGG	2 cut(s)	21, 222
HphI	GGTGA	5 cut(s)	76, 322, 329, 462, 608
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	3 cut(s)	61, 167, 623
HpyCH4V	TGCA	5 cut(s)	134, 149, 335, 421, 527
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 374, 482, 509, 533
Hsp92II	CATG	1 cut(s)	38
HspAI	GCGC	1 cut(s)	32
Kzo9I	GATC	2 cut(s)	241, 589
LguI	GCTCTTC	1 cut(s)	551
Lsp1109I	GCAGC	1 cut(s)	548
LweI	GCATC	3 cut(s)	136, 355, 468
MabI	ACCWGGT	1 cut(s)	253
MaeI	CTAG	3 cut(s)	161, 197, 230
MaeIII	GTNAC	3 cut(s)	56, 310, 317
MalI	GATC	2 cut(s)	243, 591
MboI	GATC	2 cut(s)	241, 589
MboII	GAAGA	3 cut(s)	16, 164, 568
MfeI	CAATTG	3 cut(s)	322, 504, 528
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	8 cut(s)	9, 93, 270, 322, 337, 416, 504, 528
MlyI	GAGTC	1 cut(s)	461
MnlI	CCTC	2 cut(s)	526, 562
MroXI	GAANNNNTTC	1 cut(s)	612
MseI	TTAA	1 cut(s)	12
MslI	CAYNNNNRTG	1 cut(s)	308
MspI	CCGG	2 cut(s)	21, 222
MspR9I	CCNGG	2 cut(s)	22, 255
MunI	CAATTG	3 cut(s)	322, 504, 528
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	5 cut(s)	31, 374, 482, 509, 533
NciI	CCSGG	1 cut(s)	22
NdeII	GATC	2 cut(s)	241, 589
NlaIII	CATG	1 cut(s)	38
NmuCI	GTSAC	3 cut(s)	56, 310, 317
PciSI	GCTCTTC	1 cut(s)	551
PdmI	GAANNNNTTC	1 cut(s)	612
PfeI	GAWTC	1 cut(s)	193
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	487, 538
PleI	GAGTC	1 cut(s)	461
PpsI	GAGTC	1 cut(s)	461
PshBI	ATTAAT	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspPI	GGNCC	2 cut(s)	23, 121
PstNI	CAGNNNCTG	1 cut(s)	170
PsyI	GACNNNGTC	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	308
SapI	GCTCTTC	1 cut(s)	551
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	2 cut(s)	486, 537
Sau3AI	GATC	2 cut(s)	241, 589
Sau96I	GGNCC	2 cut(s)	23, 121
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	2 cut(s)	22, 255
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	7 cut(s)	113, 162, 172, 259, 319, 391, 615
SexAI	ACCWGGT	1 cut(s)	253
SfaNI	GCATC	3 cut(s)	136, 355, 468
SinI	GGWCC	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	308
SmlI	CTYRAG	2 cut(s)	261, 281
SmoI	CTYRAG	2 cut(s)	261, 281
Sse9I	AATT	8 cut(s)	9, 93, 270, 322, 337, 416, 504, 528
SsiI	CCGC	1 cut(s)	485
SspMI	CTAG	3 cut(s)	161, 197, 230
StyD4I	CCNGG	2 cut(s)	20, 253
TaqI	TCGA	1 cut(s)	144
TasI	AATT	8 cut(s)	9, 93, 270, 322, 337, 416, 504, 528
TauI	GCSGC	1 cut(s)	488
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	2 cut(s)	252, 523
TseFI	GTSAC	3 cut(s)	56, 310, 317
TseI	GCWGC	1 cut(s)	536
Tsp45I	GTSAC	3 cut(s)	56, 310, 317
TspDTI	ATGAA	3 cut(s)	17, 366, 569
TspRI	CASTG	2 cut(s)	252, 523
Tth111I	GACNNNGTC	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	121
VspI	ATTAAT	1 cut(s)	12
XapI	RAATTY	1 cut(s)	337
XmnI	GAANNNNTTC	1 cut(s)	612
XspI	CTAG	3 cut(s)	161, 197, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.