Rorug05G0198800

Leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000487
Physical Location & Seq
Forward (+)
19671638 .. 19672009
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0198800.1

Sequence Viewer

Length: 372 bp
ATGAAAGATTTATTTACAAATCTCATAGCCTATGGTACTGCCTCTGTGATTTGTGTTGCTTTTATAATATTGTTTATTTGTATGTACAGAAACCATGGTGTTAGGATTGGGAACCACAAGAAGAATCAGCAATATGAAGCCAGACTTGCGGCCGAACAAGCTGCTTACAGAAGCAAATTGCCCAAACCATTAGATGTTGAAAGAGGTAGTAGTGGAACCAAGGATGGTGGGATGGTGATTTTGGCGGGAGCTGGCGCTGCTGTGGCCACTGCAGCTGTAGCAGGCAGTGGAGCTAGTACTAGTGATTTTAATGGTGGCAGCGGTGGCTCTGGGGGTGACGGTGGTGGCTGTGGGGGTTGTGGTGGAGATTGA

Protein Analysis

123

Amino Acids

12.26

Weight (kDa)

8.4

Isoelectric Point (pI)

22.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000487)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49760 AT5G49770
fragaria_vesca FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23881 FvH4_3g23881 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_5g27161 FvH4_5g27170
malus_domestica MD11G1206300.v1.1
prunus_persica Prupe.4G230700_v2.0.a1 Prupe.4G230700_v2.0.a1 Prupe.4G231100_v2.0.a1 Prupe.4G231100_v2.0.a1 Prupe.4G231100_v2.0.a1 Prupe.4G231100_v2.0.a1
pyrus_communis pycom11g17930
rosa_chinensis RchiOBHm_Chr5g0042211 RchiOBHm_Chr5g0042261 RchiOBHm_Chr5g0042271 RchiOBHm_Chr5g0042311 RchiOBHm_Chr5g0042381 RchiOBHm_Chr7g0218261
rosa_laevigata RLG00000002384 RLG00000002385 RLG00000034112 RLG00000034114 RLG00000034116 RLG00000034118
rosa_multiflora Rmu_sc0001715.1_g000008 Rmu_sc0001715.1_g000012 Rmu_sc0001715.1_g000026 Rmu_sc0004956.1_g000008
rosa_roxburghii Rroxscaffold_1G00038360 Rroxscaffold_1G00038390 Rroxscaffold_1G00038400 Rroxscaffold_1G00038450 Rroxscaffold_3G00241180
rosa_rugosa Rorug05G0198800 Rorug05G0199000 Rorug05G0199100.1 Rorug05G0199200 Rorug05G0199300 Rorug07G0175900
rosa_samantha Rh5AG283400 Rh5AG283900 Rh5AG284100 Rh5AG284300 Rh5AG284900 Rh5AG285300 Rh5AG285700 Rh5BG289300 Rh5BG289900 Rh5BG290200 Rh5BG290400 Rh5CG320700 Rh5CG321200 Rh5CG321500 Rh5CG322100 Rh5CG322400 Rh5DG298600 Rh5DG299100 Rh5DG299400 Rh5DG300200 Rh7AG317500 Rh7BG308900 Rh7CG334400 Rh7DG316500
rosa_wichuraiana Rw0G001480 Rw0G001500 Rw0G001750 Rw0G001780 Rw0G015430 Rw5G026520 Rw7G026960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 65
AciI CCGC 3 cut(s) 149, 245, 321
AcoI YGGCCR 2 cut(s) 150, 264
AfaI GTAC 3 cut(s) 37, 86, 298
AgsI TTSAA 1 cut(s) 200
AhlI ACTAGT 1 cut(s) 299
AluBI AGCT 4 cut(s) 161, 251, 275, 293
AluI AGCT 4 cut(s) 161, 251, 275, 293
AoxI GGCC 2 cut(s) 150, 264
ApeKI GCWGC 4 cut(s) 161, 257, 272, 318
AspLEI GCGC 1 cut(s) 257
AsuHPI GGTGA 2 cut(s) 247, 347
BalI TGGCCA 1 cut(s) 266
BbvI GCAGC 4 cut(s) 148, 244, 284, 330
BccI CCATC 2 cut(s) 218, 226
BcgI CGANNNNNNTGC 2 cut(s) 143, 177
BcuI ACTAGT 1 cut(s) 299
BfaI CTAG 2 cut(s) 294, 300
BfmI CTRYAG 2 cut(s) 270, 276
BfoI RGCGCY 1 cut(s) 258
BisI GCNGC 5 cut(s) 150, 162, 258, 273, 319
BlsI GCNGC 5 cut(s) 151, 163, 259, 274, 320
BmcAI AGTACT 1 cut(s) 298
BmiI GGNNCC 2 cut(s) 113, 217
BsaJI CCNNGG 2 cut(s) 94, 219
BseDI CCNNGG 2 cut(s) 94, 219
BseGI GGATG 2 cut(s) 229, 237
BseX3I CGGCCG 1 cut(s) 150
BseXI GCAGC 4 cut(s) 148, 244, 284, 330
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 2 cut(s) 152, 266
BsiEI CGRYCG 1 cut(s) 153
BsnI GGCC 2 cut(s) 152, 266
Bsp1407I TGTACA 1 cut(s) 84
Bsp19I CCATGG 1 cut(s) 94
BspACI CCGC 3 cut(s) 149, 245, 321
BspANI GGCC 2 cut(s) 152, 266
BspLI GGNNCC 2 cut(s) 113, 217
BspMAI CTGCAG 1 cut(s) 274
BsrGI TGTACA 1 cut(s) 84
BssECI CCNNGG 2 cut(s) 94, 219
BssT1I CCWWGG 2 cut(s) 94, 219
Bst4CI ACNGT 1 cut(s) 341
BstAUI TGTACA 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 253, 283
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 2 cut(s) 229, 237
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 1 cut(s) 257
BstMCI CGRYCG 1 cut(s) 153
BstMWI GCNNNNNNNGC 7 cut(s) 146, 158, 257, 263, 272, 278, 324
BstSFI CTRYAG 2 cut(s) 270, 276
BstV1I GCAGC 4 cut(s) 148, 244, 284, 330
BstZI CGGCCG 1 cut(s) 150
BsuRI GGCC 2 cut(s) 152, 266
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 2 cut(s) 229, 237
BtsI GCAGTG 2 cut(s) 267, 292
BtsIMutI CAGTG 2 cut(s) 267, 292
Cac8I GCNNGC 2 cut(s) 253, 283
CfoI GCGC 1 cut(s) 257
Csp6I GTAC 3 cut(s) 36, 85, 297
CspCI CAANNNNNGTGG 2 cut(s) 208, 243
CviAII CATG 1 cut(s) 95
CviQI GTAC 3 cut(s) 36, 85, 297
EaeI YGGCCR 2 cut(s) 150, 264
EagI CGGCCG 1 cut(s) 150
EclXI CGGCCG 1 cut(s) 150
Eco130I CCWWGG 2 cut(s) 94, 219
Eco52I CGGCCG 1 cut(s) 150
EcoT14I CCWWGG 2 cut(s) 94, 219
ErhI CCWWGG 2 cut(s) 94, 219
FaeI CATG 1 cut(s) 98
FaiI YATR 6 cut(s) 26, 33, 65, 83, 96, 135
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FatI CATG 1 cut(s) 94
FauI CCCGC 1 cut(s) 238
Fnu4HI GCNGC 5 cut(s) 150, 162, 258, 273, 319
FokI GGATG 2 cut(s) 236, 244
Fsp4HI GCNGC 5 cut(s) 150, 162, 258, 273, 319
FspBI CTAG 2 cut(s) 294, 300
GlaI GCGC 1 cut(s) 256
GluI GCNGC 5 cut(s) 150, 162, 258, 273, 319
HaeII RGCGCY 1 cut(s) 258
HaeIII GGCC 2 cut(s) 152, 266
HhaI GCGC 1 cut(s) 257
Hin1II CATG 1 cut(s) 98
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HinfI GANTC 1 cut(s) 124
HphI GGTGA 2 cut(s) 247, 347
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4V TGCA 1 cut(s) 272
HpyF10VI GCNNNNNNNGC 7 cut(s) 146, 158, 257, 263, 272, 278, 324
Hsp92II CATG 1 cut(s) 98
HspAI GCGC 1 cut(s) 255
LmnI GCTCC 2 cut(s) 248, 290
LpnPI CCDG 4 cut(s) 154, 237, 267, 315
Lsp1109I GCAGC 4 cut(s) 148, 244, 284, 330
MaeI CTAG 2 cut(s) 294, 300
MaeIII GTNAC 1 cut(s) 335
MboII GAAGA 1 cut(s) 133
MlsI TGGCCA 1 cut(s) 266
MluCI AATT 1 cut(s) 176
MluNI TGGCCA 1 cut(s) 266
MnlI CCTC 2 cut(s) 52, 197
Mox20I TGGCCA 1 cut(s) 266
MscI TGGCCA 1 cut(s) 266
MseI TTAA 1 cut(s) 309
Msp20I TGGCCA 1 cut(s) 266
MspA1I CMGCKG 2 cut(s) 275, 321
MwoI GCNNNNNNNGC 7 cut(s) 146, 158, 257, 263, 272, 278, 324
NcoI CCATGG 1 cut(s) 94
NlaIII CATG 1 cut(s) 98
NlaIV GGNNCC 2 cut(s) 113, 217
NmuCI GTSAC 1 cut(s) 335
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 5 cut(s) 151, 163, 259, 274, 320
PsiI TTATAA 1 cut(s) 65
PspN4I GGNNCC 2 cut(s) 113, 217
PstI CTGCAG 1 cut(s) 274
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 3 cut(s) 37, 86, 298
RsaNI GTAC 3 cut(s) 36, 85, 297
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 5 cut(s) 150, 162, 258, 273, 319
ScaI AGTACT 1 cut(s) 298
SetI ASST 5 cut(s) 163, 208, 253, 277, 295
SfcI CTRYAG 2 cut(s) 270, 276
SpeI ACTAGT 1 cut(s) 299
Sse9I AATT 1 cut(s) 176
SsiI CCGC 3 cut(s) 149, 245, 321
SspI AATATT 1 cut(s) 69
SspMI CTAG 2 cut(s) 294, 300
StyI CCWWGG 2 cut(s) 94, 219
TaaI ACNGT 1 cut(s) 341
TasI AATT 1 cut(s) 176
TatI WGTACW 2 cut(s) 84, 296
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 2 cut(s) 274, 292
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 4 cut(s) 161, 257, 272, 318
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 2 cut(s) 17, 150
TspRI CASTG 2 cut(s) 274, 292
XspI CTAG 2 cut(s) 294, 300
ZrmI AGTACT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.