Rorug07G0175900

Leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000487
Physical Location & Seq
Forward (+)
14551249 .. 14552175
927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0175900.1

Sequence Viewer

Length: 711 bp
ATGAACTCCAATTACCAGCTCTCAGACTCCAACCAGCAAAGCCTCGAATCAGTCTCCTCCATCAACAAGCCCGAGTCGTCTTCCTTATCTGACACGAGCTTCACGACTCATTGCGACGAAGCGGTGATACTTGCTTCGAGCAGGCCAAAGAAGCGAGCCGGTAGGCGAGTGTTCAAGGAGACTCGCCACCCGGTCTACCGGGGCGTGAGGCGCAGGAACAATAACAAGTGGGTGTGCGAGGTCAGGGAGCCGAACAAAAAGACCAGAATTTGGCTCGGGACGTACCCAACTCTTGAGATGGCAGCTCGGGCGCACGATGTGGCGGCGTTGGCCCTTAGGGGGAAGCAGGCATGCCTCAATTTTGCTGATTCCGTGTGGCGGTTGCCCATTCCGGCTTCTAAAGACCAGCTCGACATTCGCAGGGCCGCCGCCGAGGCTGCTGAGACATTTCGACCTGAGGAGTTCGGCGGCGTCTCGAGCAGCAGTGACGACAACGAGAGGGAGTATGAGGATGAGAATGTTGAGATGGACAACGAGAAGAAGAATGATGGCTTCTACGAGGATGAAGAGGCGCTCTTCGACATGCCCAGATTGCTGACTAGCATGGCGGAGTGTCCACTGCTCTCTCCGCCTCGTCATTACTCGGACGGTATGAACTGGGCAGACTATCAGGTGGAAAGCGAGTCAAATTTCAGCTTATGGAGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 Pkinase Pkinase_Tyr

Protein Analysis

236

Amino Acids

26.97

Weight (kDa)

5.2

Isoelectric Point (pI)

63.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 64 - 114 4.6e-16 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000487)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49760 AT5G49770
fragaria_vesca FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23881 FvH4_3g23881 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_5g27161 FvH4_5g27170
malus_domestica MD11G1206300.v1.1
prunus_persica Prupe.4G230700_v2.0.a1 Prupe.4G230700_v2.0.a1 Prupe.4G231100_v2.0.a1 Prupe.4G231100_v2.0.a1 Prupe.4G231100_v2.0.a1 Prupe.4G231100_v2.0.a1
pyrus_communis pycom11g17930
rosa_chinensis RchiOBHm_Chr5g0042211 RchiOBHm_Chr5g0042261 RchiOBHm_Chr5g0042271 RchiOBHm_Chr5g0042311 RchiOBHm_Chr5g0042381 RchiOBHm_Chr7g0218261
rosa_laevigata RLG00000002384 RLG00000002385 RLG00000034112 RLG00000034114 RLG00000034116 RLG00000034118
rosa_multiflora Rmu_sc0001715.1_g000008 Rmu_sc0001715.1_g000012 Rmu_sc0001715.1_g000026 Rmu_sc0004956.1_g000008
rosa_roxburghii Rroxscaffold_1G00038360 Rroxscaffold_1G00038390 Rroxscaffold_1G00038400 Rroxscaffold_1G00038450 Rroxscaffold_3G00241180
rosa_rugosa Rorug05G0198800 Rorug05G0199000 Rorug05G0199100.1 Rorug05G0199200 Rorug05G0199300 Rorug07G0175900
rosa_samantha Rh5AG283400 Rh5AG283900 Rh5AG284100 Rh5AG284300 Rh5AG284900 Rh5AG285300 Rh5AG285700 Rh5BG289300 Rh5BG289900 Rh5BG290200 Rh5BG290400 Rh5CG320700 Rh5CG321200 Rh5CG321500 Rh5CG322100 Rh5CG322400 Rh5DG298600 Rh5DG299100 Rh5DG299400 Rh5DG300200 Rh7AG317500 Rh7BG308900 Rh7CG334400 Rh7DG316500
rosa_wichuraiana Rw0G001480 Rw0G001500 Rw0G001750 Rw0G001780 Rw0G015430 Rw5G026520 Rw7G026960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 270
AccI GTMKAC 1 cut(s) 195
AciI CCGC 8 cut(s) 122, 323, 379, 426, 429, 468, 608, 629
AcsI RAATTY 2 cut(s) 267, 688
AcyI GRCGYC 1 cut(s) 471
AdeI CACNNNGTG 1 cut(s) 319
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 3 cut(s) 270, 339, 378
AgsI TTSAA 1 cut(s) 175
AluBI AGCT 6 cut(s) 19, 99, 305, 409, 696, 705
AluI AGCT 6 cut(s) 19, 99, 305, 409, 696, 705
Alw26I GTCTC 4 cut(s) 58, 173, 437, 478
Ama87I CYCGRG 4 cut(s) 71, 275, 306, 475
AoxI GGCC 3 cut(s) 143, 330, 423
ApeKI GCWGC 3 cut(s) 302, 437, 480
ApoI RAATTY 2 cut(s) 267, 688
AspLEI GCGC 3 cut(s) 213, 313, 574
AspS9I GGNCC 2 cut(s) 331, 423
AsuC2I CCSGG 2 cut(s) 191, 200
AsuHPI GGTGA 1 cut(s) 136
AvaI CYCGRG 4 cut(s) 71, 275, 306, 475
AxyI CCTNAGG 2 cut(s) 335, 456
BarI GAAGNNNNNNTAC 2 cut(s) 111, 143
BauI CACGAG 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 72
BbvI GCAGC 3 cut(s) 314, 424, 492
BccI CCATC 4 cut(s) 68, 292, 520, 542
BcnI CCSGG 2 cut(s) 191, 200
BcoDI GTCTC 4 cut(s) 58, 173, 437, 478
BfaI CTAG 1 cut(s) 600
BfoI RGCGCY 1 cut(s) 575
BglI GCCNNNNNGGC 1 cut(s) 434
BisI GCNGC 7 cut(s) 303, 324, 426, 429, 438, 469, 481
BlsI GCNGC 7 cut(s) 304, 325, 427, 430, 439, 470, 482
Bme1390I CCNGG 2 cut(s) 191, 200
BmeT110I CYCGRG 4 cut(s) 71, 275, 306, 475
BmgT120I GGNCC 2 cut(s) 331, 423
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 2 cut(s) 191, 200
BmrI ACTGGG 1 cut(s) 667
BmuI ACTGGG 1 cut(s) 667
BpiI GAAGAC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 314
BpuMI CCSGG 2 cut(s) 191, 200
BsaHI GRCGYC 1 cut(s) 471
BsaJI CCNNGG 2 cut(s) 199, 432
Bsc4I CCNNNNNNNGG 3 cut(s) 270, 339, 378
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 662
Bse21I CCTNAGG 2 cut(s) 335, 456
Bse3DI GCAATG 1 cut(s) 109
BseDI CCNNGG 2 cut(s) 199, 432
BseGI GGATG 2 cut(s) 517, 568
BseLI CCNNNNNNNGG 3 cut(s) 270, 339, 378
BseMI GCAATG 1 cut(s) 109
BseMII CTCAG 3 cut(s) 36, 432, 447
BseNI ACTGG 1 cut(s) 662
BseRI GAGGAG 2 cut(s) 46, 473
BseXI GCAGC 3 cut(s) 314, 424, 492
BshFI GGCC 3 cut(s) 145, 332, 425
BsiHKCI CYCGRG 4 cut(s) 71, 275, 306, 475
BsiSI CCGG 4 cut(s) 159, 191, 199, 392
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 3 cut(s) 270, 339, 378
BsmAI GTCTC 4 cut(s) 58, 173, 437, 478
BsmBI CGTCTC 1 cut(s) 478
BsmFI GGGAC 1 cut(s) 292
BsnI GGCC 3 cut(s) 145, 332, 425
BsoBI CYCGRG 4 cut(s) 71, 275, 306, 475
BspACI CCGC 8 cut(s) 122, 323, 379, 426, 429, 468, 608, 629
BspANI GGCC 3 cut(s) 145, 332, 425
BspCNI CTCAG 3 cut(s) 35, 433, 448
BspLI GGNNCC 1 cut(s) 249
BspQI GCTCTTC 1 cut(s) 581
BsrDI GCAATG 1 cut(s) 109
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 1 cut(s) 662
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 2 cut(s) 199, 432
BssNI GRCGYC 1 cut(s) 471
BssSI CACGAG 1 cut(s) 94
Bst2BI CACGAG 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 650
Bst6I CTCTTC 2 cut(s) 561, 581
BstACI GRCGYC 1 cut(s) 471
BstC8I GCNNGC 4 cut(s) 143, 156, 348, 352
BstDEI CTNAG 4 cut(s) 22, 335, 441, 456
BstF5I GGATG 2 cut(s) 517, 568
BstH2I RGCGCY 1 cut(s) 575
BstHHI GCGC 3 cut(s) 213, 313, 574
BstMAI GTCTC 4 cut(s) 58, 173, 437, 478
BstNSI RCATGY 2 cut(s) 354, 586
BstSCI CCNGG 2 cut(s) 189, 198
BstV1I GCAGC 3 cut(s) 314, 424, 492
BstV2I GAAGAC 1 cut(s) 72
Bsu36I CCTNAGG 2 cut(s) 335, 456
BsuRI GGCC 3 cut(s) 145, 332, 425
BtsCI GGATG 2 cut(s) 517, 568
BtsI GCAGTG 2 cut(s) 490, 617
BtsIMutI CAGTG 2 cut(s) 490, 617
Cac8I GCNNGC 4 cut(s) 143, 156, 348, 352
CfoI GCGC 3 cut(s) 213, 313, 574
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 2 cut(s) 331, 423
CseI GACGC 1 cut(s) 460
Csp6I GTAC 1 cut(s) 283
CviAII CATG 3 cut(s) 351, 583, 604
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 4 cut(s) 22, 335, 441, 456
DraIII CACNNNGTG 1 cut(s) 319
Eam1104I CTCTTC 2 cut(s) 561, 581
EarI CTCTTC 2 cut(s) 561, 581
EciI GGCGGA 2 cut(s) 618, 623
Eco81I CCTNAGG 2 cut(s) 335, 456
Eco88I CYCGRG 4 cut(s) 71, 275, 306, 475
Esp3I CGTCTC 1 cut(s) 478
FaeI CATG 3 cut(s) 354, 586, 607
FaiI YATR 6 cut(s) 352, 507, 584, 605, 653, 700
FaqI GGGAC 1 cut(s) 292
FatI CATG 3 cut(s) 350, 582, 603
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 7 cut(s) 303, 324, 426, 429, 438, 469, 481
FokI GGATG 2 cut(s) 524, 575
Fsp4HI GCNGC 7 cut(s) 303, 324, 426, 429, 438, 469, 481
FspBI CTAG 1 cut(s) 600
GlaI GCGC 3 cut(s) 212, 312, 573
GluI GCNGC 7 cut(s) 303, 324, 426, 429, 438, 469, 481
HaeII RGCGCY 1 cut(s) 575
HaeIII GGCC 3 cut(s) 145, 332, 425
HapII CCGG 4 cut(s) 159, 191, 199, 392
HgaI GACGC 1 cut(s) 460
HhaI GCGC 3 cut(s) 213, 313, 574
Hin1I GRCGYC 1 cut(s) 471
Hin1II CATG 3 cut(s) 354, 586, 607
Hin6I GCGC 3 cut(s) 211, 311, 572
HinP1I GCGC 3 cut(s) 211, 311, 572
HinfI GANTC 7 cut(s) 26, 47, 74, 106, 181, 368, 683
HpaII CCGG 4 cut(s) 159, 191, 199, 392
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 2 cut(s) 196, 617
Hpy188I TCNGA 3 cut(s) 25, 91, 646
Hpy188III TCNNGA 4 cut(s) 103, 277, 293, 475
Hpy8I GTNNAC 2 cut(s) 196, 617
Hpy99I CGWCG 1 cut(s) 119
HpyCH4III ACNGT 1 cut(s) 650
HpyCH4IV ACGT 1 cut(s) 281
HpyF3I CTNAG 4 cut(s) 22, 335, 441, 456
HpySE526I ACGT 1 cut(s) 281
Hsp92I GRCGYC 1 cut(s) 471
Hsp92II CATG 3 cut(s) 354, 586, 607
HspAI GCGC 3 cut(s) 211, 311, 572
LguI GCTCTTC 1 cut(s) 581
LmnI GCTCC 2 cut(s) 247, 702
Lsp1109I GCAGC 3 cut(s) 314, 424, 492
MaeI CTAG 1 cut(s) 600
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 485
MboII GAAGA 5 cut(s) 72, 550, 553, 568, 578
MluCI AATT 4 cut(s) 10, 267, 358, 688
MlyI GAGTC 5 cut(s) 20, 83, 100, 175, 692
MmeI TCCRAC 1 cut(s) 54
MspI CCGG 4 cut(s) 159, 191, 199, 392
MspR9I CCNGG 2 cut(s) 191, 200
NciI CCSGG 2 cut(s) 191, 200
NlaIII CATG 3 cut(s) 354, 586, 607
NlaIV GGNNCC 1 cut(s) 249
NmeAIII GCCGAG 1 cut(s) 457
NmuCI GTSAC 1 cut(s) 485
NspI RCATGY 2 cut(s) 354, 586
PaeI GCATGC 1 cut(s) 354
PaeR7I CTCGAG 1 cut(s) 475
PciSI GCTCTTC 1 cut(s) 581
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PfeI GAWTC 2 cut(s) 47, 368
PflMI CCANNNNNTGG 1 cut(s) 270
PkrI GCNGC 7 cut(s) 304, 325, 427, 430, 439, 470, 482
PleI GAGTC 5 cut(s) 20, 82, 100, 175, 691
PpsI GAGTC 5 cut(s) 20, 82, 100, 175, 691
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 2 cut(s) 331, 423
PsrI GAACNNNNNNTAC 1 cut(s) 28
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SapI GCTCTTC 1 cut(s) 581
SatI GCNGC 7 cut(s) 303, 324, 426, 429, 438, 469, 481
Sau96I GGNCC 2 cut(s) 331, 423
SchI GAGTC 5 cut(s) 20, 83, 100, 175, 692
ScrFI CCNGG 2 cut(s) 191, 200
Sfr274I CTCGAG 1 cut(s) 475
SlaI CTCGAG 1 cut(s) 475
SmlI CTYRAG 2 cut(s) 293, 475
SmoI CTYRAG 2 cut(s) 293, 475
SphI GCATGC 1 cut(s) 354
Sse9I AATT 4 cut(s) 10, 267, 358, 688
SsiI CCGC 8 cut(s) 122, 323, 379, 426, 429, 468, 608, 629
SspMI CTAG 1 cut(s) 600
StyD4I CCNGG 2 cut(s) 189, 198
TaaI ACNGT 1 cut(s) 650
TaiI ACGT 1 cut(s) 284
TaqI TCGA 6 cut(s) 45, 137, 411, 451, 476, 579
TasI AATT 4 cut(s) 10, 267, 358, 688
TauI GCSGC 4 cut(s) 326, 428, 431, 471
TfiI GAWTC 2 cut(s) 47, 368
TscAI CASTG 2 cut(s) 490, 624
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 3 cut(s) 302, 437, 480
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 3 cut(s) 17, 579, 668
TspGWI ACGGA 1 cut(s) 361
TspRI CASTG 2 cut(s) 490, 624
Van91I CCANNNNNTGG 1 cut(s) 270
XapI RAATTY 2 cut(s) 267, 688
XceI RCATGY 2 cut(s) 354, 586
XhoI CTCGAG 1 cut(s) 475
XmiI GTMKAC 1 cut(s) 195
XspI CTAG 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.