Rorug05G0199300

Leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000487
Physical Location & Seq
Forward (+)
19735938 .. 19738009
2072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0199300.1

Sequence Viewer

Length: 957 bp
ATGCTGAGCTTCGTCTCCGGAAGATGGAAGCCATCACCGAATCTTAGGTTTCTTCTTCAATCCAAGAGAAACCCAAAGGAGGAGAAATTATGCAGTTCCGCGGCTCTCCTGGTACTGCCAAATCCAAAGATGACGAGGCTGCTTGAGACGGAGACGAGCCCAGTTGCTGGAAGCATGTGGACGTGGCCGAGGTACCGAATAATTGAATTAATGCTTGATTCGATTCGATTTGAGATTGATGTTTCGTTGCATCTCCGAGAAAAGAATGAGTTTATTCCTTCTGATTTTTCCATTCGTTCTGATGGTCTTGATACTACATATACATCTTCTCCGAGATGTATACTTGATCAACCTTTGCTTAAGTTCTGGTACAAGCTTGATCGTACTTTTAAAGTTCCACGGGCAAATATATACTTTCGAATCAGTCTAAAGGGTGGATTTGATAACTTGAAGAGTTCTCTGTTGACTGTACTATATATCGACCTTCTTAGAGATGAGCTGAATGAGATTTTATATCAGGCCAGTTTTGCCCTGCTGGATACTTCTTTGTATGTGAATAATTACTATCTGGAACTAAAGTTGTGGGGCTTCAATGATAAGCTTCCAGCTGTATTGTCAACAATTCTGACAACAACCAAAAATTTCCTGCCAACTTATGATCGTTTCAAGAGATTCTACGATGTAGATGACCAGTTGCATGTTTTAAATGGATTGTCTGTTTCTGATGTGAAGTCATTTATTCTAGAGCTTTGGTCCCAGCTTTACATTGAAGGCCTTGGTCATGGAAATCTGTTAGAAGAAGAAGCAATTAGCCTTTTGAATATGGTGAAAACAATTTTTTCTGGACAACCACTTCCTACCGAACTGATGCTTAAGAACAATTGTAGTTGTCTCGCTCCTGATGCTAACCTCATTAGAGATGTCAGTGTAAGTATAAGACTGAAACAAACTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

318

Amino Acids

36.71

Weight (kDa)

7.61

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M16_M PF16187 78 - 227 4.7e-42 Middle or third domain of peptidase_M16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000487)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49760 AT5G49770
fragaria_vesca FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23881 FvH4_3g23881 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_5g27161 FvH4_5g27170
malus_domestica MD11G1206300.v1.1
prunus_persica Prupe.4G230700_v2.0.a1 Prupe.4G230700_v2.0.a1 Prupe.4G231100_v2.0.a1 Prupe.4G231100_v2.0.a1 Prupe.4G231100_v2.0.a1 Prupe.4G231100_v2.0.a1
pyrus_communis pycom11g17930
rosa_chinensis RchiOBHm_Chr5g0042211 RchiOBHm_Chr5g0042261 RchiOBHm_Chr5g0042271 RchiOBHm_Chr5g0042311 RchiOBHm_Chr5g0042381 RchiOBHm_Chr7g0218261
rosa_laevigata RLG00000002384 RLG00000002385 RLG00000034112 RLG00000034114 RLG00000034116 RLG00000034118
rosa_multiflora Rmu_sc0001715.1_g000008 Rmu_sc0001715.1_g000012 Rmu_sc0001715.1_g000026 Rmu_sc0004956.1_g000008
rosa_roxburghii Rroxscaffold_1G00038360 Rroxscaffold_1G00038390 Rroxscaffold_1G00038400 Rroxscaffold_1G00038450 Rroxscaffold_3G00241180
rosa_rugosa Rorug05G0198800 Rorug05G0199000 Rorug05G0199100.1 Rorug05G0199200 Rorug05G0199300 Rorug07G0175900
rosa_samantha Rh5AG283400 Rh5AG283900 Rh5AG284100 Rh5AG284300 Rh5AG284900 Rh5AG285300 Rh5AG285700 Rh5BG289300 Rh5BG289900 Rh5BG290200 Rh5BG290400 Rh5CG320700 Rh5CG321200 Rh5CG321500 Rh5CG322100 Rh5CG322400 Rh5DG298600 Rh5DG299100 Rh5DG299400 Rh5DG300200 Rh7AG317500 Rh7BG308900 Rh7CG334400 Rh7DG316500
rosa_wichuraiana Rw0G001480 Rw0G001500 Rw0G001750 Rw0G001780 Rw0G015430 Rw5G026520 Rw7G026960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 192
AccB1I GGYRCC 1 cut(s) 192
AccB7I CCANNNNNTGG 1 cut(s) 167
AccI GTMKAC 1 cut(s) 340
AccII CGCG 1 cut(s) 101
AccIII TCCGGA 1 cut(s) 17
AciI CCGC 2 cut(s) 99, 101
AcoI YGGCCR 1 cut(s) 185
AcsI RAATTY 1 cut(s) 640
AfaI GTAC 5 cut(s) 114, 194, 371, 385, 471
AfiI CCNNNNNNNGG 3 cut(s) 24, 79, 167
AflII CTTAAG 2 cut(s) 359, 872
AgsI TTSAA 7 cut(s) 59, 206, 451, 592, 667, 770, 820
AjiI CACGTC 1 cut(s) 183
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 7 cut(s) 9, 376, 499, 601, 608, 748, 760
AluI AGCT 7 cut(s) 9, 376, 499, 601, 608, 748, 760
Alw26I GTCTC 4 cut(s) 19, 140, 146, 896
AlwNI CAGNNNCTG 1 cut(s) 167
Aor13HI TCCGGA 1 cut(s) 17
AoxI GGCC 3 cut(s) 185, 519, 772
ApeKI GCWGC 1 cut(s) 139
ApoI RAATTY 1 cut(s) 640
AseI ATTAAT 1 cut(s) 209
Asp718I GGTACC 1 cut(s) 192
AspS9I GGNCC 1 cut(s) 753
AsuHPI GGTGA 2 cut(s) 27, 838
AsuII TTCGAA 1 cut(s) 418
AvaII GGWCC 1 cut(s) 753
BanI GGYRCC 1 cut(s) 192
BanII GRGCYC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 126
BccI CCATC 3 cut(s) 18, 40, 296
BciT130I CCWGG 1 cut(s) 110
BciVI GTATCC 1 cut(s) 532
BclI TGATCA 1 cut(s) 346
BcoDI GTCTC 4 cut(s) 19, 140, 146, 896
BfaI CTAG 1 cut(s) 743
BfrI CTTAAG 2 cut(s) 359, 872
BfuI GTATCC 1 cut(s) 532
BisI GCNGC 2 cut(s) 102, 140
BlpI GCTNAGC 1 cut(s) 5
BlsI GCNGC 2 cut(s) 103, 141
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 1 cut(s) 753
BmgBI CACGTC 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 753
BmiI GGNNCC 2 cut(s) 194, 755
BmrFI CCNGG 1 cut(s) 110
BmrI ACTGGG 1 cut(s) 155
BmsI GCATC 3 cut(s) 259, 858, 892
BmuI ACTGGG 1 cut(s) 155
Bpu1102I GCTNAGC 1 cut(s) 5
Bpu14I TTCGAA 1 cut(s) 418
BpuEI CTTGAG 1 cut(s) 164
BsaJI CCNNGG 4 cut(s) 99, 188, 398, 775
BsaWI WCCGGW 1 cut(s) 17
BsaXI ACNNNNNCTCC 2 cut(s) 313, 343
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 79, 167
Bse1I ACTGG 3 cut(s) 161, 522, 691
BseAI TCCGGA 1 cut(s) 17
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 4 cut(s) 99, 188, 398, 775
BseLI CCNNNNNNNGG 3 cut(s) 24, 79, 167
BseNI ACTGG 3 cut(s) 161, 522, 691
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 126
BseYI CCCAGC 1 cut(s) 756
Bsh1236I CGCG 1 cut(s) 101
BshFI GGCC 3 cut(s) 187, 521, 774
BshNI GGYRCC 1 cut(s) 192
BsiSI CCGG 1 cut(s) 18
BslFI GGGAC 1 cut(s) 739
BslI CCNNNNNNNGG 3 cut(s) 24, 79, 167
BsmAI GTCTC 4 cut(s) 19, 140, 146, 896
BsmBI CGTCTC 3 cut(s) 19, 140, 146
BsmFI GGGAC 1 cut(s) 739
BsnI GGCC 3 cut(s) 187, 521, 774
Bsp119I TTCGAA 1 cut(s) 418
Bsp1286I GDGCHC 1 cut(s) 161
Bsp13I TCCGGA 1 cut(s) 17
Bsp143I GATC 3 cut(s) 346, 379, 658
Bsp1720I GCTNAGC 1 cut(s) 5
BspACI CCGC 2 cut(s) 99, 101
BspANI GGCC 3 cut(s) 187, 521, 774
BspEI TCCGGA 1 cut(s) 17
BspFNI CGCG 1 cut(s) 101
BspLI GGNNCC 2 cut(s) 194, 755
BspT104I TTCGAA 1 cut(s) 418
BspT107I GGYRCC 1 cut(s) 192
BspTI CTTAAG 2 cut(s) 359, 872
BsrI ACTGG 3 cut(s) 161, 522, 691
BssECI CCNNGG 4 cut(s) 99, 188, 398, 775
BssMI GATC 3 cut(s) 346, 379, 658
BssNAI GTATAC 1 cut(s) 341
BssT1I CCWWGG 1 cut(s) 775
Bst1107I GTATAC 1 cut(s) 341
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 1 cut(s) 469
Bst6I CTCTTC 1 cut(s) 446
BstAFI CTTAAG 2 cut(s) 359, 872
BstBI TTCGAA 1 cut(s) 418
BstDEI CTNAG 3 cut(s) 5, 44, 488
BstDSI CCRYGG 2 cut(s) 99, 398
BstFNI CGCG 1 cut(s) 101
BstKTI GATC 3 cut(s) 349, 382, 661
BstMAI GTCTC 4 cut(s) 19, 140, 146, 896
BstMBI GATC 3 cut(s) 346, 379, 658
BstMWI GCNNNNNNNGC 2 cut(s) 527, 902
BstNI CCWGG 1 cut(s) 110
BstNSI RCATGY 2 cut(s) 178, 701
BstSCI CCNGG 1 cut(s) 108
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 126
BstZ17I GTATAC 1 cut(s) 341
BsuI GTATCC 1 cut(s) 532
BsuRI GGCC 3 cut(s) 187, 521, 774
BtgI CCRYGG 2 cut(s) 99, 398
BtrI CACGTC 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 931
CaiI CAGNNNCTG 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 753
Cfr42I CCGCGG 1 cut(s) 102
Csp6I GTAC 5 cut(s) 113, 193, 370, 384, 470
CviAII CATG 3 cut(s) 175, 698, 782
CviQI GTAC 5 cut(s) 113, 193, 370, 384, 470
DdeI CTNAG 3 cut(s) 5, 44, 488
DpnI GATC 3 cut(s) 348, 381, 660
DpnII GATC 3 cut(s) 346, 379, 658
DraI TTTAAA 2 cut(s) 391, 705
EaeI YGGCCR 1 cut(s) 185
Eam1104I CTCTTC 1 cut(s) 446
EarI CTCTTC 1 cut(s) 446
Eco130I CCWWGG 1 cut(s) 775
Eco147I AGGCCT 1 cut(s) 774
Eco24I GRGCYC 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 753
EcoRII CCWGG 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 775
EcoT38I GRGCYC 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 775
Esp3I CGTCTC 3 cut(s) 19, 140, 146
FaeI CATG 3 cut(s) 178, 701, 785
FaqI GGGAC 1 cut(s) 739
FatI CATG 3 cut(s) 174, 697, 781
FbaI TGATCA 1 cut(s) 346
FblI GTMKAC 1 cut(s) 340
Fnu4HI GCNGC 2 cut(s) 102, 140
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 2 cut(s) 102, 140
FspBI CTAG 1 cut(s) 743
GluI GCNGC 2 cut(s) 102, 140
GsaI CCCAGC 1 cut(s) 760
HaeIII GGCC 3 cut(s) 187, 521, 774
HapII CCGG 1 cut(s) 18
Hin1II CATG 3 cut(s) 178, 701, 785
HincII GTYRAC 2 cut(s) 465, 618
HindII GTYRAC 2 cut(s) 465, 618
HindIII AAGCTT 2 cut(s) 374, 599
HinfI GANTC 5 cut(s) 40, 218, 223, 420, 672
HpaII CCGG 1 cut(s) 18
HphI GGTGA 2 cut(s) 27, 838
Hpy166II GTNNAC 4 cut(s) 180, 341, 465, 618
Hpy188I TCNGA 6 cut(s) 257, 283, 301, 333, 627, 724
Hpy188III TCNNGA 7 cut(s) 18, 308, 569, 667, 743, 843, 899
Hpy8I GTNNAC 4 cut(s) 180, 341, 465, 618
HpyAV CCTTC 3 cut(s) 288, 494, 764
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4IV ACGT 1 cut(s) 182
HpyCH4V TGCA 3 cut(s) 93, 250, 697
HpyF10VI GCNNNNNNNGC 2 cut(s) 527, 902
HpyF3I CTNAG 3 cut(s) 5, 44, 488
HpySE526I ACGT 1 cut(s) 182
Hsp92II CATG 3 cut(s) 178, 701, 785
Kpn2I TCCGGA 1 cut(s) 17
KpnI GGTACC 1 cut(s) 196
Ksp22I TGATCA 1 cut(s) 346
KspI CCGCGG 1 cut(s) 102
Kzo9I GATC 3 cut(s) 346, 379, 658
LmnI GCTCC 1 cut(s) 901
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 3 cut(s) 259, 858, 892
MaeI CTAG 1 cut(s) 743
MaeII ACGT 1 cut(s) 182
MalI GATC 3 cut(s) 348, 381, 660
MboI GATC 3 cut(s) 346, 379, 658
MboII GAAGA 7 cut(s) 33, 44, 47, 318, 463, 809, 812
MfeI CAATTG 1 cut(s) 880
MhlI GDGCHC 1 cut(s) 161
MluCI AATT 9 cut(s) 86, 201, 206, 559, 621, 640, 807, 834, 880
MnlI CCTC 4 cut(s) 73, 129, 183, 920
MroI TCCGGA 1 cut(s) 17
MseI TTAA 5 cut(s) 209, 360, 390, 704, 873
MspA1I CMGCKG 2 cut(s) 101, 608
MspCI CTTAAG 2 cut(s) 359, 872
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 110
MunI CAATTG 1 cut(s) 880
MvaI CCWGG 1 cut(s) 110
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 527, 902
NdeII GATC 3 cut(s) 346, 379, 658
NlaIII CATG 3 cut(s) 178, 701, 785
NlaIV GGNNCC 2 cut(s) 194, 755
NmeAIII GCCGAG 1 cut(s) 213
NspI RCATGY 2 cut(s) 178, 701
NspV TTCGAA 1 cut(s) 418
PceI AGGCCT 1 cut(s) 774
PfeI GAWTC 5 cut(s) 40, 218, 223, 420, 672
PflMI CCANNNNNTGG 1 cut(s) 167
PkrI GCNGC 2 cut(s) 103, 141
PshBI ATTAAT 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 108
PspFI CCCAGC 1 cut(s) 756
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 2 cut(s) 194, 755
PspPI GGNCC 1 cut(s) 753
PstNI CAGNNNCTG 1 cut(s) 167
PvuII CAGCTG 1 cut(s) 608
RsaI GTAC 5 cut(s) 114, 194, 371, 385, 471
RsaNI GTAC 5 cut(s) 113, 193, 370, 384, 470
SacII CCGCGG 1 cut(s) 102
SaqAI TTAA 5 cut(s) 209, 360, 390, 704, 873
SatI GCNGC 2 cut(s) 102, 140
Sau3AI GATC 3 cut(s) 346, 379, 658
Sau96I GGNCC 1 cut(s) 753
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 1 cut(s) 161
SfaNI GCATC 3 cut(s) 259, 858, 892
Sfr303I CCGCGG 1 cut(s) 102
SfuI TTCGAA 1 cut(s) 418
SgrBI CCGCGG 1 cut(s) 102
SinI GGWCC 1 cut(s) 753
SmlI CTYRAG 3 cut(s) 143, 359, 872
SmoI CTYRAG 3 cut(s) 143, 359, 872
Sse9I AATT 9 cut(s) 86, 201, 206, 559, 621, 640, 807, 834, 880
SseBI AGGCCT 1 cut(s) 774
SsiI CCGC 2 cut(s) 99, 101
SspMI CTAG 1 cut(s) 743
StuI AGGCCT 1 cut(s) 774
StyD4I CCNGG 1 cut(s) 108
StyI CCWWGG 1 cut(s) 775
TaaI ACNGT 1 cut(s) 469
TaiI ACGT 1 cut(s) 185
TaqI TCGA 4 cut(s) 221, 226, 418, 480
TasI AATT 9 cut(s) 86, 201, 206, 559, 621, 640, 807, 834, 880
TatI WGTACW 1 cut(s) 469
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 5 cut(s) 40, 218, 223, 420, 672
Tru1I TTAA 5 cut(s) 209, 360, 390, 704, 873
Tru9I TTAA 5 cut(s) 209, 360, 390, 704, 873
TscAI CASTG 1 cut(s) 931
TseI GCWGC 1 cut(s) 139
TspGWI ACGGA 1 cut(s) 164
TspRI CASTG 1 cut(s) 931
Van91I CCANNNNNTGG 1 cut(s) 167
Vha464I CTTAAG 2 cut(s) 359, 872
VpaK11BI GGWCC 1 cut(s) 753
VspI ATTAAT 1 cut(s) 209
XapI RAATTY 1 cut(s) 640
XbaI TCTAGA 1 cut(s) 742
XceI RCATGY 2 cut(s) 178, 701
XmiI GTMKAC 1 cut(s) 340
XspI CTAG 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.