Rh5CG320700

Leucine-rich repeat receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
35525821 .. 35527717
1897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG320700.1

Sequence Viewer

Length: 1119 bp
ATGCTGAGTGGCCCGGTGCCGAACCTTACTGGCATGGATTCCCTCTATTATGTGGACATCAGCAATAATTCTTTTGATGCATCAGAGTTTCCGAATTGGTTTTCGACCTTGACGTTTTTGACAACATTAATGATGGAAAACATAGGACTTCAGGGACAAGTTCCTCGAGCCCTTTTCAGCCTTGAATATTTGGAGTCAGTGGTACTAAGAAACAACAATCTCAGTGATTCATTGGATATTGGAACCAATTATAGCAAACAATTGGAGCTAGTTGATCTGCAGAAGAACAACATTGCCGTTCTTGCACAGAACTATGATGGATCCAACTACACGCTGATTCTAGTTGAAAATCCAATTTGTGAGGGAAGCAAGTACAACATGGCAAAGAAATACTGTAATATTTCTCCACCAGATTCCTCAATTTCAACTCCAGGAAGTAACTGTCCTACTCCTGTCTGTAAATCCGACCAGGTTGCTTCCCCCAACTGTAATTGTGCAGTTCCCTACACAAAGACTCTAGTCTTCTTATTTGTTTCTTACTCAAACTTGGAAGACGTAAACTATTACATTCTTCTCGCGGAAAATCTCACAAGATCTTTACAGTCCCTCTACCTTCCTGTGGATTCAGTTTCTCTGAGTTATCCTAAATTGGACTCATCTTCTCAACTTGAACTGACAATACGAATTTTCCCATCTGGTGGTCAAGTTAGCTTCACCCAAGCAGAAAAGTCAGCTATATCAACTGTTCTTAGCAACCAGACTCTCGATGCACGTCCAAGATATTTTGGACCCTTCACTTTTCTTGTTCTTTACACCAACTCTGGAGGATCAAACAAGGCCGTGATAATAGGTACAGCAATTGGTGGTTCTGTGCTCCTTTCATTATTAGTCCTTGTAGGGCTTTATGCTCTCCACCAGAAGAGGAAAGCAGATGAGTCAATGAGTGGATCGATCCTTTTGACAGGGATTCCAAATAGCAGTGCTAGTGGTCCTCAACTAAAAGGAGCAAGATTGTTCTCATTTGAAGAGCTCAAGAAATGCACCGATGGTTTTTCAAAAGCAAAAGATATTGGATCTGGTGGTTATGGCCAGGTCAACTTTGATAATCTTGTATTATAA

Protein Analysis

372

Amino Acids

40.41

Weight (kDa)

4.97

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000487)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49760 AT5G49770
fragaria_vesca FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23881 FvH4_3g23881 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_5g27161 FvH4_5g27170
malus_domestica MD11G1206300.v1.1
prunus_persica Prupe.4G230700_v2.0.a1 Prupe.4G230700_v2.0.a1 Prupe.4G231100_v2.0.a1 Prupe.4G231100_v2.0.a1 Prupe.4G231100_v2.0.a1 Prupe.4G231100_v2.0.a1
pyrus_communis pycom11g17930
rosa_chinensis RchiOBHm_Chr5g0042211 RchiOBHm_Chr5g0042261 RchiOBHm_Chr5g0042271 RchiOBHm_Chr5g0042311 RchiOBHm_Chr5g0042381 RchiOBHm_Chr7g0218261
rosa_laevigata RLG00000002384 RLG00000002385 RLG00000034112 RLG00000034114 RLG00000034116 RLG00000034118
rosa_multiflora Rmu_sc0001715.1_g000008 Rmu_sc0001715.1_g000012 Rmu_sc0001715.1_g000026 Rmu_sc0004956.1_g000008
rosa_roxburghii Rroxscaffold_1G00038360 Rroxscaffold_1G00038390 Rroxscaffold_1G00038400 Rroxscaffold_1G00038450 Rroxscaffold_3G00241180
rosa_rugosa Rorug05G0198800 Rorug05G0199000 Rorug05G0199100.1 Rorug05G0199200 Rorug05G0199300 Rorug07G0175900
rosa_samantha Rh5AG283400 Rh5AG283900 Rh5AG284100 Rh5AG284300 Rh5AG284900 Rh5AG285300 Rh5AG285700 Rh5BG289300 Rh5BG289900 Rh5BG290200 Rh5BG290400 Rh5CG320700 Rh5CG321200 Rh5CG321500 Rh5CG322100 Rh5CG322400 Rh5DG298600 Rh5DG299100 Rh5DG299400 Rh5DG300200 Rh7AG317500 Rh7BG308900 Rh7CG334400 Rh7DG316500
rosa_wichuraiana Rw0G001480 Rw0G001500 Rw0G001750 Rw0G001780 Rw0G015430 Rw5G026520 Rw7G026960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1117
AccB1I GGYRCC 1 cut(s) 16
AccB7I CCANNNNNTGG 1 cut(s) 698
AccII CGCG 1 cut(s) 578
AciI CCGC 1 cut(s) 578
AclWI GGATC 6 cut(s) 315, 328, 835, 946, 955, 1081
AcoI YGGCCR 1 cut(s) 1087
AcsI RAATTY 1 cut(s) 684
AcuI CTGAAG 1 cut(s) 134
AfaI GTAC 3 cut(s) 204, 374, 853
AfiI CCNNNNNNNGG 2 cut(s) 619, 698
AgsI TTSAA 6 cut(s) 185, 347, 426, 671, 1025, 1056
AjiI CACGTC 1 cut(s) 773
AjnI CCWGG 3 cut(s) 430, 468, 1089
AluBI AGCT 4 cut(s) 268, 711, 734, 1030
AluI AGCT 4 cut(s) 268, 711, 734, 1030
Alw21I GWGCWC 2 cut(s) 876, 1032
AlwI GGATC 6 cut(s) 315, 328, 835, 946, 955, 1081
Ama87I CYCGRG 1 cut(s) 165
AoxI GGCC 3 cut(s) 10, 837, 1087
ApoI RAATTY 1 cut(s) 684
AseI ATTAAT 1 cut(s) 128
AspS9I GGNCC 3 cut(s) 11, 788, 989
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 706
AvaI CYCGRG 1 cut(s) 165
AvaII GGWCC 2 cut(s) 788, 989
BalI TGGCCA 1 cut(s) 1089
BamHI GGATCC 1 cut(s) 320
BanI GGYRCC 1 cut(s) 16
BanII GRGCYC 2 cut(s) 172, 1032
BbsI GAAGAC 2 cut(s) 514, 558
Bbv12I GWGCWC 2 cut(s) 876, 1032
BccI CCATC 4 cut(s) 127, 311, 700, 1040
BceAI ACGGC 2 cut(s) 281, 824
BcgI CGANNNNNNTGC 2 cut(s) 455, 489
BciT130I CCWGG 3 cut(s) 432, 470, 1091
BcnI CCSGG 1 cut(s) 14
BfaI CTAG 4 cut(s) 269, 341, 518, 984
BfmI CTRYAG 1 cut(s) 278
BglII AGATCT 1 cut(s) 593
Bme1390I CCNGG 4 cut(s) 14, 432, 470, 1091
Bme18I GGWCC 2 cut(s) 788, 989
BmeT110I CYCGRG 1 cut(s) 165
BmgBI CACGTC 1 cut(s) 773
BmgT120I GGNCC 3 cut(s) 11, 788, 989
BmiI GGNNCC 4 cut(s) 18, 244, 322, 790
BmrFI CCNGG 4 cut(s) 14, 432, 470, 1091
BmsI GCATC 3 cut(s) 67, 89, 757
BoxI GACNNNNGTC 1 cut(s) 518
BpiI GAAGAC 2 cut(s) 514, 558
BpmI CTGGAG 2 cut(s) 414, 843
BpuEI CTTGAG 1 cut(s) 1016
BpuMI CCSGG 1 cut(s) 14
Bsa29I ATCGAT 1 cut(s) 950
Bsc4I CCNNNNNNNGG 2 cut(s) 619, 698
Bse1I ACTGG 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 291
BseBI CCWGG 3 cut(s) 432, 470, 1091
BseCI ATCGAT 1 cut(s) 950
BseLI CCNNNNNNNGG 2 cut(s) 619, 698
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 2 cut(s) 235, 626
BseNI ACTGG 1 cut(s) 34
BsgI GTGCAG 1 cut(s) 516
Bsh1236I CGCG 1 cut(s) 578
BshFI GGCC 3 cut(s) 12, 839, 1089
BshNI GGYRCC 1 cut(s) 16
BshVI ATCGAT 1 cut(s) 950
BsiHKAI GWGCWC 2 cut(s) 876, 1032
BsiHKCI CYCGRG 1 cut(s) 165
BsiSI CCGG 1 cut(s) 14
BslFI GGGAC 2 cut(s) 168, 589
BslI CCNNNNNNNGG 2 cut(s) 619, 698
BsmFI GGGAC 2 cut(s) 168, 589
BsnI GGCC 3 cut(s) 12, 839, 1089
BsoBI CYCGRG 1 cut(s) 165
Bsp1286I GDGCHC 3 cut(s) 172, 876, 1032
Bsp143I GATC 7 cut(s) 274, 320, 593, 827, 947, 951, 1073
BspACI CCGC 1 cut(s) 578
BspANI GGCC 3 cut(s) 12, 839, 1089
BspCNI CTCAG 2 cut(s) 234, 627
BspDI ATCGAT 1 cut(s) 950
BspFNI CGCG 1 cut(s) 578
BspLI GGNNCC 4 cut(s) 18, 244, 322, 790
BspMAI CTGCAG 1 cut(s) 282
BspPI GGATC 6 cut(s) 315, 328, 835, 946, 955, 1081
BspQI GCTCTTC 1 cut(s) 1020
BspT107I GGYRCC 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 291
BsrI ACTGG 1 cut(s) 34
BssMI GATC 7 cut(s) 274, 320, 593, 827, 947, 951, 1073
Bst2UI CCWGG 3 cut(s) 432, 470, 1091
Bst4CI ACNGT 5 cut(s) 395, 443, 488, 603, 745
Bst6I CTCTTC 2 cut(s) 914, 1020
BstDEI CTNAG 5 cut(s) 5, 206, 221, 635, 749
BstFNI CGCG 1 cut(s) 578
BstKTI GATC 7 cut(s) 277, 323, 596, 830, 950, 954, 1076
BstMBI GATC 7 cut(s) 274, 320, 593, 827, 947, 951, 1073
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNI CCWGG 3 cut(s) 432, 470, 1091
BstPAI GACNNNNGTC 1 cut(s) 518
BstSCI CCNGG 4 cut(s) 12, 430, 468, 1089
BstSFI CTRYAG 1 cut(s) 278
BstUI CGCG 1 cut(s) 578
BstV2I GAAGAC 2 cut(s) 514, 558
BstX2I RGATCY 3 cut(s) 320, 593, 1073
BstYI RGATCY 3 cut(s) 320, 593, 1073
Bsu15I ATCGAT 1 cut(s) 950
BsuRI GGCC 3 cut(s) 12, 839, 1089
BsuTUI ATCGAT 1 cut(s) 950
BtrI CACGTC 1 cut(s) 773
BtsI GCAGTG 1 cut(s) 985
BtsIMutI CAGTG 3 cut(s) 204, 229, 985
Cfr13I GGNCC 3 cut(s) 11, 788, 989
ClaI ATCGAT 1 cut(s) 950
CsiI ACCWGGT 1 cut(s) 468
Csp6I GTAC 3 cut(s) 203, 373, 852
CviAII CATG 2 cut(s) 34, 379
CviQI GTAC 3 cut(s) 203, 373, 852
DdeI CTNAG 5 cut(s) 5, 206, 221, 635, 749
DpnI GATC 7 cut(s) 276, 322, 595, 829, 949, 953, 1075
DpnII GATC 7 cut(s) 274, 320, 593, 827, 947, 951, 1073
EaeI YGGCCR 1 cut(s) 1087
Eam1104I CTCTTC 2 cut(s) 914, 1020
EarI CTCTTC 2 cut(s) 914, 1020
Ecl136II GAGCTC 1 cut(s) 1030
Eco24I GRGCYC 2 cut(s) 172, 1032
Eco47I GGWCC 2 cut(s) 788, 989
Eco53kI GAGCTC 1 cut(s) 1030
Eco57I CTGAAG 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 165
EcoICRI GAGCTC 1 cut(s) 1030
EcoRII CCWGG 3 cut(s) 430, 468, 1089
EcoT22I ATGCAT 1 cut(s) 82
EcoT38I GRGCYC 2 cut(s) 172, 1032
FaeI CATG 2 cut(s) 37, 382
FaqI GGGAC 2 cut(s) 168, 589
FatI CATG 2 cut(s) 33, 378
FriOI GRGCYC 2 cut(s) 172, 1032
FspBI CTAG 4 cut(s) 269, 341, 518, 984
GsuI CTGGAG 2 cut(s) 414, 843
HaeIII GGCC 3 cut(s) 12, 839, 1089
HapII CCGG 1 cut(s) 14
Hin1II CATG 2 cut(s) 37, 382
HincII GTYRAC 1 cut(s) 1096
HindII GTYRAC 1 cut(s) 1096
HpaII CCGG 1 cut(s) 14
HphI GGTGA 1 cut(s) 706
Hpy166II GTNNAC 3 cut(s) 55, 559, 1096
Hpy188I TCNGA 4 cut(s) 85, 93, 466, 636
Hpy188III TCNNGA 3 cut(s) 764, 822, 1033
Hpy8I GTNNAC 3 cut(s) 55, 559, 1096
HpyAV CCTTC 2 cut(s) 623, 802
HpyCH4III ACNGT 5 cut(s) 395, 443, 488, 603, 745
HpyCH4IV ACGT 3 cut(s) 113, 555, 772
HpyCH4V TGCA 6 cut(s) 80, 280, 305, 497, 770, 1041
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 5 cut(s) 5, 206, 221, 635, 749
HpySE526I ACGT 3 cut(s) 113, 555, 772
Hsp92II CATG 2 cut(s) 37, 382
Kzo9I GATC 7 cut(s) 274, 320, 593, 827, 947, 951, 1073
LguI GCTCTTC 1 cut(s) 1020
LmnI GCTCC 3 cut(s) 265, 879, 1004
LweI GCATC 3 cut(s) 67, 89, 757
MabI ACCWGGT 1 cut(s) 468
MaeI CTAG 4 cut(s) 269, 341, 518, 984
MaeII ACGT 3 cut(s) 113, 555, 772
MaeIII GTNAC 1 cut(s) 437
MalI GATC 7 cut(s) 276, 322, 595, 829, 949, 953, 1075
MboI GATC 7 cut(s) 274, 320, 593, 827, 947, 951, 1073
MboII GAAGA 7 cut(s) 295, 514, 563, 563, 651, 931, 1037
MfeI CAATTG 2 cut(s) 260, 858
MflI RGATCY 3 cut(s) 320, 593, 1073
MhlI GDGCHC 3 cut(s) 172, 876, 1032
MlsI TGGCCA 1 cut(s) 1089
MluNI TGGCCA 1 cut(s) 1089
MlyI GAGTC 5 cut(s) 203, 508, 647, 754, 944
MmeI TCCRAC 2 cut(s) 348, 489
MnlI CCTC 8 cut(s) 53, 174, 355, 427, 617, 818, 915, 1002
Mox20I TGGCCA 1 cut(s) 1089
Mph1103I ATGCAT 1 cut(s) 82
MscI TGGCCA 1 cut(s) 1089
MseI TTAA 1 cut(s) 128
Msp20I TGGCCA 1 cut(s) 1089
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 4 cut(s) 14, 432, 470, 1091
MunI CAATTG 2 cut(s) 260, 858
MvaI CCWGG 3 cut(s) 432, 470, 1091
MvnI CGCG 1 cut(s) 578
MwoI GCNNNNNNNGC 1 cut(s) 302
NciI CCSGG 1 cut(s) 14
NdeII GATC 7 cut(s) 274, 320, 593, 827, 947, 951, 1073
NlaIII CATG 2 cut(s) 37, 382
NlaIV GGNNCC 4 cut(s) 18, 244, 322, 790
NsiI ATGCAT 1 cut(s) 82
PaeR7I CTCGAG 1 cut(s) 165
PciSI GCTCTTC 1 cut(s) 1020
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PfeI GAWTC 6 cut(s) 38, 227, 337, 413, 623, 967
PflMI CCANNNNNTGG 1 cut(s) 698
PfoI TCCNGGA 1 cut(s) 430
PleI GAGTC 5 cut(s) 202, 508, 647, 754, 943
PpsI GAGTC 5 cut(s) 202, 508, 647, 754, 943
PshAI GACNNNNGTC 1 cut(s) 518
PshBI ATTAAT 1 cut(s) 128
PsiI TTATAA 1 cut(s) 1117
Psp124BI GAGCTC 1 cut(s) 1032
Psp6I CCWGG 3 cut(s) 430, 468, 1089
PspGI CCWGG 3 cut(s) 430, 468, 1089
PspN4I GGNNCC 4 cut(s) 18, 244, 322, 790
PspPI GGNCC 3 cut(s) 11, 788, 989
PspXI VCTCGAGB 1 cut(s) 165
PsrI GAACNNNNNNTAC 2 cut(s) 663, 695
PstI CTGCAG 1 cut(s) 282
PsuI RGATCY 3 cut(s) 320, 593, 1073
RsaI GTAC 3 cut(s) 204, 374, 853
RsaNI GTAC 3 cut(s) 203, 373, 852
SacI GAGCTC 1 cut(s) 1032
SapI GCTCTTC 1 cut(s) 1020
SaqAI TTAA 1 cut(s) 128
Sau3AI GATC 7 cut(s) 274, 320, 593, 827, 947, 951, 1073
Sau96I GGNCC 3 cut(s) 11, 788, 989
SchI GAGTC 5 cut(s) 203, 508, 647, 754, 944
ScrFI CCNGG 4 cut(s) 14, 432, 470, 1091
SduI GDGCHC 3 cut(s) 172, 876, 1032
SexAI ACCWGGT 1 cut(s) 468
SfaNI GCATC 3 cut(s) 67, 89, 757
SfcI CTRYAG 1 cut(s) 278
Sfr274I CTCGAG 1 cut(s) 165
SinI GGWCC 2 cut(s) 788, 989
SlaI CTCGAG 1 cut(s) 165
SmlI CTYRAG 2 cut(s) 165, 1031
SmoI CTYRAG 2 cut(s) 165, 1031
SsiI CCGC 1 cut(s) 578
SspI AATATT 2 cut(s) 188, 400
SspMI CTAG 4 cut(s) 269, 341, 518, 984
SstI GAGCTC 1 cut(s) 1032
StyD4I CCNGG 4 cut(s) 12, 430, 468, 1089
TaaI ACNGT 5 cut(s) 395, 443, 488, 603, 745
TaiI ACGT 3 cut(s) 116, 558, 775
TaqI TCGA 4 cut(s) 104, 166, 765, 950
TatI WGTACW 1 cut(s) 372
TfiI GAWTC 6 cut(s) 38, 227, 337, 413, 623, 967
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TscAI CASTG 3 cut(s) 204, 229, 985
TspDTI ATGAA 2 cut(s) 219, 870
TspRI CASTG 3 cut(s) 204, 229, 985
Van91I CCANNNNNTGG 1 cut(s) 698
VpaK11BI GGWCC 2 cut(s) 788, 989
VspI ATTAAT 1 cut(s) 128
XapI RAATTY 1 cut(s) 684
XhoI CTCGAG 1 cut(s) 165
XspI CTAG 4 cut(s) 269, 341, 518, 984
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.