Rh5CG321500

Leucine-rich repeat receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
35575666 .. 35577577
1912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG321500.1

Sequence Viewer

Length: 1240 bp
ATGGAAAACACAGGACTTCAGGGACAAGTCCCTCAAGCCCTTTTCAGCCTTCAAAATTTGGAGACAGTGATACTGAAGAACAACAGTCTCAATGGTACATTGGATATTGGAACAAATTACGGCGACCAATTGAACCTAATTGATCTGCAGAAGAACAACATTGCTAATCTTGCACCAATTGATGAGGGATCCAACTACACATTGATTCTAGTTGACAATCCAATTTGTGAGGGGAGTCAGAATAACATGGCAAAGAACTACTGCAATGTTTCTCCTCCTAATTCCTCAATTTCAACTACACCAAGTAATTGTGCTGCCTGTAGTTCCGGCCAGGTTGCTTCCCCCAACTGTAAATGTGCATCTCCCTATACACGGACTCTAGTCTTCTTATTTGTTTCTTTCTCAAACTTGGATGACGTCAATTATTACAAAGCTCTCTCAGACAATCTCACAAGATCTTTTCAGTCCAAAAACCTTCCTGTGGATTCAGTTTCACTGAGTCATCCGAGCTGGAGCTCATCTTATCAACTTGAAATTATCATAGAAATTTTCCCATCCGGTGATCAAGTTAGCTTCAACCAAACAGAAAGTTCAGCGATTACATCTGTTATTAGCAACCAGACTCTAGAGGGACGTCCAAATTCTTTTGGACCCTACTCTTTTCTTGTTCTTTACACCAACTCTGGAGGATCAAACAAGGCCGTGATAATTGGAACGGCAATTGGTGGTTCTGTGCTCCTTTCATTATTAGTCCTTGTAGGGCTTTATGCTCTCCACCAGAAGAGAAAAGCAGATGAGTCATTGAGTGGATCGATCCTTTTGCAGACAGGGATTTCAAATAGCAGTGCTAATGGTCCTCAACTAAAAGGAGCAAGATTGTTCTCATTTGAAGAGCTCAAGAAATGCACCGATGGTTTTTCGGAAGCAAATGATATTGGATCTGGGGGTTATGGCCAGGTGTATAAGGGAATTCTTCCAACAGGCCAAATGGCTGCCATTAAAAGAGCTAAACGGGAATCTATGCAGGGAGGAGTTGAGTTCAAAGCCGAGATTGAGCTCCTATCACGAGTACATCATAAGAATCTTGTTGGCCTTGTAGGTTTTTGTTTTGAGCAAGGGGAACAAATATTGGTATATGAGTATGTTCCAAATGGTGATTTGAGGGACAGCCTTTCAGGGAAGTCCGGAATCAGGTTGGACTGGACAAGAAGACTTCAAGTAGCACTTGGTGCAGCGAGAG

Protein Analysis

413

Amino Acids

44.47

Weight (kDa)

5.69

Isoelectric Point (pI)

39.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 307 - 397 7e-14 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 310 - 409 2.1e-15 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000487)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49760 AT5G49770
fragaria_vesca FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23881 FvH4_3g23881 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_5g27161 FvH4_5g27170
malus_domestica MD11G1206300.v1.1
prunus_persica Prupe.4G230700_v2.0.a1 Prupe.4G230700_v2.0.a1 Prupe.4G231100_v2.0.a1 Prupe.4G231100_v2.0.a1 Prupe.4G231100_v2.0.a1 Prupe.4G231100_v2.0.a1
pyrus_communis pycom11g17930
rosa_chinensis RchiOBHm_Chr5g0042211 RchiOBHm_Chr5g0042261 RchiOBHm_Chr5g0042271 RchiOBHm_Chr5g0042311 RchiOBHm_Chr5g0042381 RchiOBHm_Chr7g0218261
rosa_laevigata RLG00000002384 RLG00000002385 RLG00000034112 RLG00000034114 RLG00000034116 RLG00000034118
rosa_multiflora Rmu_sc0001715.1_g000008 Rmu_sc0001715.1_g000012 Rmu_sc0001715.1_g000026 Rmu_sc0004956.1_g000008
rosa_roxburghii Rroxscaffold_1G00038360 Rroxscaffold_1G00038390 Rroxscaffold_1G00038400 Rroxscaffold_1G00038450 Rroxscaffold_3G00241180
rosa_rugosa Rorug05G0198800 Rorug05G0199000 Rorug05G0199100.1 Rorug05G0199200 Rorug05G0199300 Rorug07G0175900
rosa_samantha Rh5AG283400 Rh5AG283900 Rh5AG284100 Rh5AG284300 Rh5AG284900 Rh5AG285300 Rh5AG285700 Rh5BG289300 Rh5BG289900 Rh5BG290200 Rh5BG290400 Rh5CG320700 Rh5CG321200 Rh5CG321500 Rh5CG322100 Rh5CG322400 Rh5DG298600 Rh5DG299100 Rh5DG299400 Rh5DG300200 Rh7AG317500 Rh7BG308900 Rh7CG334400 Rh7DG316500
rosa_wichuraiana Rw0G001480 Rw0G001500 Rw0G001750 Rw0G001780 Rw0G015430 Rw5G026520 Rw7G026960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 420, 637
AccIII TCCGGA 1 cut(s) 1184
AclWI GGATC 6 cut(s) 183, 196, 697, 808, 817, 946
AcoI YGGCCR 2 cut(s) 328, 952
AcsI RAATTY 4 cut(s) 55, 546, 640, 969
AcuI CTGAAG 1 cut(s) 95
AcyI GRCGYC 2 cut(s) 417, 634
AdeI CACNNNGTG 1 cut(s) 1229
AfaI GTAC 2 cut(s) 97, 1071
AfiI CCNNNNNNNGG 3 cut(s) 372, 481, 1191
AgsI TTSAA 9 cut(s) 53, 133, 294, 533, 577, 837, 890, 1042, 1217
AjnI CCWGG 2 cut(s) 330, 954
AluBI AGCT 7 cut(s) 434, 510, 516, 573, 895, 1007, 1057
AluI AGCT 7 cut(s) 434, 510, 516, 573, 895, 1007, 1057
Alw21I GWGCWC 4 cut(s) 518, 738, 897, 1059
Alw26I GTCTC 2 cut(s) 56, 92
AlwI GGATC 6 cut(s) 183, 196, 697, 808, 817, 946
Aor13HI TCCGGA 1 cut(s) 1184
AoxI GGCC 5 cut(s) 328, 699, 952, 982, 1090
ApeKI GCWGC 3 cut(s) 314, 992, 1232
ApoI RAATTY 4 cut(s) 55, 546, 640, 969
AspS9I GGNCC 2 cut(s) 650, 854
AsuHPI GGTGA 2 cut(s) 572, 1166
AvaII GGWCC 2 cut(s) 650, 854
BalI TGGCCA 1 cut(s) 954
BamHI GGATCC 1 cut(s) 188
BanII GRGCYC 3 cut(s) 518, 897, 1059
BauI CACGAG 1 cut(s) 1065
BbsI GAAGAC 2 cut(s) 376, 1216
Bbv12I GWGCWC 4 cut(s) 518, 738, 897, 1059
BbvI GCAGC 2 cut(s) 301, 979
BccI CCATC 2 cut(s) 562, 905
BceAI ACGGC 3 cut(s) 136, 686, 732
BcgI CGANNNNNNTGC 2 cut(s) 802, 836
BciT130I CCWGG 2 cut(s) 332, 956
BclI TGATCA 1 cut(s) 562
BcoDI GTCTC 2 cut(s) 56, 92
BfaI CTAG 3 cut(s) 209, 380, 626
BfmI CTRYAG 2 cut(s) 146, 319
BglII AGATCT 1 cut(s) 455
BisI GCNGC 3 cut(s) 315, 993, 1233
BlsI GCNGC 3 cut(s) 316, 994, 1234
Bme1390I CCNGG 2 cut(s) 332, 956
Bme18I GGWCC 2 cut(s) 650, 854
BmgT120I GGNCC 2 cut(s) 650, 854
BmiI GGNNCC 2 cut(s) 190, 652
BmrFI CCNGG 2 cut(s) 332, 956
BmsI GCATC 1 cut(s) 368
BoxI GACNNNNGTC 1 cut(s) 380
BpiI GAAGAC 2 cut(s) 376, 1216
BpmI CTGGAG 2 cut(s) 532, 705
BpuEI CTTGAG 2 cut(s) 18, 881
Bsa29I ATCGAT 1 cut(s) 812
BsaHI GRCGYC 2 cut(s) 417, 634
BsaWI WCCGGW 2 cut(s) 557, 1184
Bsc4I CCNNNNNNNGG 3 cut(s) 372, 481, 1191
Bse1I ACTGG 1 cut(s) 1205
Bse3DI GCAATG 2 cut(s) 159, 271
BseAI TCCGGA 1 cut(s) 1184
BseBI CCWGG 2 cut(s) 332, 956
BseCI ATCGAT 1 cut(s) 812
BseGI GGATG 3 cut(s) 418, 502, 554
BseLI CCNNNNNNNGG 3 cut(s) 372, 481, 1191
BseMI GCAATG 2 cut(s) 159, 271
BseMII CTCAG 2 cut(s) 453, 488
BseNI ACTGG 1 cut(s) 1205
BseRI GAGGAG 2 cut(s) 264, 1044
BseXI GCAGC 2 cut(s) 301, 979
BshFI GGCC 5 cut(s) 330, 701, 954, 984, 1092
BshVI ATCGAT 1 cut(s) 812
BsiHKAI GWGCWC 4 cut(s) 518, 738, 897, 1059
BsiSI CCGG 3 cut(s) 327, 558, 1185
BslFI GGGAC 4 cut(s) 14, 36, 645, 1178
BslI CCNNNNNNNGG 3 cut(s) 372, 481, 1191
BsmAI GTCTC 2 cut(s) 56, 92
BsmFI GGGAC 4 cut(s) 14, 36, 645, 1178
BsnI GGCC 5 cut(s) 330, 701, 954, 984, 1092
Bsp1286I GDGCHC 4 cut(s) 518, 738, 897, 1059
Bsp13I TCCGGA 1 cut(s) 1184
Bsp143I GATC 8 cut(s) 142, 188, 455, 562, 689, 809, 813, 938
BspANI GGCC 5 cut(s) 330, 701, 954, 984, 1092
BspCNI CTCAG 2 cut(s) 452, 489
BspDI ATCGAT 1 cut(s) 812
BspEI TCCGGA 1 cut(s) 1184
BspLI GGNNCC 2 cut(s) 190, 652
BspMAI CTGCAG 1 cut(s) 150
BspPI GGATC 6 cut(s) 183, 196, 697, 808, 817, 946
BspQI GCTCTTC 1 cut(s) 885
BsrDI GCAATG 2 cut(s) 159, 271
BsrI ACTGG 1 cut(s) 1205
BssMI GATC 8 cut(s) 142, 188, 455, 562, 689, 809, 813, 938
BssNI GRCGYC 2 cut(s) 417, 634
BssSI CACGAG 1 cut(s) 1065
Bst2BI CACGAG 1 cut(s) 1065
Bst2UI CCWGG 2 cut(s) 332, 956
Bst4CI ACNGT 3 cut(s) 67, 86, 350
Bst6I CTCTTC 2 cut(s) 776, 885
BstACI GRCGYC 2 cut(s) 417, 634
BstAPI GCANNNNNTGC 1 cut(s) 1229
BstDEI CTNAG 2 cut(s) 439, 497
BstF5I GGATG 3 cut(s) 418, 502, 554
BstKTI GATC 8 cut(s) 145, 191, 458, 565, 692, 812, 816, 941
BstMAI GTCTC 2 cut(s) 56, 92
BstMBI GATC 8 cut(s) 142, 188, 455, 562, 689, 809, 813, 938
BstMWI GCNNNNNNNGC 2 cut(s) 170, 1229
BstNI CCWGG 2 cut(s) 332, 956
BstPAI GACNNNNGTC 1 cut(s) 380
BstSCI CCNGG 2 cut(s) 330, 954
BstSFI CTRYAG 2 cut(s) 146, 319
BstV1I GCAGC 2 cut(s) 301, 979
BstV2I GAAGAC 2 cut(s) 376, 1216
BstX2I RGATCY 3 cut(s) 188, 455, 938
BstYI RGATCY 3 cut(s) 188, 455, 938
Bsu15I ATCGAT 1 cut(s) 812
BsuRI GGCC 5 cut(s) 330, 701, 954, 984, 1092
BsuTUI ATCGAT 1 cut(s) 812
BtsCI GGATG 3 cut(s) 418, 502, 554
BtsI GCAGTG 1 cut(s) 850
BtsIMutI CAGTG 3 cut(s) 72, 494, 850
Cfr13I GGNCC 2 cut(s) 650, 854
ClaI ATCGAT 1 cut(s) 812
Csp6I GTAC 2 cut(s) 96, 1070
CviAII CATG 1 cut(s) 247
CviQI GTAC 2 cut(s) 96, 1070
DdeI CTNAG 2 cut(s) 439, 497
DpnI GATC 8 cut(s) 144, 190, 457, 564, 691, 811, 815, 940
DpnII GATC 8 cut(s) 142, 188, 455, 562, 689, 809, 813, 938
DraIII CACNNNGTG 1 cut(s) 1229
EaeI YGGCCR 2 cut(s) 328, 952
Eam1104I CTCTTC 2 cut(s) 776, 885
EarI CTCTTC 2 cut(s) 776, 885
Ecl136II GAGCTC 3 cut(s) 516, 895, 1057
Eco24I GRGCYC 3 cut(s) 518, 897, 1059
Eco47I GGWCC 2 cut(s) 650, 854
Eco53kI GAGCTC 3 cut(s) 516, 895, 1057
Eco57I CTGAAG 1 cut(s) 95
EcoICRI GAGCTC 3 cut(s) 516, 895, 1057
EcoRI GAATTC 1 cut(s) 969
EcoRII CCWGG 2 cut(s) 330, 954
EcoT38I GRGCYC 3 cut(s) 518, 897, 1059
FaeI CATG 1 cut(s) 250
FalI AAGNNNNNCTT 1 cut(s) 1209
FaqI GGGAC 4 cut(s) 14, 36, 645, 1178
FatI CATG 1 cut(s) 246
FbaI TGATCA 1 cut(s) 562
Fnu4HI GCNGC 3 cut(s) 315, 993, 1233
FokI GGATG 3 cut(s) 425, 489, 541
FriOI GRGCYC 3 cut(s) 518, 897, 1059
Fsp4HI GCNGC 3 cut(s) 315, 993, 1233
FspBI CTAG 3 cut(s) 209, 380, 626
GluI GCNGC 3 cut(s) 315, 993, 1233
GsuI CTGGAG 2 cut(s) 532, 705
HaeIII GGCC 5 cut(s) 330, 701, 954, 984, 1092
HapII CCGG 3 cut(s) 327, 558, 1185
Hin1I GRCGYC 2 cut(s) 417, 634
Hin1II CATG 1 cut(s) 250
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HpaII CCGG 3 cut(s) 327, 558, 1185
HphI GGTGA 2 cut(s) 572, 1166
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 4 cut(s) 240, 442, 507, 922
Hpy188III TCNNGA 5 cut(s) 626, 684, 898, 1065, 1185
Hpy8I GTNNAC 1 cut(s) 214
HpyAV CCTTC 2 cut(s) 59, 485
HpyCH4III ACNGT 3 cut(s) 67, 86, 350
HpyCH4IV ACGT 2 cut(s) 417, 634
HpyCH4V TGCA 8 cut(s) 148, 173, 264, 359, 823, 906, 1024, 1232
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 1229
HpyF3I CTNAG 2 cut(s) 439, 497
HpySE526I ACGT 2 cut(s) 417, 634
Hsp92I GRCGYC 2 cut(s) 417, 634
Hsp92II CATG 1 cut(s) 250
Kpn2I TCCGGA 1 cut(s) 1184
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 8 cut(s) 142, 188, 455, 562, 689, 809, 813, 938
LguI GCTCTTC 1 cut(s) 885
LmnI GCTCC 4 cut(s) 513, 741, 869, 1062
Lsp1109I GCAGC 2 cut(s) 301, 979
LweI GCATC 1 cut(s) 368
MaeI CTAG 3 cut(s) 209, 380, 626
MaeII ACGT 2 cut(s) 417, 634
MalI GATC 8 cut(s) 144, 190, 457, 564, 691, 811, 815, 940
MboI GATC 8 cut(s) 142, 188, 455, 562, 689, 809, 813, 938
MboII GAAGA 7 cut(s) 88, 163, 376, 793, 902, 965, 1221
MfeI CAATTG 3 cut(s) 128, 177, 720
MflI RGATCY 3 cut(s) 188, 455, 938
MhlI GDGCHC 4 cut(s) 518, 738, 897, 1059
MlsI TGGCCA 1 cut(s) 954
MluNI TGGCCA 1 cut(s) 954
MlyI GAGTC 5 cut(s) 244, 370, 508, 616, 806
MmeI TCCRAC 3 cut(s) 216, 1001, 1176
Mox20I TGGCCA 1 cut(s) 954
MroI TCCGGA 1 cut(s) 1184
MscI TGGCCA 1 cut(s) 954
MseI TTAA 1 cut(s) 999
Msp20I TGGCCA 1 cut(s) 954
MspI CCGG 3 cut(s) 327, 558, 1185
MspR9I CCNGG 2 cut(s) 332, 956
MunI CAATTG 3 cut(s) 128, 177, 720
MvaI CCWGG 2 cut(s) 332, 956
MwoI GCNNNNNNNGC 2 cut(s) 170, 1229
NdeII GATC 8 cut(s) 142, 188, 455, 562, 689, 809, 813, 938
NlaIII CATG 1 cut(s) 250
NlaIV GGNNCC 2 cut(s) 190, 652
NmeAIII GCCGAG 1 cut(s) 1072
PciSI GCTCTTC 1 cut(s) 885
PfeI GAWTC 5 cut(s) 205, 485, 1016, 1081, 1188
PkrI GCNGC 3 cut(s) 316, 994, 1234
PleI GAGTC 5 cut(s) 243, 370, 507, 616, 805
PpsI GAGTC 5 cut(s) 243, 370, 507, 616, 805
PshAI GACNNNNGTC 1 cut(s) 380
Psp124BI GAGCTC 3 cut(s) 518, 897, 1059
Psp6I CCWGG 2 cut(s) 330, 954
PspGI CCWGG 2 cut(s) 330, 954
PspN4I GGNNCC 2 cut(s) 190, 652
PspPI GGNCC 2 cut(s) 650, 854
PstI CTGCAG 1 cut(s) 150
PsuI RGATCY 3 cut(s) 188, 455, 938
RsaI GTAC 2 cut(s) 97, 1071
RsaNI GTAC 2 cut(s) 96, 1070
SacI GAGCTC 3 cut(s) 518, 897, 1059
SapI GCTCTTC 1 cut(s) 885
SaqAI TTAA 1 cut(s) 999
SatI GCNGC 3 cut(s) 315, 993, 1233
Sau3AI GATC 8 cut(s) 142, 188, 455, 562, 689, 809, 813, 938
Sau96I GGNCC 2 cut(s) 650, 854
SchI GAGTC 5 cut(s) 244, 370, 508, 616, 806
ScrFI CCNGG 2 cut(s) 332, 956
SduI GDGCHC 4 cut(s) 518, 738, 897, 1059
SfaNI GCATC 1 cut(s) 368
SfcI CTRYAG 2 cut(s) 146, 319
SinI GGWCC 2 cut(s) 650, 854
SmlI CTYRAG 2 cut(s) 33, 896
SmoI CTYRAG 2 cut(s) 33, 896
SspI AATATT 1 cut(s) 1128
SspMI CTAG 3 cut(s) 209, 380, 626
SstI GAGCTC 3 cut(s) 518, 897, 1059
StyD4I CCNGG 2 cut(s) 330, 954
TaaI ACNGT 3 cut(s) 67, 86, 350
TaiI ACGT 2 cut(s) 420, 637
TaqI TCGA 1 cut(s) 812
TatI WGTACW 1 cut(s) 1069
TfiI GAWTC 5 cut(s) 205, 485, 1016, 1081, 1188
Tru1I TTAA 1 cut(s) 999
Tru9I TTAA 1 cut(s) 999
TscAI CASTG 3 cut(s) 72, 501, 850
TseI GCWGC 3 cut(s) 314, 992, 1232
TspDTI ATGAA 1 cut(s) 732
TspGWI ACGGA 1 cut(s) 388
TspRI CASTG 3 cut(s) 72, 501, 850
VpaK11BI GGWCC 2 cut(s) 650, 854
XapI RAATTY 4 cut(s) 55, 546, 640, 969
XbaI TCTAGA 1 cut(s) 625
XspI CTAG 3 cut(s) 209, 380, 626
ZraI GACGTC 2 cut(s) 418, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.