Rorug05G0199200

Leucine-rich repeat receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
19721916 .. 19722683
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0199200.1

Sequence Viewer

Length: 501 bp
ATGGGTTCTAGCACCGCACAGTTAAGCATGATGGGCGATGATGATGAGTTGGGATTTGAAGCCTTCCAAACCAATGGTGCCATTCTCATGTCTTTACTGGAAGAATTTCAAGAAGAAGATAGTGACGATGAGGAAAGAGTAAATAGCCTAATCCAATCTCTGGAAGCGGAAATAACCAGTCCAAGTGCAGCGATGGACAACAATGGTTCGGGTTATATCGACTCGGAATTGACCATCAGAGATTTCGAAGAAGGCAACGACTACTCTGGTTCATTAGTTGATAGTGAGTTCGGGTGGTTTGATATGGAGCAGGTCCCTTGCTCACCAAGTGATGACATGAATTGGTATATGGATTCTTGTGAATATAAGATGGATTGTCTCAATGACTCTGGAATATGGGTTGGTGATTATTCTCATATTTGCTATGGAGCTGGCTTAGAAGATAATGGGTACAACTCAATATGGCAGGAAACTGCATATGATTCAATCATGTATGACTGA

Protein Analysis

166

Amino Acids

18.61

Weight (kDa)

4.05

Isoelectric Point (pI)

55.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000487)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49760 AT5G49770
fragaria_vesca FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23881 FvH4_3g23881 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_5g27161 FvH4_5g27170
malus_domestica MD11G1206300.v1.1
prunus_persica Prupe.4G230700_v2.0.a1 Prupe.4G230700_v2.0.a1 Prupe.4G231100_v2.0.a1 Prupe.4G231100_v2.0.a1 Prupe.4G231100_v2.0.a1 Prupe.4G231100_v2.0.a1
pyrus_communis pycom11g17930
rosa_chinensis RchiOBHm_Chr5g0042211 RchiOBHm_Chr5g0042261 RchiOBHm_Chr5g0042271 RchiOBHm_Chr5g0042311 RchiOBHm_Chr5g0042381 RchiOBHm_Chr7g0218261
rosa_laevigata RLG00000002384 RLG00000002385 RLG00000034112 RLG00000034114 RLG00000034116 RLG00000034118
rosa_multiflora Rmu_sc0001715.1_g000008 Rmu_sc0001715.1_g000012 Rmu_sc0001715.1_g000026 Rmu_sc0004956.1_g000008
rosa_roxburghii Rroxscaffold_1G00038360 Rroxscaffold_1G00038390 Rroxscaffold_1G00038400 Rroxscaffold_1G00038450 Rroxscaffold_3G00241180
rosa_rugosa Rorug05G0198800 Rorug05G0199000 Rorug05G0199100.1 Rorug05G0199200 Rorug05G0199300 Rorug07G0175900
rosa_samantha Rh5AG283400 Rh5AG283900 Rh5AG284100 Rh5AG284300 Rh5AG284900 Rh5AG285300 Rh5AG285700 Rh5BG289300 Rh5BG289900 Rh5BG290200 Rh5BG290400 Rh5CG320700 Rh5CG321200 Rh5CG321500 Rh5CG322100 Rh5CG322400 Rh5DG298600 Rh5DG299100 Rh5DG299400 Rh5DG300200 Rh7AG317500 Rh7BG308900 Rh7CG334400 Rh7DG316500
rosa_wichuraiana Rw0G001480 Rw0G001500 Rw0G001750 Rw0G001780 Rw0G015430 Rw5G026520 Rw7G026960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 301
AccB1I GGYRCC 1 cut(s) 77
AccB7I CCANNNNNTGG 1 cut(s) 160
AciI CCGC 2 cut(s) 15, 167
AcsI RAATTY 1 cut(s) 104
AdeI CACNNNGTG 1 cut(s) 329
AfaI GTAC 1 cut(s) 452
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 3 cut(s) 59, 110, 486
AluBI AGCT 1 cut(s) 431
AluI AGCT 1 cut(s) 431
Alw26I GTCTC 1 cut(s) 383
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 104
Asp700I GAANNNNTTC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 313
AsuHPI GGTGA 2 cut(s) 315, 416
AsuII TTCGAA 1 cut(s) 246
AvaII GGWCC 1 cut(s) 313
BanI GGYRCC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 200
BccI CCATC 4 cut(s) 25, 187, 242, 364
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 1 cut(s) 9
BfuAI ACCTGC 1 cut(s) 301
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 2 cut(s) 79, 315
Bpu14I TTCGAA 1 cut(s) 246
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse1I ACTGG 2 cut(s) 102, 177
BseLI CCNNNNNNNGG 1 cut(s) 160
BseNI ACTGG 2 cut(s) 102, 177
BseXI GCAGC 1 cut(s) 200
BsgI GTGCAG 1 cut(s) 207
BshNI GGYRCC 1 cut(s) 77
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 299
Bsp119I TTCGAA 1 cut(s) 246
BspACI CCGC 2 cut(s) 15, 167
BspLI GGNNCC 2 cut(s) 79, 315
BspMI ACCTGC 1 cut(s) 301
BspT104I TTCGAA 1 cut(s) 246
BspT107I GGYRCC 1 cut(s) 77
BsrI ACTGG 2 cut(s) 102, 177
Bst4CI ACNGT 1 cut(s) 21
BstBI TTCGAA 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 433
BstDEI CTNAG 1 cut(s) 436
BstMAI GTCTC 1 cut(s) 383
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 200
BstXI CCANNNNNNTGG 1 cut(s) 74
BtgZI GCGATG 2 cut(s) 51, 206
BveI ACCTGC 1 cut(s) 301
Cac8I GCNNGC 1 cut(s) 433
Cfr13I GGNCC 1 cut(s) 313
Csp6I GTAC 1 cut(s) 451
CviAII CATG 4 cut(s) 28, 88, 337, 490
CviJI RGCY 4 cut(s) 62, 147, 431, 435
CviKI_1 RGCY 4 cut(s) 62, 147, 431, 435
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 1 cut(s) 436
DraIII CACNNNGTG 1 cut(s) 329
Eco47I GGWCC 1 cut(s) 313
EcoO109I RGGNCCY 1 cut(s) 313
FaeI CATG 4 cut(s) 31, 91, 340, 493
FaqI GGGAC 1 cut(s) 299
FatI CATG 4 cut(s) 27, 87, 336, 489
FauNDI CATATG 1 cut(s) 478
Fnu4HI GCNGC 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 1 cut(s) 9
GluI GCNGC 1 cut(s) 189
Hin1II CATG 4 cut(s) 31, 91, 340, 493
HinfI GANTC 4 cut(s) 221, 353, 386, 482
HphI GGTGA 2 cut(s) 315, 416
Hpy188I TCNGA 2 cut(s) 226, 239
Hpy188III TCNNGA 3 cut(s) 110, 161, 390
HpyAV CCTTC 2 cut(s) 73, 245
HpyCH4III ACNGT 1 cut(s) 21
HpyCH4V TGCA 2 cut(s) 188, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpyF3I CTNAG 1 cut(s) 436
Hsp92II CATG 4 cut(s) 31, 91, 340, 493
LmnI GCTCC 2 cut(s) 307, 428
LpnPI CCDG 8 cut(s) 83, 146, 190, 252, 296, 375, 417, 452
Lsp1109I GCAGC 1 cut(s) 200
MaeI CTAG 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 122
MboII GAAGA 5 cut(s) 113, 125, 128, 260, 452
MluCI AATT 3 cut(s) 104, 227, 340
MlyI GAGTC 2 cut(s) 215, 380
MnlI CCTC 1 cut(s) 124
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 33
NdeI CATATG 1 cut(s) 478
NlaIII CATG 4 cut(s) 31, 91, 340, 493
NlaIV GGNNCC 2 cut(s) 79, 315
NmuCI GTSAC 1 cut(s) 122
NspV TTCGAA 1 cut(s) 246
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 2 cut(s) 353, 482
PflMI CCANNNNNTGG 1 cut(s) 160
PkrI GCNGC 1 cut(s) 190
PleI GAGTC 2 cut(s) 215, 380
PpsI GAGTC 2 cut(s) 215, 380
PpuMI RGGWCCY 1 cut(s) 313
Psp5II RGGWCCY 1 cut(s) 313
PspN4I GGNNCC 2 cut(s) 79, 315
PspPI GGNCC 1 cut(s) 313
PspPPI RGGWCCY 1 cut(s) 313
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
RseI CAYNNNNRTG 1 cut(s) 86
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 1 cut(s) 189
Sau96I GGNCC 1 cut(s) 313
SchI GAGTC 2 cut(s) 215, 380
SetI ASST 2 cut(s) 315, 433
SfuI TTCGAA 1 cut(s) 246
SinI GGWCC 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 86
Sse9I AATT 3 cut(s) 104, 227, 340
SsiI CCGC 2 cut(s) 15, 167
SspMI CTAG 1 cut(s) 9
TaaI ACNGT 1 cut(s) 21
TaqI TCGA 2 cut(s) 219, 246
TasI AATT 3 cut(s) 104, 227, 340
TfiI GAWTC 2 cut(s) 353, 482
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 2 cut(s) 261, 353
Van91I CCANNNNNTGG 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 313
XapI RAATTY 1 cut(s) 104
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.