Rh5CG321200

Leucine-rich repeat receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
35542496 .. 35545162
2667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG321200.1

Sequence Viewer

Length: 1692 bp
ATGATGGAAAACACAGGACTTCAGGGGCAAGTCCCTCAAGCCCTTTTCAGCCTTCAAAATTTGGAGACAGTGATACTAAAAAACAACAGTCTCAATGGTACATTGGATATTGGAACCAATATTGGCAACCAATTGAACCTAATTGATCTGCAGAAGAACAACATTGCTAATCTTGCACCAATTGATGAGGGATCCAACTACACATTGATTCTAGTTGACAATCCAATTTGTGAGGGGAGTCAGAATAACATGGCAAAGAACTACTGTAATGGTTCTCCTACTAATTCCTCGATTTCAACTACACCAAGTAATTGTGCTGGCTGTAGTTCAGGCCAGGTTGCTTCCCCCAACTGTAAATGTGCATCTCCCTATACACGGACTCTAGTCTTCTTATTTGTTTCTTTCTCAAACTTGGATGACATCAATTATTACAAAGCTCTCTCAAACAATCTCACAAGATCTCTTCACTCCAAAAACCTTCCTGTGGATTCAGTTTCACTGAGTCATCCGAGCTGGAGCTCATCTTATCAACTTGAAATTATCATAGAAATTTTCCCATCTGGTGATCAAGTTAGCTTCAACCAAACAGAAAGTTCGGCGATTACATCTGTTCTTAGCAACCAGAGTCTAGAGGGACGTCCAAATTCTTTTGGACCCTACTCTTTTCTTGTTCTTTACACCAACTCTGGAGGATCAAACAAGGGCGTGATAATTGGAACGGCAATTGGTGGTTCTGTACTCCTTTCATTATTAGTCCTTGTAGGGCTTTATGCTCTCCACCAGAAGAGGAAAGCAGATGAGTCAAAGAGTACTGGATCGATCCTTTTGACAGGGATTCCAAATAGCAGTGCTAGGGGTCCTCAACTAAAAGGAGCAAGATTGTTCTCATTTGAAGAGCTCAAGAAATGCACCGATGGTTTTTCAAAAGCAAATGATATTGGATCTGGGGGTTATGGCCAGGTGTATAAGGGAATTCTTCCAACAGGCCAAATGGTTGCCATTAAAAGAGCTAAACGGGAATCTATGCAGGGAGGAGTTGAGTTCAATGCCGAGGTTGAGCTCCTATCACGAGTACATCATAAGAATCTTGTTGGCCTTGTAGGCTTTTGTTTTGAGCAAGGAGAACAAATATTGGTATATGAGTATGTTCCAAATGGTGATTTGAGGGACAGCCTATCAGGGAAGTCCGGAATCAGTGGAATGGATCACTTATCTACTCAAGTTAAAGGGACACTGGGCTACTTGGATCCTGAATATTATATGACTCAACAGTTGACTGACAAGAGCGACGTGTATAGCTTTGGCGTGGTAATGTTGGAGCTGATAACTGCTAGAAGGCCAATAATGCAAGGGAATTATATAGTGAGAGTGGTACAGATGACAATGGATAAGTCGAAAGATTTGTACAACCTTGATGACATTCTTGATCCATTCATTGGTTTAGGAACAGAGCTGAAAGGTGTAGAAATGTTTGTGGATTTGGCAATGTCTTGTGTAGAAGAACTAAGGGATAAAAGACCAAGAATGGGGGAAGTGGTGAAACAGATAGAGAACATTATACAAATTGCTGCTTTGAACGGCGGTACTAATCCATTGTCCACTTCAGCAAGTTATGAGGAATATGACTGTAAGGACAGCACCGAGGATGTTTACAGCAGACCCTTTGATTATAGTGGAGTTTTTGACGGATGA

Protein Analysis

563

Amino Acids

61.21

Weight (kDa)

5.04

Isoelectric Point (pI)

36.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 308 - 398 3.7e-14 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 310 - 396 6.7e-16 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 405 - 514 4.6e-07 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 407 - 515 1.2e-06 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000487)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49760 AT5G49770
fragaria_vesca FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23881 FvH4_3g23881 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_5g27161 FvH4_5g27170
malus_domestica MD11G1206300.v1.1
prunus_persica Prupe.4G230700_v2.0.a1 Prupe.4G230700_v2.0.a1 Prupe.4G231100_v2.0.a1 Prupe.4G231100_v2.0.a1 Prupe.4G231100_v2.0.a1 Prupe.4G231100_v2.0.a1
pyrus_communis pycom11g17930
rosa_chinensis RchiOBHm_Chr5g0042211 RchiOBHm_Chr5g0042261 RchiOBHm_Chr5g0042271 RchiOBHm_Chr5g0042311 RchiOBHm_Chr5g0042381 RchiOBHm_Chr7g0218261
rosa_laevigata RLG00000002384 RLG00000002385 RLG00000034112 RLG00000034114 RLG00000034116 RLG00000034118
rosa_multiflora Rmu_sc0001715.1_g000008 Rmu_sc0001715.1_g000012 Rmu_sc0001715.1_g000026 Rmu_sc0004956.1_g000008
rosa_roxburghii Rroxscaffold_1G00038360 Rroxscaffold_1G00038390 Rroxscaffold_1G00038400 Rroxscaffold_1G00038450 Rroxscaffold_3G00241180
rosa_rugosa Rorug05G0198800 Rorug05G0199000 Rorug05G0199100.1 Rorug05G0199200 Rorug05G0199300 Rorug07G0175900
rosa_samantha Rh5AG283400 Rh5AG283900 Rh5AG284100 Rh5AG284300 Rh5AG284900 Rh5AG285300 Rh5AG285700 Rh5BG289300 Rh5BG289900 Rh5BG290200 Rh5BG290400 Rh5CG320700 Rh5CG321200 Rh5CG321500 Rh5CG322100 Rh5CG322400 Rh5DG298600 Rh5DG299100 Rh5DG299400 Rh5DG300200 Rh7AG317500 Rh7BG308900 Rh7CG334400 Rh7DG316500
rosa_wichuraiana Rw0G001480 Rw0G001500 Rw0G001750 Rw0G001780 Rw0G015430 Rw5G026520 Rw7G026960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 640
AccB7I CCANNNNNTGG 1 cut(s) 1436
AccIII TCCGGA 1 cut(s) 1187
AciI CCGC 1 cut(s) 1581
AcoI YGGCCR 1 cut(s) 955
AcsI RAATTY 4 cut(s) 58, 549, 643, 972
AcuI CTGAAG 2 cut(s) 5, 1587
AcyI GRCGYC 1 cut(s) 637
AfaI GTAC 7 cut(s) 100, 738, 811, 1074, 1374, 1406, 1585
AfiI CCNNNNNNNGG 4 cut(s) 375, 484, 1436, 1526
AflIII ACRYGT 1 cut(s) 1290
AgsI TTSAA 9 cut(s) 56, 136, 297, 536, 580, 893, 924, 1045, 1576
AjiI CACGTC 1 cut(s) 1291
AjnI CCWGG 2 cut(s) 333, 957
Alw21I GWGCWC 3 cut(s) 521, 900, 1062
Alw26I GTCTC 2 cut(s) 59, 95
Aor13HI TCCGGA 1 cut(s) 1187
AoxI GGCC 5 cut(s) 331, 955, 985, 1093, 1337
ApeKI GCWGC 1 cut(s) 1568
ApoI RAATTY 4 cut(s) 58, 549, 643, 972
AspS9I GGNCC 2 cut(s) 653, 857
AsuHPI GGTGA 3 cut(s) 575, 1169, 1549
AvaII GGWCC 2 cut(s) 653, 857
BalI TGGCCA 1 cut(s) 957
BamHI GGATCC 2 cut(s) 191, 1246
BanII GRGCYC 3 cut(s) 521, 900, 1062
BauI CACGAG 1 cut(s) 1068
BbsI GAAGAC 1 cut(s) 379
Bbv12I GWGCWC 3 cut(s) 521, 900, 1062
BbvI GCAGC 1 cut(s) 1555
BccI CCATC 2 cut(s) 565, 908
BceAI ACGGC 2 cut(s) 735, 1594
BciT130I CCWGG 2 cut(s) 335, 959
BclI TGATCA 1 cut(s) 565
BcoDI GTCTC 2 cut(s) 59, 95
BfaI CTAG 5 cut(s) 212, 383, 629, 852, 1332
BfmI CTRYAG 2 cut(s) 149, 322
BglI GCCNNNNNGGC 1 cut(s) 1101
BglII AGATCT 1 cut(s) 458
BisI GCNGC 1 cut(s) 1569
BlsI GCNGC 1 cut(s) 1570
BmcAI AGTACT 1 cut(s) 811
Bme1390I CCNGG 2 cut(s) 335, 959
Bme18I GGWCC 2 cut(s) 653, 857
BmgBI CACGTC 1 cut(s) 1291
BmgT120I GGNCC 2 cut(s) 653, 857
BmiI GGNNCC 5 cut(s) 115, 193, 655, 858, 1248
BmrFI CCNGG 2 cut(s) 335, 959
BmrI ACTGGG 1 cut(s) 1244
BmsI GCATC 1 cut(s) 371
BmuI ACTGGG 1 cut(s) 1244
BoxI GACNNNNGTC 1 cut(s) 383
BpiI GAAGAC 1 cut(s) 379
BpmI CTGGAG 2 cut(s) 535, 708
BpuEI CTTGAG 3 cut(s) 21, 884, 1203
Bsa29I ATCGAT 1 cut(s) 818
BsaHI GRCGYC 1 cut(s) 637
BsaJI CCNNGG 2 cut(s) 1050, 1641
BsaWI WCCGGW 1 cut(s) 1187
Bsc4I CCNNNNNNNGG 4 cut(s) 375, 484, 1436, 1526
Bse1I ACTGG 2 cut(s) 817, 1239
Bse3DI GCAATG 2 cut(s) 162, 1491
BseAI TCCGGA 1 cut(s) 1187
BseBI CCWGG 2 cut(s) 335, 959
BseCI ATCGAT 1 cut(s) 818
BseDI CCNNGG 2 cut(s) 1050, 1641
BseGI GGATG 3 cut(s) 421, 505, 1651
BseLI CCNNNNNNNGG 4 cut(s) 375, 484, 1436, 1526
BseMI GCAATG 2 cut(s) 162, 1491
BseMII CTCAG 1 cut(s) 491
BseNI ACTGG 2 cut(s) 817, 1239
BseRI GAGGAG 1 cut(s) 1047
BseXI GCAGC 1 cut(s) 1555
BshFI GGCC 5 cut(s) 333, 957, 987, 1095, 1339
BshVI ATCGAT 1 cut(s) 818
BsiHKAI GWGCWC 3 cut(s) 521, 900, 1062
BsiSI CCGG 1 cut(s) 1188
BslFI GGGAC 4 cut(s) 17, 648, 1181, 1243
BslI CCNNNNNNNGG 4 cut(s) 375, 484, 1436, 1526
BsmAI GTCTC 2 cut(s) 59, 95
BsmFI GGGAC 4 cut(s) 17, 648, 1181, 1243
BsnI GGCC 5 cut(s) 333, 957, 987, 1095, 1339
Bsp1286I GDGCHC 3 cut(s) 521, 900, 1062
Bsp13I TCCGGA 1 cut(s) 1187
Bsp1407I TGTACA 1 cut(s) 1404
BspACI CCGC 1 cut(s) 1581
BspANI GGCC 5 cut(s) 333, 957, 987, 1095, 1339
BspCNI CTCAG 1 cut(s) 492
BspDI ATCGAT 1 cut(s) 818
BspEI TCCGGA 1 cut(s) 1187
BspLI GGNNCC 5 cut(s) 115, 193, 655, 858, 1248
BspMAI CTGCAG 1 cut(s) 153
BspQI GCTCTTC 1 cut(s) 888
BsrDI GCAATG 2 cut(s) 162, 1491
BsrGI TGTACA 1 cut(s) 1404
BsrI ACTGG 2 cut(s) 817, 1239
BssECI CCNNGG 2 cut(s) 1050, 1641
BssNI GRCGYC 1 cut(s) 637
BssSI CACGAG 1 cut(s) 1068
Bst2BI CACGAG 1 cut(s) 1068
Bst2UI CCWGG 2 cut(s) 335, 959
Bst4CI ACNGT 6 cut(s) 70, 89, 266, 353, 1272, 1628
Bst6I CTCTTC 3 cut(s) 468, 779, 888
BstACI GRCGYC 1 cut(s) 637
BstAUI TGTACA 1 cut(s) 1404
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 3 cut(s) 500, 614, 1505
BstF5I GGATG 3 cut(s) 421, 505, 1651
BstMAI GTCTC 2 cut(s) 59, 95
BstMWI GCNNNNNNNGC 3 cut(s) 173, 1101, 1345
BstNI CCWGG 2 cut(s) 335, 959
BstPAI GACNNNNGTC 1 cut(s) 383
BstSCI CCNGG 2 cut(s) 333, 957
BstSFI CTRYAG 2 cut(s) 149, 322
BstV1I GCAGC 1 cut(s) 1555
BstV2I GAAGAC 1 cut(s) 379
BstX2I RGATCY 4 cut(s) 191, 458, 941, 1246
BstYI RGATCY 4 cut(s) 191, 458, 941, 1246
Bsu15I ATCGAT 1 cut(s) 818
BsuRI GGCC 5 cut(s) 333, 957, 987, 1095, 1339
BsuTUI ATCGAT 1 cut(s) 818
BtrI CACGTC 1 cut(s) 1291
BtsCI GGATG 3 cut(s) 421, 505, 1651
BtsI GCAGTG 1 cut(s) 853
BtsIMutI CAGTG 5 cut(s) 75, 497, 853, 1201, 1232
Cac8I GCNNGC 1 cut(s) 319
Cfr13I GGNCC 2 cut(s) 653, 857
ClaI ATCGAT 1 cut(s) 818
Csp6I GTAC 7 cut(s) 99, 737, 810, 1073, 1373, 1405, 1584
CviAII CATG 1 cut(s) 250
CviQI GTAC 7 cut(s) 99, 737, 810, 1073, 1373, 1405, 1584
DdeI CTNAG 3 cut(s) 500, 614, 1505
EaeI YGGCCR 1 cut(s) 955
Eam1104I CTCTTC 3 cut(s) 468, 779, 888
EarI CTCTTC 3 cut(s) 468, 779, 888
Ecl136II GAGCTC 3 cut(s) 519, 898, 1060
Eco24I GRGCYC 3 cut(s) 521, 900, 1062
Eco47I GGWCC 2 cut(s) 653, 857
Eco53kI GAGCTC 3 cut(s) 519, 898, 1060
Eco57I CTGAAG 2 cut(s) 5, 1587
EcoICRI GAGCTC 3 cut(s) 519, 898, 1060
EcoO109I RGGNCCY 1 cut(s) 857
EcoRI GAATTC 1 cut(s) 972
EcoRII CCWGG 2 cut(s) 333, 957
EcoT38I GRGCYC 3 cut(s) 521, 900, 1062
FaeI CATG 1 cut(s) 253
FaqI GGGAC 4 cut(s) 17, 648, 1181, 1243
FatI CATG 1 cut(s) 249
FbaI TGATCA 1 cut(s) 565
Fnu4HI GCNGC 1 cut(s) 1569
FokI GGATG 3 cut(s) 428, 492, 1658
FriOI GRGCYC 3 cut(s) 521, 900, 1062
Fsp4HI GCNGC 1 cut(s) 1569
FspBI CTAG 5 cut(s) 212, 383, 629, 852, 1332
GluI GCNGC 1 cut(s) 1569
GsuI CTGGAG 2 cut(s) 535, 708
HaeIII GGCC 5 cut(s) 333, 957, 987, 1095, 1339
HapII CCGG 1 cut(s) 1188
Hin1I GRCGYC 1 cut(s) 637
Hin1II CATG 1 cut(s) 253
HincII GTYRAC 2 cut(s) 217, 1275
HindII GTYRAC 2 cut(s) 217, 1275
HpaII CCGG 1 cut(s) 1188
HphI GGTGA 3 cut(s) 575, 1169, 1549
Hpy166II GTNNAC 4 cut(s) 217, 1275, 1599, 1651
Hpy188I TCNGA 2 cut(s) 243, 510
Hpy188III TCNNGA 7 cut(s) 629, 687, 901, 1068, 1188, 1250, 1424
Hpy8I GTNNAC 4 cut(s) 217, 1275, 1599, 1651
Hpy99I CGWCG 1 cut(s) 1292
HpyAV CCTTC 3 cut(s) 62, 488, 1329
HpyCH4III ACNGT 6 cut(s) 70, 89, 266, 353, 1272, 1628
HpyCH4IV ACGT 2 cut(s) 637, 1290
HpyCH4V TGCA 6 cut(s) 151, 176, 362, 909, 1027, 1348
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 1101, 1345
HpyF3I CTNAG 3 cut(s) 500, 614, 1505
HpySE526I ACGT 2 cut(s) 637, 1290
Hsp92I GRCGYC 1 cut(s) 637
Hsp92II CATG 1 cut(s) 253
Kpn2I TCCGGA 1 cut(s) 1187
Ksp22I TGATCA 1 cut(s) 565
LguI GCTCTTC 1 cut(s) 888
LmnI GCTCC 4 cut(s) 516, 872, 1065, 1318
Lsp1109I GCAGC 1 cut(s) 1555
LweI GCATC 1 cut(s) 371
MaeI CTAG 5 cut(s) 212, 383, 629, 852, 1332
MaeII ACGT 2 cut(s) 637, 1290
MboII GAAGA 7 cut(s) 166, 379, 455, 796, 905, 968, 1511
MfeI CAATTG 3 cut(s) 131, 180, 723
MflI RGATCY 4 cut(s) 191, 458, 941, 1246
MhlI GDGCHC 3 cut(s) 521, 900, 1062
MlsI TGGCCA 1 cut(s) 957
MluNI TGGCCA 1 cut(s) 957
MlyI GAGTC 6 cut(s) 247, 373, 511, 634, 809, 1258
MmeI TCCRAC 3 cut(s) 219, 1004, 1296
Mox20I TGGCCA 1 cut(s) 957
MroI TCCGGA 1 cut(s) 1187
MscI TGGCCA 1 cut(s) 957
MseI TTAA 2 cut(s) 1002, 1224
Msp20I TGGCCA 1 cut(s) 957
MspI CCGG 1 cut(s) 1188
MspR9I CCNGG 2 cut(s) 335, 959
MunI CAATTG 3 cut(s) 131, 180, 723
MvaI CCWGG 2 cut(s) 335, 959
MwoI GCNNNNNNNGC 3 cut(s) 173, 1101, 1345
NlaIII CATG 1 cut(s) 253
NlaIV GGNNCC 5 cut(s) 115, 193, 655, 858, 1248
NmeAIII GCCGAG 1 cut(s) 1075
PciSI GCTCTTC 1 cut(s) 888
PfeI GAWTC 6 cut(s) 208, 488, 835, 1019, 1084, 1191
PflMI CCANNNNNTGG 1 cut(s) 1436
PkrI GCNGC 1 cut(s) 1570
PleI GAGTC 6 cut(s) 246, 373, 510, 633, 808, 1258
PpsI GAGTC 6 cut(s) 246, 373, 510, 633, 808, 1258
PpuMI RGGWCCY 1 cut(s) 857
PshAI GACNNNNGTC 1 cut(s) 383
Psp124BI GAGCTC 3 cut(s) 521, 900, 1062
Psp5II RGGWCCY 1 cut(s) 857
Psp6I CCWGG 2 cut(s) 333, 957
PspGI CCWGG 2 cut(s) 333, 957
PspN4I GGNNCC 5 cut(s) 115, 193, 655, 858, 1248
PspPI GGNCC 2 cut(s) 653, 857
PspPPI RGGWCCY 1 cut(s) 857
PstI CTGCAG 1 cut(s) 153
PsuI RGATCY 4 cut(s) 191, 458, 941, 1246
RsaI GTAC 7 cut(s) 100, 738, 811, 1074, 1374, 1406, 1585
RsaNI GTAC 7 cut(s) 99, 737, 810, 1073, 1373, 1405, 1584
SacI GAGCTC 3 cut(s) 521, 900, 1062
SapI GCTCTTC 1 cut(s) 888
SaqAI TTAA 2 cut(s) 1002, 1224
SatI GCNGC 1 cut(s) 1569
Sau96I GGNCC 2 cut(s) 653, 857
ScaI AGTACT 1 cut(s) 811
SchI GAGTC 6 cut(s) 247, 373, 511, 634, 809, 1258
ScrFI CCNGG 2 cut(s) 335, 959
SduI GDGCHC 3 cut(s) 521, 900, 1062
SfaNI GCATC 1 cut(s) 371
SfcI CTRYAG 2 cut(s) 149, 322
SinI GGWCC 2 cut(s) 653, 857
SmlI CTYRAG 3 cut(s) 36, 899, 1218
SmoI CTYRAG 3 cut(s) 36, 899, 1218
SsiI CCGC 1 cut(s) 1581
SspI AATATT 3 cut(s) 121, 1131, 1256
SspMI CTAG 5 cut(s) 212, 383, 629, 852, 1332
SstI GAGCTC 3 cut(s) 521, 900, 1062
StyD4I CCNGG 2 cut(s) 333, 957
TaaI ACNGT 6 cut(s) 70, 89, 266, 353, 1272, 1628
TaiI ACGT 2 cut(s) 640, 1293
TaqI TCGA 3 cut(s) 290, 818, 1394
TatI WGTACW 4 cut(s) 736, 809, 1072, 1404
TfiI GAWTC 6 cut(s) 208, 488, 835, 1019, 1084, 1191
Tru1I TTAA 2 cut(s) 1002, 1224
Tru9I TTAA 2 cut(s) 1002, 1224
TscAI CASTG 5 cut(s) 75, 504, 853, 1201, 1239
TseI GCWGC 1 cut(s) 1568
TspDTI ATGAA 2 cut(s) 735, 1423
TspGWI ACGGA 1 cut(s) 391
TspRI CASTG 5 cut(s) 75, 504, 853, 1201, 1239
Van91I CCANNNNNTGG 1 cut(s) 1436
VpaK11BI GGWCC 2 cut(s) 653, 857
XapI RAATTY 4 cut(s) 58, 549, 643, 972
XbaI TCTAGA 1 cut(s) 628
XspI CTAG 5 cut(s) 212, 383, 629, 852, 1332
ZraI GACGTC 1 cut(s) 638
ZrmI AGTACT 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.