Rorug05G0199000

Leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000487
Physical Location & Seq
Forward (+)
19688050 .. 19688802
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0199000.1

Sequence Viewer

Length: 504 bp
ATGGCTTCTTCACTACCTGAAAGCTGGCCATGCATCACCATGGATGTGAACGAGTCTAACCTGAGCAATGACCTAATCATGTCCTTGTGGGAAGAAACACAAGCCGATCAAGAGCACGACGAGGAGCGGCTGAGCAGCCTAATCCGAGCTCTAGAAGTGGAGCTAGATCCTACTACTACAACTGACGGACATCATGAAATGTTCATGGACACTAATAATCCTCAGTTCGGCAGCAGCAACAGCGCTGACAATTTTCATCCGTTGGATGTGGGATATGCGAACGGAGGTGACTGCTCGGCATCTGGATTCGGTTGGGTTGATATGGAAATGGGGTCTTCTTCACAGGGCGATGAACCCATTGATAACTGGTACCTGAATTCTTGTGATTTTGATGAGATCGACTGCATGTCGTCGAATTTTGGAGGGCCTCAGACTGATCCCTTTGAGGAACATGGGCATCAAAATGTGTGGAAGGAAACTTGTAATACAAGGATGCTTGTATAA

Protein Analysis

167

Amino Acids

18.65

Weight (kDa)

4.05

Isoelectric Point (pI)

39.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000487)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49760 AT5G49770
fragaria_vesca FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23870 FvH4_3g23881 FvH4_3g23881 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_3g23890 FvH4_5g27161 FvH4_5g27170
malus_domestica MD11G1206300.v1.1
prunus_persica Prupe.4G230700_v2.0.a1 Prupe.4G230700_v2.0.a1 Prupe.4G231100_v2.0.a1 Prupe.4G231100_v2.0.a1 Prupe.4G231100_v2.0.a1 Prupe.4G231100_v2.0.a1
pyrus_communis pycom11g17930
rosa_chinensis RchiOBHm_Chr5g0042211 RchiOBHm_Chr5g0042261 RchiOBHm_Chr5g0042271 RchiOBHm_Chr5g0042311 RchiOBHm_Chr5g0042381 RchiOBHm_Chr7g0218261
rosa_laevigata RLG00000002384 RLG00000002385 RLG00000034112 RLG00000034114 RLG00000034116 RLG00000034118
rosa_multiflora Rmu_sc0001715.1_g000008 Rmu_sc0001715.1_g000012 Rmu_sc0001715.1_g000026 Rmu_sc0004956.1_g000008
rosa_roxburghii Rroxscaffold_1G00038360 Rroxscaffold_1G00038390 Rroxscaffold_1G00038400 Rroxscaffold_1G00038450 Rroxscaffold_3G00241180
rosa_rugosa Rorug05G0198800 Rorug05G0199000 Rorug05G0199100.1 Rorug05G0199200 Rorug05G0199300 Rorug07G0175900
rosa_samantha Rh5AG283400 Rh5AG283900 Rh5AG284100 Rh5AG284300 Rh5AG284900 Rh5AG285300 Rh5AG285700 Rh5BG289300 Rh5BG289900 Rh5BG290200 Rh5BG290400 Rh5CG320700 Rh5CG321200 Rh5CG321500 Rh5CG322100 Rh5CG322400 Rh5DG298600 Rh5DG299100 Rh5DG299400 Rh5DG300200 Rh7AG317500 Rh7BG308900 Rh7CG334400 Rh7DG316500
rosa_wichuraiana Rw0G001480 Rw0G001500 Rw0G001750 Rw0G001780 Rw0G015430 Rw5G026520 Rw7G026960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 369
AccB1I GGYRCC 1 cut(s) 369
AccBSI CCGCTC 1 cut(s) 127
AciI CCGC 1 cut(s) 127
AclWI GGATC 2 cut(s) 161, 431
AcoI YGGCCR 1 cut(s) 26
AcsI RAATTY 2 cut(s) 376, 415
AfaI GTAC 1 cut(s) 371
AfeI AGCGCT 1 cut(s) 244
AfiI CCNNNNNNNGG 1 cut(s) 227
AhdI GACNNNNNGTC 1 cut(s) 406
AluBI AGCT 3 cut(s) 24, 149, 163
AluI AGCT 3 cut(s) 24, 149, 163
Alw21I GWGCWC 2 cut(s) 117, 151
AlwI GGATC 2 cut(s) 161, 431
Aor51HI AGCGCT 1 cut(s) 244
AoxI GGCC 2 cut(s) 26, 425
ApeKI GCWGC 3 cut(s) 135, 231, 234
ApoI RAATTY 2 cut(s) 376, 415
Asp718I GGTACC 1 cut(s) 369
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 425
AsuHPI GGTGA 2 cut(s) 28, 299
BalI TGGCCA 1 cut(s) 28
BanI GGYRCC 1 cut(s) 369
BanII GRGCYC 1 cut(s) 151
BbsI GAAGAC 1 cut(s) 327
Bbv12I GWGCWC 2 cut(s) 117, 151
BbvI GCAGC 3 cut(s) 147, 243, 246
BfaI CTAG 2 cut(s) 152, 164
BfoI RGCGCY 1 cut(s) 246
BisI GCNGC 4 cut(s) 128, 136, 232, 235
BlpI GCTNAGC 1 cut(s) 131
BlsI GCNGC 4 cut(s) 129, 137, 233, 236
BmeRI GACNNNNNGTC 1 cut(s) 406
BmgT120I GGNCC 1 cut(s) 425
BmiI GGNNCC 1 cut(s) 371
BmsI GCATC 4 cut(s) 42, 308, 466, 483
BpiI GAAGAC 1 cut(s) 327
Bpu10I CCTNAGC 1 cut(s) 62
Bpu1102I GCTNAGC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 371
Bse3DI GCAATG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 4 cut(s) 49, 256, 271, 498
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 4 cut(s) 53, 122, 236, 443
BseNI ACTGG 1 cut(s) 371
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 3 cut(s) 147, 243, 246
BshFI GGCC 2 cut(s) 28, 427
BshNI GGYRCC 1 cut(s) 369
BsiHKAI GWGCWC 2 cut(s) 117, 151
BslI CCNNNNNNNGG 1 cut(s) 227
BsnI GGCC 2 cut(s) 28, 427
Bsp1286I GDGCHC 2 cut(s) 117, 151
Bsp143I GATC 4 cut(s) 106, 166, 396, 436
Bsp1720I GCTNAGC 1 cut(s) 131
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 1 cut(s) 127
BspANI GGCC 2 cut(s) 28, 427
BspCNI CTCAG 4 cut(s) 54, 123, 235, 442
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 371
BspPI GGATC 2 cut(s) 161, 431
BspT107I GGYRCC 1 cut(s) 369
BsrBI CCGCTC 1 cut(s) 127
BsrDI GCAATG 1 cut(s) 73
BsrI ACTGG 1 cut(s) 371
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 4 cut(s) 106, 166, 396, 436
BssT1I CCWWGG 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 4 cut(s) 62, 131, 222, 429
BstDSI CCRYGG 1 cut(s) 39
BstF5I GGATG 4 cut(s) 49, 256, 271, 498
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 4 cut(s) 109, 169, 399, 439
BstMBI GATC 4 cut(s) 106, 166, 396, 436
BstMWI GCNNNNNNNGC 2 cut(s) 30, 240
BstNSI RCATGY 1 cut(s) 409
BstV1I GCAGC 3 cut(s) 147, 243, 246
BstV2I GAAGAC 1 cut(s) 327
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BsuRI GGCC 2 cut(s) 28, 427
BtgI CCRYGG 1 cut(s) 39
BtgZI GCGATG 1 cut(s) 363
BtsCI GGATG 4 cut(s) 49, 256, 271, 498
Cac8I GCNNGC 1 cut(s) 26
CciI TCATGA 1 cut(s) 193
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 425
Csp6I GTAC 1 cut(s) 370
CspCI CAANNNNNGTGG 2 cut(s) 449, 484
CviAII CATG 7 cut(s) 30, 40, 79, 194, 205, 406, 452
CviJI RGCY 9 cut(s) 5, 24, 28, 104, 130, 138, 149, 163, 427
CviKI_1 RGCY 9 cut(s) 5, 24, 28, 104, 130, 138, 149, 163, 427
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 4 cut(s) 62, 131, 222, 429
DpnI GATC 4 cut(s) 108, 168, 398, 438
DpnII GATC 4 cut(s) 106, 166, 396, 436
DriI GACNNNNNGTC 1 cut(s) 406
EaeI YGGCCR 1 cut(s) 26
Eam1105I GACNNNNNGTC 1 cut(s) 406
Ecl136II GAGCTC 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 151
Eco47III AGCGCT 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 149
EcoO109I RGGNCCY 1 cut(s) 425
EcoRI GAATTC 1 cut(s) 376
EcoT14I CCWWGG 1 cut(s) 39
EcoT22I ATGCAT 1 cut(s) 35
EcoT38I GRGCYC 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 7 cut(s) 33, 43, 82, 197, 208, 409, 455
FatI CATG 7 cut(s) 29, 39, 78, 193, 204, 405, 451
Fnu4HI GCNGC 4 cut(s) 128, 136, 232, 235
FokI GGATG 3 cut(s) 56, 243, 278
FriOI GRGCYC 1 cut(s) 151
Fsp4HI GCNGC 4 cut(s) 128, 136, 232, 235
FspBI CTAG 2 cut(s) 152, 164
GlaI GCGC 1 cut(s) 244
GluI GCNGC 4 cut(s) 128, 136, 232, 235
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 2 cut(s) 28, 427
HhaI GCGC 1 cut(s) 245
Hin1II CATG 7 cut(s) 33, 43, 82, 197, 208, 409, 455
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HinfI GANTC 2 cut(s) 53, 306
HphI GGTGA 2 cut(s) 28, 299
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 2 cut(s) 146, 432
Hpy188III TCNNGA 4 cut(s) 110, 152, 194, 303
Hpy8I GTNNAC 1 cut(s) 49
Hpy99I CGWCG 2 cut(s) 122, 415
HpyAV CCTTC 1 cut(s) 466
HpyCH4V TGCA 2 cut(s) 33, 405
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 240
HpyF3I CTNAG 4 cut(s) 62, 131, 222, 429
Hsp92II CATG 7 cut(s) 33, 43, 82, 197, 208, 409, 455
HspAI GCGC 1 cut(s) 243
KpnI GGTACC 1 cut(s) 373
Kzo9I GATC 4 cut(s) 106, 166, 396, 436
LmnI GCTCC 2 cut(s) 124, 160
LpnPI CCDG 7 cut(s) 10, 30, 74, 288, 329, 352, 386
Lsp1109I GCAGC 3 cut(s) 147, 243, 246
LweI GCATC 4 cut(s) 42, 308, 466, 483
MaeI CTAG 2 cut(s) 152, 164
MaeIII GTNAC 1 cut(s) 287
MalI GATC 4 cut(s) 108, 168, 398, 438
MbiI CCGCTC 1 cut(s) 127
MboI GATC 4 cut(s) 106, 166, 396, 436
MboII GAAGA 3 cut(s) 104, 327, 330
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 2 cut(s) 117, 151
MlsI TGGCCA 1 cut(s) 28
MluCI AATT 3 cut(s) 250, 376, 415
MluNI TGGCCA 1 cut(s) 28
MlyI GAGTC 1 cut(s) 62
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 6 cut(s) 115, 231, 278, 416, 438, 439
Mox20I TGGCCA 1 cut(s) 28
Mph1103I ATGCAT 1 cut(s) 35
MscI TGGCCA 1 cut(s) 28
MslI CAYNNNNRTG 3 cut(s) 38, 44, 462
Msp20I TGGCCA 1 cut(s) 28
MwoI GCNNNNNNNGC 2 cut(s) 30, 240
NcoI CCATGG 1 cut(s) 39
NdeII GATC 4 cut(s) 106, 166, 396, 436
NlaIII CATG 7 cut(s) 33, 43, 82, 197, 208, 409, 455
NlaIV GGNNCC 1 cut(s) 371
NmeAIII GCCGAG 1 cut(s) 275
NmuCI GTSAC 1 cut(s) 287
NsiI ATGCAT 1 cut(s) 35
NspI RCATGY 1 cut(s) 409
PagI TCATGA 1 cut(s) 193
PfeI GAWTC 1 cut(s) 306
PkrI GCNGC 4 cut(s) 129, 137, 233, 236
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
Psp124BI GAGCTC 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 371
PspPI GGNCC 1 cut(s) 425
PsuI RGATCY 1 cut(s) 166
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
RseI CAYNNNNRTG 3 cut(s) 38, 44, 462
SacI GAGCTC 1 cut(s) 151
SatI GCNGC 4 cut(s) 128, 136, 232, 235
Sau3AI GATC 4 cut(s) 106, 166, 396, 436
Sau96I GGNCC 1 cut(s) 425
SchI GAGTC 1 cut(s) 62
SduI GDGCHC 2 cut(s) 117, 151
SetI ASST 8 cut(s) 19, 26, 63, 75, 151, 165, 289, 375
SfaNI GCATC 4 cut(s) 42, 308, 466, 483
SmiMI CAYNNNNRTG 3 cut(s) 38, 44, 462
Sse9I AATT 3 cut(s) 250, 376, 415
SsiI CCGC 1 cut(s) 127
SspMI CTAG 2 cut(s) 152, 164
SstI GAGCTC 1 cut(s) 151
StyI CCWWGG 1 cut(s) 39
TaqI TCGA 2 cut(s) 399, 413
TasI AATT 3 cut(s) 250, 376, 415
TauI GCSGC 1 cut(s) 130
TfiI GAWTC 1 cut(s) 306
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 3 cut(s) 135, 231, 234
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 4 cut(s) 193, 210, 245, 366
TspGWI ACGGA 3 cut(s) 201, 249, 297
XapI RAATTY 2 cut(s) 376, 415
XbaI TCTAGA 1 cut(s) 151
XceI RCATGY 1 cut(s) 409
XspI CTAG 2 cut(s) 152, 164
Zsp2I ATGCAT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.