AT1G09640

elongation factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
3119739 .. 3122542
2804 bp
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UTR
Exon/CDS
Intron
AT1G09640.1

Sequence Viewer

Length: 1245 bp
ATGGCTTTGGTCTTGCACACGTACAAGGGAAACAAAAGTGCTGAGAAGGCACTCATTGCAGCAGAGTACGTTGGTGTGCAGATCGATGTGCCCTCTGACTTTCAGATGGGTGTCACTAACAAAACCCCTGCGTTCCTCAAGATGAACCCTATTGGAAAGGTTCCTGTACTTGAGACTCCCGAGGGTTCAGTATTTGAAAGCAACGCAATTGCCCGTTATGTAAGCCGATTGAATGGTGACAACTCTTTGAACGGATCCTCCCTGATCGAATATGCACAAATTGAGCAATGGATTGATTTCTCTTCATTGGAGATCTATGCAAGTATCTTGAGGTGGTTCGGCCCAAGAATGGGCTTTATGCCATACAGTGCTCCGGCTGAAGAAGGTGCGATCTCTACGTTGAAGAGAGCACTTGATGCTCTGAACACACATCTCACGTCTAACACTTACCTTGTCGGACACTCTATTACCCTTGCTGATATCATCACTGTCTGCAACTTGAACTTGGGATTTGCTACTGTCATGACCAAGAAATTTACCTCTGAATTTCCTCATGTTGAGAGGTACTTCTGGACTGTGGTTAACCAACCAAACTTCACTAAAGTGTTGGGTGATGTCAAACAGACTGAAGCTGTCCCTCCTATTGCTTCCAAGAAAGCTGCCCAGCCTGCAAAGCCCAAAGAAGAGCCTAAGAAAAAGGAAGCCCCAGTAGCAGAGGCACCTAAGCTTGCTGAAGAGGAAGAGGCACCAAAGCCCAAAGCCAAGAACCCTCTTGACTTGCTACCACCAAGCCCTATGGTTCTAGATGATTGGAAGAGGCTTTACTCAAACACCAAATCTAACTTCCGCGAGGTTGCTATTAAAGGATTCTGGGACATGTATGACCCAGAGGGATACTCACTATGGTTCTGTGACTACAAGTACAACGATGAGAACATGGTGTCATTTGTCACGCTCAACAAGGTTGGTGGGTTCCTTCAGCGTATGGACTTGGCACGTAAATACTCCTTTGGAAAGATGCTGATTTGTGGGTCAGAGGGTCCGTTCAAGGTGAAGGGTTTATGGCTGTTCCGTGGACCAGAGATCCCAAAGTTCATAATGGACGAGGTGTACGACATGGAGCTGTATGAGTGGACTAAGGTTGATATCTCAGATGAAGCCCAGAAGGAGCGTGTTAGCCAGATGATTGAAGACGCAGAGCCATTTGAAGGTGAGGCTCTCTTGGACGCCAAGTGCTTCAAGTGA

Protein Analysis

414

Amino Acids

46.66

Weight (kDa)

5.36

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 6 - 76 1.7e-12 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 7 - 79 9.3e-07 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 14 - 76 5.9e-07 Glutathione S-transferase, N-terminal domain
GST_C PF00043 123 - 197 9.4e-12 Glutathione S-transferase, C-terminal domain
GST_C_3 PF14497 132 - 200 9e-06 Glutathione S-transferase, C-terminal domain
EF1G PF00647 253 - 360 6.4e-40 Elongation factor 1 gamma, conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 718, 745
AccII CGCG 1 cut(s) 849
AciI CCGC 1 cut(s) 847
AclWI GGATC 3 cut(s) 249, 262, 1078
AcsI RAATTY 2 cut(s) 533, 545
AcuI CTGAAG 4 cut(s) 399, 648, 753, 962
AcyI GRCGYC 1 cut(s) 1227
AfaI GTAC 6 cut(s) 23, 68, 168, 566, 923, 1112
AfiI CCNNNNNNNGG 3 cut(s) 349, 350, 1208
AflIII ACRYGT 2 cut(s) 18, 876
AgsI TTSAA 9 cut(s) 197, 232, 250, 403, 502, 1048, 1190, 1208, 1240
AjiI CACGTC 1 cut(s) 438
AjuI GAANNNNNNNTTGG 2 cut(s) 827, 859
AleI CACNNNNGTG 1 cut(s) 602
AloI GAACNNNNNNTCC 2 cut(s) 242, 274
AluBI AGCT 4 cut(s) 632, 659, 727, 1123
AluI AGCT 4 cut(s) 632, 659, 727, 1123
Alw21I GWGCWC 2 cut(s) 373, 412
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 3 cut(s) 249, 262, 1078
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 1 cut(s) 340
ApeKI GCWGC 2 cut(s) 59, 659
ApoI RAATTY 2 cut(s) 533, 545
AspS9I GGNCC 3 cut(s) 341, 1040, 1076
AsuHPI GGTGA 4 cut(s) 248, 623, 1063, 1223
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 2 cut(s) 1040, 1076
BaeGI GKGCMC 1 cut(s) 93
BamHI GGATCC 1 cut(s) 254
BanI GGYRCC 2 cut(s) 718, 745
BarI GAAGNNNNNNTAC 2 cut(s) 806, 838
BbsI GAAGAC 1 cut(s) 1197
Bbv12I GWGCWC 2 cut(s) 373, 412
BbvI GCAGC 2 cut(s) 71, 646
BccI CCATC 1 cut(s) 100
BciVI GTATCC 1 cut(s) 887
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 1 cut(s) 803
BfuI GTATCC 1 cut(s) 887
BglII AGATCT 1 cut(s) 312
BisI GCNGC 2 cut(s) 60, 660
BlsI GCNGC 2 cut(s) 61, 661
Bme18I GGWCC 2 cut(s) 1040, 1076
BmeT110I CYCGRG 1 cut(s) 179
BmgBI CACGTC 1 cut(s) 438
BmgT120I GGNCC 3 cut(s) 341, 1040, 1076
BmiI GGNNCC 6 cut(s) 162, 256, 720, 747, 974, 1041
BmrI ACTGGG 1 cut(s) 701
BmsI GCATC 2 cut(s) 406, 1008
BmuI ACTGGG 1 cut(s) 701
BpiI GAAGAC 1 cut(s) 1197
BplI GAGNNNNNCTC 2 cut(s) 881, 913
Bpu10I CCTNAGC 1 cut(s) 723
BpuEI CTTGAG 3 cut(s) 122, 191, 349
Bsa29I ATCGAT 1 cut(s) 84
BsaAI YACGTR 2 cut(s) 21, 998
BsaHI GRCGYC 1 cut(s) 1227
BsaJI CCNNGG 2 cut(s) 180, 1072
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 3 cut(s) 349, 350, 1208
Bse1I ACTGG 1 cut(s) 707
Bse3DI GCAATG 2 cut(s) 54, 293
BseCI ATCGAT 1 cut(s) 84
BseDI CCNNGG 2 cut(s) 180, 1072
BseLI CCNNNNNNNGG 3 cut(s) 349, 350, 1208
BseMI GCAATG 2 cut(s) 54, 293
BseMII CTCAG 2 cut(s) 33, 1164
BseNI ACTGG 1 cut(s) 707
BseSI GKGCMC 1 cut(s) 93
BseXI GCAGC 2 cut(s) 71, 646
BseYI CCCAGC 1 cut(s) 663
BsgI GTGCAG 1 cut(s) 98
Bsh1236I CGCG 1 cut(s) 849
BshFI GGCC 1 cut(s) 342
BshNI GGYRCC 2 cut(s) 718, 745
BshVI ATCGAT 1 cut(s) 84
BsiHKAI GWGCWC 2 cut(s) 373, 412
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 1 cut(s) 374
BslFI GGGAC 2 cut(s) 620, 887
BslI CCNNNNNNNGG 3 cut(s) 349, 350, 1208
BsmAI GTCTC 1 cut(s) 167
BsmFI GGGAC 2 cut(s) 620, 887
BsnI GGCC 1 cut(s) 342
BsoBI CYCGRG 1 cut(s) 179
Bsp1286I GDGCHC 3 cut(s) 93, 373, 412
Bsp143I GATC 6 cut(s) 81, 254, 264, 312, 390, 1083
BspACI CCGC 1 cut(s) 847
BspANI GGCC 1 cut(s) 342
BspCNI CTCAG 2 cut(s) 34, 1163
BspDI ATCGAT 1 cut(s) 84
BspFNI CGCG 1 cut(s) 849
BspHI TCATGA 1 cut(s) 522
BspLI GGNNCC 6 cut(s) 162, 256, 720, 747, 974, 1041
BspPI GGATC 3 cut(s) 249, 262, 1078
BspQI GCTCTTC 1 cut(s) 678
BspT107I GGYRCC 2 cut(s) 718, 745
BsrDI GCAATG 2 cut(s) 54, 293
BsrI ACTGG 1 cut(s) 707
BssECI CCNNGG 2 cut(s) 180, 1072
BssMI GATC 6 cut(s) 81, 254, 264, 312, 390, 1083
BssNI GRCGYC 1 cut(s) 1227
Bst4CI ACNGT 4 cut(s) 368, 490, 520, 577
Bst6I CTCTTC 6 cut(s) 307, 398, 678, 729, 735, 809
BstACI GRCGYC 1 cut(s) 1227
BstAPI GCANNNNNTGC 2 cut(s) 56, 416
BstBAI YACGTR 2 cut(s) 21, 998
BstC8I GCNNGC 2 cut(s) 669, 729
BstDEI CTNAG 5 cut(s) 42, 690, 723, 1137, 1150
BstDSI CCRYGG 1 cut(s) 1072
BstFNI CGCG 1 cut(s) 849
BstKTI GATC 6 cut(s) 84, 257, 267, 315, 393, 1086
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 6 cut(s) 81, 254, 264, 312, 390, 1083
BstMWI GCNNNNNNNGC 6 cut(s) 47, 56, 416, 668, 673, 710
BstNSI RCATGY 1 cut(s) 880
BstSLI GKGCMC 1 cut(s) 93
BstUI CGCG 1 cut(s) 849
BstV1I GCAGC 2 cut(s) 71, 646
BstV2I GAAGAC 1 cut(s) 1197
BstX2I RGATCY 3 cut(s) 254, 312, 1083
BstYI RGATCY 3 cut(s) 254, 312, 1083
Bsu15I ATCGAT 1 cut(s) 84
BsuI GTATCC 1 cut(s) 887
BsuRI GGCC 1 cut(s) 342
BsuTUI ATCGAT 1 cut(s) 84
BtgI CCRYGG 1 cut(s) 1072
BtrI CACGTC 1 cut(s) 438
BtsIMutI CAGTG 2 cut(s) 373, 486
Cac8I GCNNGC 2 cut(s) 669, 729
CciI TCATGA 1 cut(s) 522
Cfr13I GGNCC 3 cut(s) 341, 1040, 1076
ClaI ATCGAT 1 cut(s) 84
CseI GACGC 2 cut(s) 1202, 1235
Csp6I GTAC 6 cut(s) 22, 67, 167, 565, 922, 1111
CspCI CAANNNNNGTGG 2 cut(s) 949, 984
CviAII CATG 5 cut(s) 523, 554, 877, 937, 1117
CviQI GTAC 6 cut(s) 22, 67, 167, 565, 922, 1111
DdeI CTNAG 5 cut(s) 42, 690, 723, 1137, 1150
DpnI GATC 6 cut(s) 83, 256, 266, 314, 392, 1085
DpnII GATC 6 cut(s) 81, 254, 264, 312, 390, 1083
Eam1104I CTCTTC 6 cut(s) 307, 398, 678, 729, 735, 809
EarI CTCTTC 6 cut(s) 307, 398, 678, 729, 735, 809
Eco32I GATATC 2 cut(s) 481, 1147
Eco47I GGWCC 2 cut(s) 1040, 1076
Eco57I CTGAAG 4 cut(s) 399, 648, 753, 962
Eco88I CYCGRG 1 cut(s) 179
EcoRV GATATC 2 cut(s) 481, 1147
FaeI CATG 5 cut(s) 526, 557, 880, 940, 1120
FaqI GGGAC 2 cut(s) 620, 887
FatI CATG 5 cut(s) 522, 553, 876, 936, 1116
Fnu4HI GCNGC 2 cut(s) 60, 660
Fsp4HI GCNGC 2 cut(s) 60, 660
FspBI CTAG 1 cut(s) 803
GluI GCNGC 2 cut(s) 60, 660
GsaI CCCAGC 1 cut(s) 667
HaeIII GGCC 1 cut(s) 342
HapII CCGG 1 cut(s) 374
HgaI GACGC 2 cut(s) 1202, 1235
Hin1I GRCGYC 1 cut(s) 1227
Hin1II CATG 5 cut(s) 526, 557, 880, 940, 1120
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HindIII AAGCTT 1 cut(s) 725
HinfI GANTC 2 cut(s) 175, 867
HpaI GTTAAC 1 cut(s) 583
HpaII CCGG 1 cut(s) 374
HphI GGTGA 4 cut(s) 248, 623, 1063, 1223
Hpy166II GTNNAC 4 cut(s) 583, 1076, 1111, 1134
Hpy188I TCNGA 7 cut(s) 97, 105, 423, 458, 544, 1036, 1153
Hpy188III TCNNGA 7 cut(s) 139, 179, 328, 523, 571, 773, 803
Hpy8I GTNNAC 4 cut(s) 583, 1076, 1111, 1134
HpyAV CCTTC 6 cut(s) 40, 377, 986, 1048, 1159, 1202
HpyCH4III ACNGT 4 cut(s) 368, 490, 520, 577
HpyCH4IV ACGT 5 cut(s) 20, 69, 398, 437, 997
HpyCH4V TGCA 7 cut(s) 16, 59, 79, 275, 320, 495, 671
HpyF10VI GCNNNNNNNGC 6 cut(s) 47, 56, 416, 668, 673, 710
HpyF3I CTNAG 5 cut(s) 42, 690, 723, 1137, 1150
HpySE526I ACGT 5 cut(s) 20, 69, 398, 437, 997
Hsp92I GRCGYC 1 cut(s) 1227
Hsp92II CATG 5 cut(s) 526, 557, 880, 940, 1120
KspAI GTTAAC 1 cut(s) 583
Kzo9I GATC 6 cut(s) 81, 254, 264, 312, 390, 1083
LguI GCTCTTC 1 cut(s) 678
LmnI GCTCC 3 cut(s) 376, 1120, 1168
Lsp1109I GCAGC 2 cut(s) 71, 646
LweI GCATC 2 cut(s) 406, 1008
MaeI CTAG 1 cut(s) 803
MaeII ACGT 5 cut(s) 20, 69, 398, 437, 997
MaeIII GTNAC 4 cut(s) 112, 236, 911, 949
MalI GATC 6 cut(s) 83, 256, 266, 314, 392, 1085
MboI GATC 6 cut(s) 81, 254, 264, 312, 390, 1083
MboII GAAGA 8 cut(s) 294, 392, 415, 695, 746, 752, 826, 1202
MfeI CAATTG 1 cut(s) 207
MflI RGATCY 3 cut(s) 254, 312, 1083
MhlI GDGCHC 3 cut(s) 93, 373, 412
MluCI AATT 4 cut(s) 207, 279, 533, 545
MlyI GAGTC 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 436
MseI TTAA 2 cut(s) 582, 861
MslI CAYNNNNRTG 1 cut(s) 602
MspI CCGG 1 cut(s) 374
MunI CAATTG 1 cut(s) 207
MvnI CGCG 1 cut(s) 849
MwoI GCNNNNNNNGC 6 cut(s) 47, 56, 416, 668, 673, 710
NdeII GATC 6 cut(s) 81, 254, 264, 312, 390, 1083
NlaIII CATG 5 cut(s) 526, 557, 880, 940, 1120
NlaIV GGNNCC 6 cut(s) 162, 256, 720, 747, 974, 1041
NmuCI GTSAC 4 cut(s) 112, 236, 911, 949
NspI RCATGY 1 cut(s) 880
OliI CACNNNNGTG 1 cut(s) 602
PagI TCATGA 1 cut(s) 522
PciI ACATGT 1 cut(s) 876
PciSI GCTCTTC 1 cut(s) 678
PcsI WCGNNNNNNNCGW 1 cut(s) 1110
PfeI GAWTC 1 cut(s) 867
PkrI GCNGC 2 cut(s) 61, 661
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
Ppu21I YACGTR 2 cut(s) 21, 998
PscI ACATGT 1 cut(s) 876
PspFI CCCAGC 1 cut(s) 663
PspN4I GGNNCC 6 cut(s) 162, 256, 720, 747, 974, 1041
PspPI GGNCC 3 cut(s) 341, 1040, 1076
PsuI RGATCY 3 cut(s) 254, 312, 1083
RsaI GTAC 6 cut(s) 23, 68, 168, 566, 923, 1112
RsaNI GTAC 6 cut(s) 22, 67, 167, 565, 922, 1111
RseI CAYNNNNRTG 1 cut(s) 602
SapI GCTCTTC 1 cut(s) 678
SaqAI TTAA 2 cut(s) 582, 861
SatI GCNGC 2 cut(s) 60, 660
Sau3AI GATC 6 cut(s) 81, 254, 264, 312, 390, 1083
Sau96I GGNCC 3 cut(s) 341, 1040, 1076
SchI GAGTC 1 cut(s) 169
SduI GDGCHC 3 cut(s) 93, 373, 412
SfaNI GCATC 2 cut(s) 406, 1008
SinI GGWCC 2 cut(s) 1040, 1076
SmiMI CAYNNNNRTG 1 cut(s) 602
SmlI CTYRAG 3 cut(s) 137, 170, 328
SmoI CTYRAG 3 cut(s) 137, 170, 328
Sse9I AATT 4 cut(s) 207, 279, 533, 545
SsiI CCGC 1 cut(s) 847
SspMI CTAG 1 cut(s) 803
TaaI ACNGT 4 cut(s) 368, 490, 520, 577
TaiI ACGT 5 cut(s) 23, 72, 401, 440, 1000
TaqI TCGA 2 cut(s) 84, 267
TasI AATT 4 cut(s) 207, 279, 533, 545
TatI WGTACW 2 cut(s) 166, 921
TfiI GAWTC 1 cut(s) 867
Tru1I TTAA 2 cut(s) 582, 861
Tru9I TTAA 2 cut(s) 582, 861
TscAI CASTG 2 cut(s) 373, 493
TseFI GTSAC 4 cut(s) 112, 236, 911, 949
TseI GCWGC 2 cut(s) 59, 659
Tsp45I GTSAC 4 cut(s) 112, 236, 911, 949
TspDTI ATGAA 4 cut(s) 158, 294, 1084, 1170
TspGWI ACGGA 3 cut(s) 267, 1032, 1061
TspRI CASTG 2 cut(s) 373, 493
VpaK11BI GGWCC 2 cut(s) 1040, 1076
XapI RAATTY 2 cut(s) 533, 545
XbaI TCTAGA 1 cut(s) 802
XceI RCATGY 1 cut(s) 880
XspI CTAG 1 cut(s) 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.