Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001918.1

Orthogroup ID

OG0000992

Physical Location & Seq

Genomic Coordinates Forward (+)

60397 .. 64293

Gene Structure 3897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001918.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atgttggagaacagatcgatctttgaagatgttggagcacatatcgatcttggaagatatgttgacggcggcccagagagagagagagagagaggcggtgacagagcgatcttggagcgcagagcgatctctcgagagttggtacgctttgaagaggctgaggaagctgcaatttcttccttgaagagagcactaactgctttgaacactcatcttgcttccaacacatacttggttgggcactctgtgacattggctgatatcattatgatatgtaatttaacactgggttttaaccggttgttgacaaaaagttttacctcagaatttcctcatgttgagagatacttttggacattggttaatcagcctaattttcgcaagatactgggtgaggtgaaacaagctgaatctgttccagctgttcagtcaaagaagccttcacagcctaaggaacctgcaaagaaagaggccaagaaggaagtgaagaaagagccagcaaagcctaaagtagaagaggctgctcaggaagaggaggcacccaagcccaaggcaaagaatcctcttgatcttttgcctcctagcaagatgattctggatgaatggaaaaggctttattcaaacacaaagaccaacttccgtgaggttgctgtcaaaggcttctgggacatgtatgatccagagggttactccctttggttttgcgattacaaatacaacgatgaaaatacagtttcatttgtgactttgaacaaggtgggcggttttctgcagcggatggatttggctcgtaaatatgcgtttgggaagatgttggtgattgggtctgatcctcctttcaaggtgaagggcttgtggctgttccgtgggcaagaggttccccagttcataattgatgaatgttatgacatggaactgtatgattggtgtaaggttgatataactgatgaggatcaaaaggagcgcgtgaaccagatgattgaagatcacgagccttttgagggggaggctttgttggatgccaaatgcttcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

345

Amino Acids

39.8

Weight (kDa)

5.66

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09640 AT1G57720 AT1G57720
fragaria_vesca	FvH4_5g28250 FvH4_5g28250 FvH4_5g32590 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560
malus_domestica	MD08G1244100.v1.1 MD15G1403200.v1.1 MD15G1438400.v1.1
prunus_persica	Prupe.1G549300_v2.0.a1 Prupe.1G549300_v2.0.a1 Prupe.1G581500_v2.0.a1 Prupe.1G581500_v2.0.a1
pyrus_communis	pycom08g21180 pycom15g36060 pycom15g38640
rosa_chinensis	RchiOBHm_Chr7g0220411 RchiOBHm_Chr7g0229581 RchiOBHm_Chr7g0229711 RchiOBHm_Chr7g0230101 RchiOBHm_Chr7g0230191
rosa_laevigata	RLG00000001508 RLG00000001510
rosa_multiflora	Rmu_sc0000693.1_g000058 Rmu_sc0000851.1_g000010 Rmu_sc0001621.1_g000005 Rmu_sc0001918.1_g000014 Rmu_sc0002666.1_g000007 Rmu_sc0002822.1_g000020 Rmu_sc0002822.1_g000031 Rmu_sc0004110.1_g000004 Rmu_ssc0000189.1_g000051
rosa_roxburghii	Rroxscaffold_3G00230290 Rroxscaffold_3G00230310 Rroxscaffold_3G00239390
rosa_rugosa	Rorug07G0193900 Rorug07G0259200 Rorug07G0259700 Rorug07G0259900 Rorug07G0260000
rosa_samantha	Rh7AG334900 Rh7AG408700 Rh7AG409300 Rh7AG409800 Rh7BG325900 Rh7BG387800 Rh7BG388100 Rh7BG388200 Rh7BG388600 Rh7CG352600 Rh7CG427700
rosa_wichuraiana	Rw0G018580 Rw0G022570 Rw7G028550 Rw7G033930 Rw7G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	466
AccB1I	GGYRCC	1 cut(s)	538
AccII	CGCG	1 cut(s)	966
AciI	CCGC	4 cut(s)	69, 96, 762, 775
AclWI	GGATC	3 cut(s)	671, 824, 960
AcsI	RAATTY	1 cut(s)	326
AdeI	CACNNNGTG	1 cut(s)	247
AfaI	GTAC	1 cut(s)	144
AfiI	CCNNNNNNNGG	1 cut(s)	1001
AflIII	ACRYGT	1 cut(s)	669
AgeI	ACCGGT	1 cut(s)	297
AgsI	TTSAA	9 cut(s)	26, 152, 184, 205, 621, 751, 841, 983, 1033
AluBI	AGCT	3 cut(s)	167, 407, 422
AluI	AGCT	3 cut(s)	167, 407, 422
Alw21I	GWGCWC	2 cut(s)	40, 193
AlwI	GGATC	3 cut(s)	671, 824, 960
Ama87I	CYCGRG	1 cut(s)	132
AoxI	GGCC	2 cut(s)	70, 471
ApeKI	GCWGC	3 cut(s)	167, 521, 772
ApoI	RAATTY	1 cut(s)	326
AsiGI	ACCGGT	1 cut(s)	297
Asp700I	GAANNNNTTC	1 cut(s)	414
AspLEI	GCGC	2 cut(s)	120, 966
AspS9I	GGNCC	1 cut(s)	71
AsuHPI	GGTGA	5 cut(s)	110, 404, 409, 829, 856
AvaI	CYCGRG	1 cut(s)	132
AxyI	CCTNAGG	1 cut(s)	450
BaeGI	GKGCMC	1 cut(s)	243
BanI	GGYRCC	1 cut(s)	538
BauI	CACGAG	1 cut(s)	989
Bbv12I	GWGCWC	2 cut(s)	40, 193
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	3 cut(s)	154, 508, 784
BccI	CCATC	1 cut(s)	772
BceAI	ACGGC	1 cut(s)	82
BfaI	CTAG	1 cut(s)	582
BfmI	CTRYAG	1 cut(s)	770
BfuAI	ACCTGC	1 cut(s)	466
BisI	GCNGC	4 cut(s)	70, 168, 522, 773
BlsI	GCNGC	4 cut(s)	71, 169, 523, 774
BmeT110I	CYCGRG	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	3 cut(s)	456, 540, 879
BmrI	ACTGGG	3 cut(s)	296, 398, 877
BmsI	GCATC	1 cut(s)	1009
BmuI	ACTGGG	3 cut(s)	296, 398, 877
BplI	GAGNNNNNCTC	2 cut(s)	674, 706
Bpu10I	CCTNAGC	2 cut(s)	159, 525
Bsa29I	ATCGAT	2 cut(s)	17, 45
BsaBI	GATNNNNATC	1 cut(s)	951
BsaJI	CCNNGG	2 cut(s)	549, 865
BsaWI	WCCGGW	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	998, 1028
Bsc4I	CCNNNNNNNGG	1 cut(s)	1001
Bse118I	RCCGGY	1 cut(s)	297
Bse1I	ACTGG	3 cut(s)	291, 393, 883
Bse21I	CCTNAGG	1 cut(s)	450
Bse8I	GATNNNNATC	1 cut(s)	951
BseCI	ATCGAT	2 cut(s)	17, 45
BseDI	CCNNGG	2 cut(s)	549, 865
BseGI	GGATG	3 cut(s)	604, 783, 1024
BseJI	GATNNNNATC	1 cut(s)	951
BseLI	CCNNNNNNNGG	1 cut(s)	1001
BseMII	CTCAG	3 cut(s)	150, 336, 539
BseNI	ACTGG	3 cut(s)	291, 393, 883
BseRI	GAGGAG	1 cut(s)	548
BseSI	GKGCMC	1 cut(s)	243
BseXI	GCAGC	3 cut(s)	154, 508, 784
Bsh1236I	CGCG	1 cut(s)	966
BshFI	GGCC	2 cut(s)	72, 473
BshNI	GGYRCC	1 cut(s)	538
BshTI	ACCGGT	1 cut(s)	297
BshVI	ATCGAT	2 cut(s)	17, 45
BsiHKAI	GWGCWC	2 cut(s)	40, 193
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	298
BslFI	GGGAC	1 cut(s)	680
BslI	CCNNNNNNNGG	1 cut(s)	1001
BsmFI	GGGAC	1 cut(s)	680
BsnI	GGCC	2 cut(s)	72, 473
BsoBI	CYCGRG	1 cut(s)	132
Bsp1286I	GDGCHC	3 cut(s)	40, 193, 243
BspACI	CCGC	4 cut(s)	69, 96, 762, 775
BspANI	GGCC	2 cut(s)	72, 473
BspCNI	CTCAG	3 cut(s)	151, 335, 538
BspDI	ATCGAT	2 cut(s)	17, 45
BspFNI	CGCG	1 cut(s)	966
BspLI	GGNNCC	3 cut(s)	456, 540, 879
BspMAI	CTGCAG	1 cut(s)	774
BspMI	ACCTGC	1 cut(s)	466
BspPI	GGATC	3 cut(s)	671, 824, 960
BspT107I	GGYRCC	1 cut(s)	538
BsrFI	RCCGGY	1 cut(s)	297
BsrI	ACTGG	3 cut(s)	291, 393, 883
BssAI	RCCGGY	1 cut(s)	297
BssECI	CCNNGG	2 cut(s)	549, 865
BssSI	CACGAG	1 cut(s)	989
BssT1I	CCWWGG	1 cut(s)	549
Bst2BI	CACGAG	1 cut(s)	989
Bst4CI	ACNGT	2 cut(s)	733, 918
Bst6I	CTCTTC	4 cut(s)	147, 179, 510, 525
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	4 cut(s)	159, 322, 450, 525
BstDSI	CCRYGG	1 cut(s)	865
BstF5I	GGATG	3 cut(s)	604, 783, 1024
BstFNI	CGCG	1 cut(s)	966
BstHHI	GCGC	2 cut(s)	120, 966
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 197, 445, 502
BstNSI	RCATGY	1 cut(s)	673
BstSFI	CTRYAG	1 cut(s)	770
BstSLI	GKGCMC	1 cut(s)	243
BstUI	CGCG	1 cut(s)	966
BstV1I	GCAGC	3 cut(s)	154, 508, 784
Bsu15I	ATCGAT	2 cut(s)	17, 45
Bsu36I	CCTNAGG	1 cut(s)	450
BsuRI	GGCC	2 cut(s)	72, 473
BsuTUI	ATCGAT	2 cut(s)	17, 45
BtgI	CCRYGG	1 cut(s)	865
BtsCI	GGATG	3 cut(s)	604, 783, 1024
BtsIMutI	CAGTG	1 cut(s)	284
BveI	ACCTGC	1 cut(s)	466
Cac8I	GCNNGC	1 cut(s)	498
CfoI	GCGC	2 cut(s)	120, 966
Cfr10I	RCCGGY	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	71
ClaI	ATCGAT	2 cut(s)	17, 45
Csp6I	GTAC	1 cut(s)	143
CspAI	ACCGGT	1 cut(s)	297
CviAII	CATG	3 cut(s)	335, 670, 910
CviQI	GTAC	1 cut(s)	143
DdeI	CTNAG	4 cut(s)	159, 322, 450, 525
DraIII	CACNNNGTG	1 cut(s)	247
Eam1104I	CTCTTC	4 cut(s)	147, 179, 510, 525
EarI	CTCTTC	4 cut(s)	147, 179, 510, 525
Eco130I	CCWWGG	1 cut(s)	549
Eco32I	GATATC	1 cut(s)	262
Eco81I	CCTNAGG	1 cut(s)	450
Eco88I	CYCGRG	1 cut(s)	132
EcoRV	GATATC	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	549
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	3 cut(s)	338, 673, 913
FalI	AAGNNNNNCTT	2 cut(s)	620, 652
FaqI	GGGAC	1 cut(s)	680
FatI	CATG	3 cut(s)	334, 669, 909
Fnu4HI	GCNGC	4 cut(s)	70, 168, 522, 773
FokI	GGATG	3 cut(s)	611, 790, 1031
Fsp4HI	GCNGC	4 cut(s)	70, 168, 522, 773
FspBI	CTAG	1 cut(s)	582
GlaI	GCGC	2 cut(s)	119, 965
GluI	GCNGC	4 cut(s)	70, 168, 522, 773
HaeIII	GGCC	2 cut(s)	72, 473
HapII	CCGG	1 cut(s)	298
HhaI	GCGC	2 cut(s)	120, 966
Hin1II	CATG	3 cut(s)	338, 673, 913
Hin6I	GCGC	2 cut(s)	118, 964
HinP1I	GCGC	2 cut(s)	118, 964
HincII	GTYRAC	2 cut(s)	64, 306
HindII	GTYRAC	2 cut(s)	64, 306
HinfI	GANTC	3 cut(s)	410, 559, 592
HpaII	CCGG	1 cut(s)	298
HphI	GGTGA	5 cut(s)	110, 404, 409, 829, 856
Hpy166II	GTNNAC	3 cut(s)	64, 306, 970
Hpy188I	TCNGA	2 cut(s)	325, 829
Hpy188III	TCNNGA	7 cut(s)	132, 134, 527, 566, 596, 680, 989
Hpy8I	GTNNAC	3 cut(s)	64, 306, 970
HpyAV	CCTTC	3 cut(s)	450, 472, 841
HpyCH4III	ACNGT	2 cut(s)	733, 918
HpyCH4V	TGCA	3 cut(s)	170, 461, 772
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 197, 445, 502
HpyF3I	CTNAG	4 cut(s)	159, 322, 450, 525
Hsp92II	CATG	3 cut(s)	338, 673, 913
HspAI	GCGC	2 cut(s)	118, 964
LmnI	GCTCC	3 cut(s)	35, 115, 961
Lsp1109I	GCAGC	3 cut(s)	154, 508, 784
LweI	GCATC	1 cut(s)	1009
MaeI	CTAG	1 cut(s)	582
MaeIII	GTNAC	4 cut(s)	98, 247, 686, 742
MhlI	GDGCHC	3 cut(s)	40, 193, 243
MluCI	AATT	5 cut(s)	171, 277, 326, 373, 891
MmeI	TCCRAC	3 cut(s)	13, 246, 996
MroXI	GAANNNNTTC	1 cut(s)	414
MseI	TTAA	3 cut(s)	281, 294, 363
MspA1I	CMGCKG	2 cut(s)	422, 775
MspI	CCGG	1 cut(s)	298
MvnI	CGCG	1 cut(s)	966
MwoI	GCNNNNNNNGC	4 cut(s)	164, 197, 445, 502
NlaIII	CATG	3 cut(s)	338, 673, 913
NlaIV	GGNNCC	3 cut(s)	456, 540, 879
NmuCI	GTSAC	3 cut(s)	98, 247, 742
NspI	RCATGY	1 cut(s)	673
PaeR7I	CTCGAG	1 cut(s)	132
PciI	ACATGT	1 cut(s)	669
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	3 cut(s)	410, 559, 592
PinAI	ACCGGT	1 cut(s)	297
PkrI	GCNGC	4 cut(s)	71, 169, 523, 774
PscI	ACATGT	1 cut(s)	669
PspN4I	GGNNCC	3 cut(s)	456, 540, 879
PspPI	GGNCC	1 cut(s)	71
PstI	CTGCAG	1 cut(s)	774
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	1 cut(s)	144
RsaNI	GTAC	1 cut(s)	143
SaqAI	TTAA	3 cut(s)	281, 294, 363
SatI	GCNGC	4 cut(s)	70, 168, 522, 773
Sau96I	GGNCC	1 cut(s)	71
SduI	GDGCHC	3 cut(s)	40, 193, 243
SfaNI	GCATC	1 cut(s)	1009
SfcI	CTRYAG	1 cut(s)	770
Sfr274I	CTCGAG	1 cut(s)	132
SlaI	CTCGAG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
Sse9I	AATT	5 cut(s)	171, 277, 326, 373, 891
SsiI	CCGC	4 cut(s)	69, 96, 762, 775
SspMI	CTAG	1 cut(s)	582
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	2 cut(s)	733, 918
TaqI	TCGA	3 cut(s)	17, 45, 133
TasI	AATT	5 cut(s)	171, 277, 326, 373, 891
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	3 cut(s)	410, 559, 592
Tru1I	TTAA	3 cut(s)	281, 294, 363
Tru9I	TTAA	3 cut(s)	281, 294, 363
TscAI	CASTG	1 cut(s)	291
TseFI	GTSAC	3 cut(s)	98, 247, 742
TseI	GCWGC	3 cut(s)	167, 521, 772
Tsp45I	GTSAC	3 cut(s)	98, 247, 742
TspDTI	ATGAA	5 cut(s)	615, 726, 738, 877, 912
TspGWI	ACGGA	2 cut(s)	629, 854
TspRI	CASTG	1 cut(s)	291
XapI	RAATTY	1 cut(s)	326
XceI	RCATGY	1 cut(s)	673
XcmI	CCANNNNNNNNNTGG	1 cut(s)	229
XhoI	CTCGAG	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.