Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00833

Orthogroup ID

OG0000992

Physical Location & Seq

Genomic Coordinates Reverse (-)

23036 .. 26389

Gene Structure 3354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G018580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGCCTCTCTCACTCTCTCCTCTCTCTGAAAGGAGATTAGTGTTGCATGATTGGAAGACCAATAAAAATGGTTGCAAGGCACGTATTGCTGCCGAGTACAGTGGTGTGAACCTTGAATTGGTGAAAATTTTTGAGATGGGGATGTCCAATAAGACTGCCAATTTTCTCAAATTGACCCCTATTGGGAAGCTTCCTTTGTTAGAAACACCTGTTGGTCCTGTTTTTGAGAGCAATGCCATTGCACGCTATGTTACTAGCTTGAAAGCGGATAATCCTCTTTTTGCCCTTGTGGAGCAATGGATAGATTTTGCATCTTTGGAGATTGATGCCAATATGTTGCGATGGTTGAAACAGCGTATGGGTTATGCTGTTTACCTTCCTCTGGTTAGACATTCGGCAATTTCTTCCTTGAAGAGAGCACTAACTGCTTTGAACATTCATCTTGCTTCCAACATGTACCTGGTTGGGCATTCTATCACGTTGGCTGATATCATTATGACATGTAATTTGAAGCCAGGATTTAGTCGGTTATTAACAAAAAGTTTTACATCTGAATTTCCTCATGTTGAGAGATACTTTTGGACATTGGTTAATCTTCCTAATTTTCGCAAGATATTGGGGGAGGTGAAACAAGCAGAATCTATTCCAGCTGTTCAGTTAGTGATGAAACCTTCACAGCCTAAGGAATCTGCAGAAACAAAGGTCAAGGTTCAGACGAATAAAGAGGCCAAGAAAGAACCAACAGAACCTAAAGTAGAAGAATCTGCTCAGGAAGAGGAGGCACCCAAGCCCAAGGCAAAGAATCCTCTTGATCTTTTGCCTCCTAGCAAGATGATACTGGATGAATGGAAAAGACTTTATTCAAACACAAAGACCAACTTCCGTGAGGTTGCTGTTAAAGGATTCTGGGAAATGTATGATCCCGAAGGTTACTCTCTTTGGTTTTGCGAGTACAAGTACAATGATGAAAATACTGTTTCATTCGTCACTCTGAATAAGGTGGGCGGTTTTCTACAGCAAATGGATTTGGCTCGTAAGTATGCTTTTGGGAAGATGTTGGTGATTGGCTCTGAGCCTCCTTTCAAGGTGAAGGGCTTGTGGCTGTTCCGCGGGCAAGAAATTCCCCAGTTCACAATGGATGAGTGTTATGACATGAAACTGTATGATTGGCGGAAGGTTGATATCACTGATGAGGATCAAATAGAGCGTGTGAATCAGATGATTGAAGATCATGAGCCCTTTGAGGGGGAGCCATTGTTGGATGCCAAATGTTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

426

Amino Acids

48.97

Weight (kDa)

7.58

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_3	PF13417	15 - 90	5.1e-06	Glutathione S-transferase, N-terminal domain
GST_N	PF02798	16 - 85	1.3e-10	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	26 - 85	7.1e-06	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	137 - 200	3e-07	Glutathione S-transferase, C-terminal domain
EF1G	PF00647	265 - 373	2.5e-41	Elongation factor 1 gamma, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09640 AT1G57720 AT1G57720
fragaria_vesca	FvH4_5g28250 FvH4_5g28250 FvH4_5g32590 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560
malus_domestica	MD08G1244100.v1.1 MD15G1403200.v1.1 MD15G1438400.v1.1
prunus_persica	Prupe.1G549300_v2.0.a1 Prupe.1G549300_v2.0.a1 Prupe.1G581500_v2.0.a1 Prupe.1G581500_v2.0.a1
pyrus_communis	pycom08g21180 pycom15g36060 pycom15g38640
rosa_chinensis	RchiOBHm_Chr7g0220411 RchiOBHm_Chr7g0229581 RchiOBHm_Chr7g0229711 RchiOBHm_Chr7g0230101 RchiOBHm_Chr7g0230191
rosa_laevigata	RLG00000001508 RLG00000001510
rosa_multiflora	Rmu_sc0000693.1_g000058 Rmu_sc0000851.1_g000010 Rmu_sc0001621.1_g000005 Rmu_sc0001918.1_g000014 Rmu_sc0002666.1_g000007 Rmu_sc0002822.1_g000020 Rmu_sc0002822.1_g000031 Rmu_sc0004110.1_g000004 Rmu_ssc0000189.1_g000051
rosa_roxburghii	Rroxscaffold_3G00230290 Rroxscaffold_3G00230310 Rroxscaffold_3G00239390
rosa_rugosa	Rorug07G0193900 Rorug07G0259200 Rorug07G0259700 Rorug07G0259900 Rorug07G0260000
rosa_samantha	Rh7AG334900 Rh7AG408700 Rh7AG409300 Rh7AG409800 Rh7BG325900 Rh7BG387800 Rh7BG388100 Rh7BG388200 Rh7BG388600 Rh7CG352600 Rh7CG427700
rosa_wichuraiana	Rw0G018580 Rw0G022570 Rw7G028550 Rw7G033930 Rw7G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	781
AccII	CGCG	1 cut(s)	1110
AciI	CCGC	5 cut(s)	266, 1005, 1108, 1110, 1171
AclWI	GGATC	2 cut(s)	914, 1203
AcsI	RAATTY	3 cut(s)	126, 554, 1119
AfaI	GTAC	4 cut(s)	98, 458, 953, 959
AfiI	CCNNNNNNNGG	5 cut(s)	118, 183, 382, 1244, 1245
AflIII	ACRYGT	2 cut(s)	453, 500
AjnI	CCWGG	2 cut(s)	459, 514
AjuI	GAANNNNNNNTTGG	4 cut(s)	101, 133, 195, 227
AluBI	AGCT	3 cut(s)	190, 258, 650
AluI	AGCT	3 cut(s)	190, 258, 650
Alw21I	GWGCWC	1 cut(s)	421
AlwI	GGATC	2 cut(s)	914, 1203
AoxI	GGCC	1 cut(s)	726
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	3 cut(s)	126, 554, 1119
ArsI	GACNNNNNNTTYG	2 cut(s)	490, 522
Asp700I	GAANNNNTTC	1 cut(s)	642
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	4 cut(s)	133, 637, 1072, 1099
AvaII	GGWCC	1 cut(s)	215
AxyI	CCTNAGG	1 cut(s)	681
BanI	GGYRCC	1 cut(s)	781
BanII	GRGCYC	1 cut(s)	1239
BbsI	GAAGAC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	421
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	2 cut(s)	130, 336
BciT130I	CCWGG	2 cut(s)	461, 516
BfaI	CTAG	2 cut(s)	255, 825
BfmI	CTRYAG	2 cut(s)	690, 1013
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	2 cut(s)	461, 516
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	2 cut(s)	783, 1251
BmrFI	CCNGG	2 cut(s)	461, 516
BmrI	ACTGGG	1 cut(s)	1120
BmsI	GCATC	3 cut(s)	316, 320, 1252
BmuI	ACTGGG	1 cut(s)	1120
BpiI	GAAGAC	1 cut(s)	62
Bpu10I	CCTNAGC	1 cut(s)	768
BsaAI	YACGTR	1 cut(s)	83
BsaBI	GATNNNNATC	1 cut(s)	1194
BsaJI	CCNNGG	2 cut(s)	792, 1108
BsaXI	ACNNNNNCTCC	2 cut(s)	1241, 1271
Bsc4I	CCNNNNNNNGG	5 cut(s)	118, 183, 382, 1244, 1245
Bse1I	ACTGG	2 cut(s)	843, 1126
Bse21I	CCTNAGG	1 cut(s)	681
Bse3DI	GCAATG	3 cut(s)	237, 238, 302
Bse8I	GATNNNNATC	1 cut(s)	1194
BseBI	CCWGG	2 cut(s)	461, 516
BseDI	CCNNGG	2 cut(s)	792, 1108
BseGI	GGATG	4 cut(s)	147, 847, 1144, 1267
BseJI	GATNNNNATC	1 cut(s)	1194
BseLI	CCNNNNNNNGG	5 cut(s)	118, 183, 382, 1244, 1245
BseMI	GCAATG	3 cut(s)	237, 238, 302
BseMII	CTCAG	2 cut(s)	782, 1062
BseNI	ACTGG	2 cut(s)	843, 1126
BseRI	GAGGAG	2 cut(s)	9, 791
BseXI	GCAGC	1 cut(s)	76
Bsh1236I	CGCG	1 cut(s)	1110
BshFI	GGCC	1 cut(s)	728
BshNI	GGYRCC	1 cut(s)	781
BsiHKAI	GWGCWC	1 cut(s)	421
BslI	CCNNNNNNNGG	5 cut(s)	118, 183, 382, 1244, 1245
BsmI	GAATGC	1 cut(s)	469
BsnI	GGCC	1 cut(s)	728
Bsp1286I	GDGCHC	2 cut(s)	421, 1239
Bsp143I	GATC	4 cut(s)	811, 919, 1195, 1228
BspACI	CCGC	5 cut(s)	266, 1005, 1108, 1110, 1171
BspANI	GGCC	1 cut(s)	728
BspCNI	CTCAG	2 cut(s)	781, 1063
BspFNI	CGCG	1 cut(s)	1110
BspHI	TCATGA	1 cut(s)	1231
BspLI	GGNNCC	2 cut(s)	783, 1251
BspMAI	CTGCAG	1 cut(s)	694
BspPI	GGATC	2 cut(s)	914, 1203
BspT107I	GGYRCC	1 cut(s)	781
BsrDI	GCAATG	3 cut(s)	237, 238, 302
BsrI	ACTGG	2 cut(s)	843, 1126
BssECI	CCNNGG	2 cut(s)	792, 1108
BssMI	GATC	4 cut(s)	811, 919, 1195, 1228
BssT1I	CCWWGG	1 cut(s)	792
Bst2UI	CCWGG	2 cut(s)	461, 516
Bst4CI	ACNGT	3 cut(s)	101, 976, 1161
Bst6I	CTCTTC	2 cut(s)	407, 768
BstAPI	GCANNNNNTGC	2 cut(s)	86, 425
BstBAI	YACGTR	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	244, 1112
BstDEI	CTNAG	3 cut(s)	681, 768, 1071
BstDSI	CCRYGG	1 cut(s)	1108
BstF5I	GGATG	4 cut(s)	147, 847, 1144, 1267
BstFNI	CGCG	1 cut(s)	1110
BstKTI	GATC	4 cut(s)	814, 922, 1198, 1231
BstMBI	GATC	4 cut(s)	811, 919, 1195, 1228
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 425
BstNI	CCWGG	2 cut(s)	461, 516
BstNSI	RCATGY	2 cut(s)	457, 504
BstSCI	CCNGG	2 cut(s)	459, 514
BstSFI	CTRYAG	2 cut(s)	690, 1013
BstUI	CGCG	1 cut(s)	1110
BstV1I	GCAGC	1 cut(s)	76
BstV2I	GAAGAC	1 cut(s)	62
Bsu36I	CCTNAGG	1 cut(s)	681
BsuRI	GGCC	1 cut(s)	728
BtgI	CCRYGG	1 cut(s)	1108
BtgZI	GCGATG	1 cut(s)	355
BtsCI	GGATG	4 cut(s)	147, 847, 1144, 1267
BtsIMutI	CAGTG	2 cut(s)	106, 1185
Cac8I	GCNNGC	2 cut(s)	244, 1112
CciI	TCATGA	1 cut(s)	1231
Cfr13I	GGNCC	1 cut(s)	215
Cfr42I	CCGCGG	1 cut(s)	1111
CsiI	ACCWGGT	1 cut(s)	459
Csp6I	GTAC	4 cut(s)	97, 457, 952, 958
CviAII	CATG	6 cut(s)	47, 454, 501, 563, 1153, 1232
CviQI	GTAC	4 cut(s)	97, 457, 952, 958
DdeI	CTNAG	3 cut(s)	681, 768, 1071
DpnI	GATC	4 cut(s)	813, 921, 1197, 1230
DpnII	GATC	4 cut(s)	811, 919, 1195, 1228
Eam1104I	CTCTTC	2 cut(s)	407, 768
EarI	CTCTTC	2 cut(s)	407, 768
EciI	GGCGGA	1 cut(s)	1186
Eco130I	CCWWGG	1 cut(s)	792
Eco24I	GRGCYC	1 cut(s)	1239
Eco32I	GATATC	2 cut(s)	490, 1183
Eco47I	GGWCC	1 cut(s)	215
Eco81I	CCTNAGG	1 cut(s)	681
EcoRII	CCWGG	2 cut(s)	459, 514
EcoRV	GATATC	2 cut(s)	490, 1183
EcoT14I	CCWWGG	1 cut(s)	792
EcoT38I	GRGCYC	1 cut(s)	1239
ErhI	CCWWGG	1 cut(s)	792
FaeI	CATG	6 cut(s)	50, 457, 504, 566, 1156, 1235
FalI	AAGNNNNNCTT	2 cut(s)	863, 895
FatI	CATG	6 cut(s)	46, 453, 500, 562, 1152, 1231
FauI	CCCGC	1 cut(s)	1103
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	4 cut(s)	154, 854, 1151, 1274
FriOI	GRGCYC	1 cut(s)	1239
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	2 cut(s)	255, 825
GluI	GCNGC	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	728
Hin1II	CATG	6 cut(s)	50, 457, 504, 566, 1156, 1235
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	6 cut(s)	638, 686, 761, 802, 903, 1213
HphI	GGTGA	4 cut(s)	133, 637, 1072, 1099
Hpy166II	GTNNAC	3 cut(s)	109, 373, 1131
Hpy188I	TCNGA	6 cut(s)	28, 553, 714, 993, 1072, 1218
Hpy188III	TCNNGA	4 cut(s)	770, 809, 923, 1232
Hpy8I	GTNNAC	3 cut(s)	109, 373, 1131
HpyAV	CCTTC	5 cut(s)	386, 681, 920, 1084, 1168
HpyCH4III	ACNGT	3 cut(s)	101, 976, 1161
HpyCH4IV	ACGT	2 cut(s)	82, 479
HpyCH4V	TGCA	5 cut(s)	46, 75, 242, 311, 692
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 425
HpyF3I	CTNAG	3 cut(s)	681, 768, 1071
HpySE526I	ACGT	2 cut(s)	82, 479
Hsp92II	CATG	6 cut(s)	50, 457, 504, 566, 1156, 1235
KspI	CCGCGG	1 cut(s)	1111
Kzo9I	GATC	4 cut(s)	811, 919, 1195, 1228
LmnI	GCTCC	2 cut(s)	292, 1249
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	3 cut(s)	316, 320, 1252
MabI	ACCWGGT	1 cut(s)	459
MaeI	CTAG	2 cut(s)	255, 825
MaeII	ACGT	2 cut(s)	82, 479
MaeIII	GTNAC	3 cut(s)	250, 929, 985
MalI	GATC	4 cut(s)	813, 921, 1197, 1230
MboI	GATC	4 cut(s)	811, 919, 1195, 1228
MboII	GAAGA	8 cut(s)	67, 396, 424, 587, 770, 785, 1063, 1238
MhlI	GDGCHC	2 cut(s)	421, 1239
MluCI	AATT	9 cut(s)	116, 126, 160, 170, 399, 505, 554, 601, 1119
MmeI	TCCRAC	2 cut(s)	474, 1239
MroXI	GAANNNNTTC	1 cut(s)	642
MseI	TTAA	3 cut(s)	533, 591, 897
MspA1I	CMGCKG	2 cut(s)	650, 1110
MspR9I	CCNGG	2 cut(s)	461, 516
Mva1269I	GAATGC	1 cut(s)	469
MvaI	CCWGG	2 cut(s)	461, 516
MvnI	CGCG	1 cut(s)	1110
MwoI	GCNNNNNNNGC	2 cut(s)	86, 425
NdeII	GATC	4 cut(s)	811, 919, 1195, 1228
NlaIII	CATG	6 cut(s)	50, 457, 504, 566, 1156, 1235
NlaIV	GGNNCC	2 cut(s)	783, 1251
NmeAIII	GCCGAG	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	985
NspI	RCATGY	2 cut(s)	457, 504
PagI	TCATGA	1 cut(s)	1231
PciI	ACATGT	2 cut(s)	453, 500
PctI	GAATGC	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	642
PfeI	GAWTC	6 cut(s)	638, 686, 761, 802, 903, 1213
PkrI	GCNGC	1 cut(s)	91
Ppu21I	YACGTR	1 cut(s)	83
PscI	ACATGT	2 cut(s)	453, 500
Psp6I	CCWGG	2 cut(s)	459, 514
PspGI	CCWGG	2 cut(s)	459, 514
PspN4I	GGNNCC	2 cut(s)	783, 1251
PspPI	GGNCC	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	694
PvuII	CAGCTG	1 cut(s)	650
RsaI	GTAC	4 cut(s)	98, 458, 953, 959
RsaNI	GTAC	4 cut(s)	97, 457, 952, 958
SacII	CCGCGG	1 cut(s)	1111
SaqAI	TTAA	3 cut(s)	533, 591, 897
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	4 cut(s)	811, 919, 1195, 1228
Sau96I	GGNCC	1 cut(s)	215
ScrFI	CCNGG	2 cut(s)	461, 516
SduI	GDGCHC	2 cut(s)	421, 1239
SexAI	ACCWGGT	1 cut(s)	459
SfaNI	GCATC	3 cut(s)	316, 320, 1252
SfcI	CTRYAG	2 cut(s)	690, 1013
Sfr303I	CCGCGG	1 cut(s)	1111
SgrBI	CCGCGG	1 cut(s)	1111
SinI	GGWCC	1 cut(s)	215
Sse9I	AATT	9 cut(s)	116, 126, 160, 170, 399, 505, 554, 601, 1119
SsiI	CCGC	5 cut(s)	266, 1005, 1108, 1110, 1171
SspMI	CTAG	2 cut(s)	255, 825
StyD4I	CCNGG	2 cut(s)	459, 514
StyI	CCWWGG	1 cut(s)	792
TaaI	ACNGT	3 cut(s)	101, 976, 1161
TaiI	ACGT	2 cut(s)	85, 482
TasI	AATT	9 cut(s)	116, 126, 160, 170, 399, 505, 554, 601, 1119
TatI	WGTACW	3 cut(s)	96, 951, 957
TfiI	GAWTC	6 cut(s)	638, 686, 761, 802, 903, 1213
Tru1I	TTAA	3 cut(s)	533, 591, 897
Tru9I	TTAA	3 cut(s)	533, 591, 897
TscAI	CASTG	2 cut(s)	106, 1192
TseFI	GTSAC	1 cut(s)	985
TseI	GCWGC	1 cut(s)	89
Tsp45I	GTSAC	1 cut(s)	985
TspDTI	ATGAA	6 cut(s)	428, 680, 858, 969, 981, 1169
TspGWI	ACGGA	1 cut(s)	872
TspRI	CASTG	2 cut(s)	106, 1192
VpaK11BI	GGWCC	1 cut(s)	215
XapI	RAATTY	3 cut(s)	126, 554, 1119
XceI	RCATGY	2 cut(s)	457, 504
XcmI	CCANNNNNNNNNTGG	1 cut(s)	457
XmnI	GAANNNNTTC	1 cut(s)	642
XspI	CTAG	2 cut(s)	255, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.