MD08G1244100.v1.1

Elongation factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
30929758 .. 30932924
3167 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1244100.v1.1.491

Sequence Viewer

Length: 1260 bp
ATGGCTTTGGTCTTGCATGCAGGGAAGACAAACAAAAATGGTTACAAGGTGCTCATTGTTGCCGAGTACAGTGGTGTGAAAGTACTTGCACCCAACTTTGAGATTGGTGTCACAAACAAGACTCCTGAGTATTTGAAGTTAAACCCTATTGGAAAGTATCCACTGTTGATAACACCTGATGGTCCCATCTTTGAGAGTAACGCCATTGCACGCTATGTCGCACGCTTAAAGCCTGACAATCCTCTGTGTGGTTCTTCTCTGATTGACTATGCCCATATTGAGCAATGGATTGATTTTGGATCCATGGAGATTGATGCTAACGTACTTAACTGGTGGTTACCGAGAGTGGGACAACGCGTGTACCTTCCTCCAGCTGAGGAATTTGCAATTTCTTCGTTGAAGAGAGCACTAGGTGCCTTGAACACCCATCTTGCTTCCAACACATACCTAGTTGGGCATTCTGTAACCCTTGCTGACATTGTTATTGGATGCAATTTGTACTTTGGGTTCACCGAAATTTTGACTAAGAGCTTCACCTCAGAGTTTCCCCACGTTGAGAGATACTTCTGGACCCTGGTCAATCAACCAACCTTCAAAAAGGTAATTGGTGATGTCAAGCAGGCTGTTTCAGTTCCACCAGTTGTATCTGCAAAGAAACCTGCCCAGCCTGCTAAAGGCAAGGCCAAGGAGGAGCCCAAGAAAGAAGCCAAAAAGGAGCCGGAAAAACCCAAGGCAGAAGCTGCTGAGGAAGTGGAAGAGGCTCCAAAGCCTAAACCCAAGAATCCTCTTGATCTGCTTCCCCCAAGTAAGATGGTATTGGACGACTGGAAGAGACTTTACTCTAACACAAAGACCAACTTCCGTGAGGTTGCTATTAAAGGATTCTGGGACATGTACGATCCCGAAGGATACTCTCTTTGGTTCTGTGAGTACAAGTACAATGATGAGAATACAGTTTCCTTTGTGACACTGAACAAGGTGGGTGGATTCCTTCAGCGGATGGATTTGGCCCGCAAGTATGCTTTTGGAAAGATGCTTGTAATTGGCTCAGAGGCACCCTTCAAGGTGAAGGGGCTGTGGCTCTTCCGTGGGCAAGAAATTCCCAAATTTGTGATGGATGAGTGCTACGACATGGAGCTCTACAACTGGACAAAGGTTGACATTTCGGATGAAAACCAAAAGGAGCGTGTCAACCAGATGATCGAAGACCAGGAGCCGTTCGAGGGAGAGGCTCTTTTGGATGCCAAGTGCTTCAAGTGA

Protein Analysis

420

Amino Acids

47.57

Weight (kDa)

6.58

Isoelectric Point (pI)

32.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 11 - 75 4.5e-12 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 16 - 75 2.8e-06 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 16 - 80 3.4e-06 Glutathione S-transferase, N-terminal domain
GST_C PF00043 133 - 196 3.5e-09 Glutathione S-transferase, C-terminal domain
EF1G PF00647 258 - 366 1.2e-42 Elongation factor 1 gamma, conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 667
AccB1I GGYRCC 2 cut(s) 413, 1054
AccII CGCG 1 cut(s) 357
AciI CCGC 2 cut(s) 997, 1012
AclWI GGATC 3 cut(s) 294, 307, 893
AcsI RAATTY 4 cut(s) 380, 516, 1098, 1106
AcuI CTGAAG 1 cut(s) 977
AdeI CACNNNGTG 1 cut(s) 413
AfaI GTAC 8 cut(s) 68, 84, 324, 362, 500, 896, 932, 938
AfiI CCNNNNNNNGG 4 cut(s) 248, 347, 674, 1223
AflIII ACRYGT 2 cut(s) 355, 891
AgsI TTSAA 6 cut(s) 136, 400, 421, 595, 1063, 1255
AjnI CCWGG 2 cut(s) 573, 1209
AluBI AGCT 4 cut(s) 374, 531, 740, 1138
AluI AGCT 4 cut(s) 374, 531, 740, 1138
Alw21I GWGCWC 3 cut(s) 54, 409, 1140
Alw26I GTCTC 1 cut(s) 826
AlwI GGATC 3 cut(s) 294, 307, 893
AlwNI CAGNNNCTG 1 cut(s) 740
AoxI GGCC 2 cut(s) 681, 1008
ApeKI GCWGC 1 cut(s) 740
ApoI RAATTY 4 cut(s) 380, 516, 1098, 1106
AspS9I GGNCC 3 cut(s) 182, 570, 1009
AsuHPI GGTGA 4 cut(s) 502, 526, 620, 1078
AvaII GGWCC 2 cut(s) 182, 570
BaeI ACNNNNGTAYC 2 cut(s) 344, 377
BamHI GGATCC 1 cut(s) 299
BanI GGYRCC 2 cut(s) 413, 1054
BanII GRGCYC 2 cut(s) 696, 1140
BarI GAAGNNNNNNTAC 2 cut(s) 821, 853
BbsI GAAGAC 2 cut(s) 32, 1212
Bbv12I GWGCWC 3 cut(s) 54, 409, 1140
BbvCI CCTCAGC 2 cut(s) 375, 744
BbvI GCAGC 1 cut(s) 727
BccI CCATC 6 cut(s) 173, 194, 435, 805, 994, 1108
BceAI ACGGC 1 cut(s) 1201
BcgI CGANNNNNNTGC 2 cut(s) 375, 409
BciT130I CCWGG 2 cut(s) 575, 1211
BciVI GTATCC 2 cut(s) 168, 902
BcoDI GTCTC 1 cut(s) 826
BfaI CTAG 2 cut(s) 410, 449
BfuAI ACCTGC 1 cut(s) 667
BfuI GTATCC 2 cut(s) 168, 902
BisI GCNGC 1 cut(s) 741
BlsI GCNGC 1 cut(s) 742
BmcAI AGTACT 1 cut(s) 84
Bme1390I CCNGG 2 cut(s) 575, 1211
Bme18I GGWCC 2 cut(s) 182, 570
BmgT120I GGNCC 3 cut(s) 182, 570, 1009
BmiI GGNNCC 9 cut(s) 184, 301, 415, 572, 693, 717, 762, 1056, 1215
BmrFI CCNGG 2 cut(s) 575, 1211
BmsI GCATC 4 cut(s) 304, 479, 1023, 1231
BoxI GACNNNNGTC 1 cut(s) 575
BpiI GAAGAC 2 cut(s) 32, 1212
BpmI CTGGAG 1 cut(s) 354
Bpu10I CCTNAGC 2 cut(s) 375, 744
BsaJI CCNNGG 5 cut(s) 303, 573, 684, 729, 1087
Bsc4I CCNNNNNNNGG 4 cut(s) 248, 347, 674, 1223
Bse1I ACTGG 4 cut(s) 335, 638, 830, 1151
Bse3DI GCAATG 2 cut(s) 204, 290
BseBI CCWGG 2 cut(s) 575, 1211
BseDI CCNNGG 5 cut(s) 303, 573, 684, 729, 1087
BseGI GGATG 5 cut(s) 494, 1005, 1123, 1174, 1246
BseLI CCNNNNNNNGG 4 cut(s) 248, 347, 674, 1223
BseMI GCAATG 2 cut(s) 204, 290
BseMII CTCAG 5 cut(s) 117, 366, 552, 735, 1062
BseNI ACTGG 4 cut(s) 335, 638, 830, 1151
BseRI GAGGAG 1 cut(s) 704
BseXI GCAGC 1 cut(s) 727
BseYI CCCAGC 1 cut(s) 663
Bsh1236I CGCG 1 cut(s) 357
BshFI GGCC 2 cut(s) 683, 1010
BshNI GGYRCC 2 cut(s) 413, 1054
BsiHKAI GWGCWC 3 cut(s) 54, 409, 1140
BsiSI CCGG 1 cut(s) 719
BslFI GGGAC 3 cut(s) 168, 363, 902
BslI CCNNNNNNNGG 4 cut(s) 248, 347, 674, 1223
BsmAI GTCTC 1 cut(s) 826
BsmFI GGGAC 3 cut(s) 168, 363, 902
BsmI GAATGC 1 cut(s) 457
BsnI GGCC 2 cut(s) 683, 1010
Bsp1286I GDGCHC 4 cut(s) 54, 409, 696, 1140
Bsp143I GATC 4 cut(s) 299, 790, 898, 1200
Bsp19I CCATGG 1 cut(s) 303
BspACI CCGC 2 cut(s) 997, 1012
BspANI GGCC 2 cut(s) 683, 1010
BspCNI CTCAG 5 cut(s) 118, 367, 551, 736, 1061
BspFNI CGCG 1 cut(s) 357
BspLI GGNNCC 9 cut(s) 184, 301, 415, 572, 693, 717, 762, 1056, 1215
BspMI ACCTGC 1 cut(s) 667
BspPI GGATC 3 cut(s) 294, 307, 893
BspQI GCTCTTC 1 cut(s) 1088
BspT107I GGYRCC 2 cut(s) 413, 1054
BsrDI GCAATG 2 cut(s) 204, 290
BsrI ACTGG 4 cut(s) 335, 638, 830, 1151
BssECI CCNNGG 5 cut(s) 303, 573, 684, 729, 1087
BssMI GATC 4 cut(s) 299, 790, 898, 1200
BssT1I CCWWGG 3 cut(s) 303, 684, 729
Bst2UI CCWGG 2 cut(s) 575, 1211
Bst4CI ACNGT 3 cut(s) 71, 165, 955
Bst6I CTCTTC 4 cut(s) 395, 750, 824, 1088
BstAPI GCANNNNNTGC 2 cut(s) 413, 740
BstC8I GCNNGC 6 cut(s) 18, 211, 223, 621, 669, 1012
BstDEI CTNAG 6 cut(s) 126, 375, 525, 538, 744, 1048
BstDSI CCRYGG 2 cut(s) 303, 1087
BstEII GGTNACC 1 cut(s) 336
BstENI CCTNNNNNAGG 1 cut(s) 672
BstF5I GGATG 5 cut(s) 494, 1005, 1123, 1174, 1246
BstFNI CGCG 1 cut(s) 357
BstKTI GATC 4 cut(s) 302, 793, 901, 1203
BstMAI GTCTC 1 cut(s) 826
BstMBI GATC 4 cut(s) 299, 790, 898, 1200
BstMWI GCNNNNNNNGC 3 cut(s) 413, 668, 740
BstNI CCWGG 2 cut(s) 575, 1211
BstNSI RCATGY 2 cut(s) 20, 895
BstPAI GACNNNNGTC 1 cut(s) 575
BstPI GGTNACC 1 cut(s) 336
BstSCI CCNGG 2 cut(s) 573, 1209
BstUI CGCG 1 cut(s) 357
BstV1I GCAGC 1 cut(s) 727
BstV2I GAAGAC 2 cut(s) 32, 1212
BstX2I RGATCY 1 cut(s) 299
BstYI RGATCY 1 cut(s) 299
BsuI GTATCC 2 cut(s) 168, 902
BsuRI GGCC 2 cut(s) 683, 1010
BtgI CCRYGG 2 cut(s) 303, 1087
BtsCI GGATG 5 cut(s) 494, 1005, 1123, 1174, 1246
BtsIMutI CAGTG 3 cut(s) 76, 161, 968
BveI ACCTGC 1 cut(s) 667
Cac8I GCNNGC 6 cut(s) 18, 211, 223, 621, 669, 1012
CaiI CAGNNNCTG 1 cut(s) 740
Cfr13I GGNCC 3 cut(s) 182, 570, 1009
Csp6I GTAC 8 cut(s) 67, 83, 323, 361, 499, 895, 931, 937
CspCI CAANNNNNGTGG 2 cut(s) 964, 999
CviAII CATG 4 cut(s) 17, 304, 892, 1132
CviQI GTAC 8 cut(s) 67, 83, 323, 361, 499, 895, 931, 937
DdeI CTNAG 6 cut(s) 126, 375, 525, 538, 744, 1048
DpnI GATC 4 cut(s) 301, 792, 900, 1202
DpnII GATC 4 cut(s) 299, 790, 898, 1200
DraIII CACNNNGTG 1 cut(s) 413
Eam1104I CTCTTC 4 cut(s) 395, 750, 824, 1088
EarI CTCTTC 4 cut(s) 395, 750, 824, 1088
Ecl136II GAGCTC 1 cut(s) 1138
Eco130I CCWWGG 3 cut(s) 303, 684, 729
Eco24I GRGCYC 2 cut(s) 696, 1140
Eco47I GGWCC 2 cut(s) 182, 570
Eco53kI GAGCTC 1 cut(s) 1138
Eco57I CTGAAG 1 cut(s) 977
Eco91I GGTNACC 1 cut(s) 336
EcoICRI GAGCTC 1 cut(s) 1138
EcoNI CCTNNNNNAGG 1 cut(s) 672
EcoO65I GGTNACC 1 cut(s) 336
EcoRII CCWGG 2 cut(s) 573, 1209
EcoT14I CCWWGG 3 cut(s) 303, 684, 729
EcoT38I GRGCYC 2 cut(s) 696, 1140
ErhI CCWWGG 3 cut(s) 303, 684, 729
FaeI CATG 4 cut(s) 20, 307, 895, 1135
FaiI YATR 9 cut(s) 18, 216, 270, 276, 305, 445, 893, 1020, 1133
FalI AAGNNNNNCTT 2 cut(s) 842, 874
FaqI GGGAC 3 cut(s) 168, 363, 902
FatI CATG 4 cut(s) 16, 303, 891, 1131
FauI CCCGC 1 cut(s) 1019
Fnu4HI GCNGC 1 cut(s) 741
FokI GGATG 5 cut(s) 501, 1012, 1130, 1181, 1253
FriOI GRGCYC 2 cut(s) 696, 1140
Fsp4HI GCNGC 1 cut(s) 741
FspBI CTAG 2 cut(s) 410, 449
GluI GCNGC 1 cut(s) 741
GsaI CCCAGC 1 cut(s) 667
GsuI CTGGAG 1 cut(s) 354
HaeIII GGCC 2 cut(s) 683, 1010
HapII CCGG 1 cut(s) 719
Hin1II CATG 4 cut(s) 20, 307, 895, 1135
HincII GTYRAC 2 cut(s) 1159, 1192
HindII GTYRAC 2 cut(s) 1159, 1192
HinfI GANTC 4 cut(s) 121, 781, 882, 987
HpaII CCGG 1 cut(s) 719
HphI GGTGA 4 cut(s) 502, 526, 620, 1078
Hpy166II GTNNAC 4 cut(s) 361, 510, 1159, 1192
Hpy188I TCNGA 4 cut(s) 261, 541, 1051, 1168
Hpy188III TCNNGA 4 cut(s) 125, 568, 788, 902
Hpy8I GTNNAC 4 cut(s) 361, 510, 1159, 1192
HpyAV CCTTC 6 cut(s) 374, 601, 899, 1001, 1063, 1069
HpyCH4III ACNGT 3 cut(s) 71, 165, 955
HpyCH4IV ACGT 2 cut(s) 321, 552
HpyCH4V TGCA 7 cut(s) 16, 20, 89, 209, 386, 492, 650
HpyF10VI GCNNNNNNNGC 3 cut(s) 413, 668, 740
HpyF3I CTNAG 6 cut(s) 126, 375, 525, 538, 744, 1048
HpySE526I ACGT 2 cut(s) 321, 552
Hsp92II CATG 4 cut(s) 20, 307, 895, 1135
Kzo9I GATC 4 cut(s) 299, 790, 898, 1200
LguI GCTCTTC 1 cut(s) 1088
LmnI GCTCC 6 cut(s) 691, 715, 766, 1135, 1183, 1213
Lsp1109I GCAGC 1 cut(s) 727
LweI GCATC 4 cut(s) 304, 479, 1023, 1231
MaeI CTAG 2 cut(s) 410, 449
MaeII ACGT 2 cut(s) 321, 552
MaeIII GTNAC 6 cut(s) 41, 109, 197, 336, 463, 964
MalI GATC 4 cut(s) 301, 792, 900, 1202
MboI GATC 4 cut(s) 299, 790, 898, 1200
MboII GAAGA 8 cut(s) 37, 246, 384, 412, 767, 841, 1075, 1217
MflI RGATCY 1 cut(s) 299
MhlI GDGCHC 4 cut(s) 54, 409, 696, 1140
MluCI AATT 8 cut(s) 380, 387, 493, 516, 603, 1041, 1098, 1106
MluI ACGCGT 1 cut(s) 355
MlyI GAGTC 1 cut(s) 115
MmeI TCCRAC 1 cut(s) 462
MseI TTAA 4 cut(s) 140, 227, 327, 876
MspA1I CMGCKG 2 cut(s) 374, 997
MspI CCGG 1 cut(s) 719
MspR9I CCNGG 2 cut(s) 575, 1211
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 2 cut(s) 575, 1211
MvnI CGCG 1 cut(s) 357
MwoI GCNNNNNNNGC 3 cut(s) 413, 668, 740
NcoI CCATGG 1 cut(s) 303
NdeII GATC 4 cut(s) 299, 790, 898, 1200
NlaIII CATG 4 cut(s) 20, 307, 895, 1135
NlaIV GGNNCC 9 cut(s) 184, 301, 415, 572, 693, 717, 762, 1056, 1215
NmeAIII GCCGAG 1 cut(s) 88
NmuCI GTSAC 2 cut(s) 109, 964
NspI RCATGY 2 cut(s) 20, 895
PaeI GCATGC 1 cut(s) 20
PciI ACATGT 1 cut(s) 891
PciSI GCTCTTC 1 cut(s) 1088
PctI GAATGC 1 cut(s) 457
PfeI GAWTC 3 cut(s) 781, 882, 987
PkrI GCNGC 1 cut(s) 742
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PscI ACATGT 1 cut(s) 891
PshAI GACNNNNGTC 1 cut(s) 575
Psp124BI GAGCTC 1 cut(s) 1140
Psp6I CCWGG 2 cut(s) 573, 1209
PspEI GGTNACC 1 cut(s) 336
PspFI CCCAGC 1 cut(s) 663
PspGI CCWGG 2 cut(s) 573, 1209
PspN4I GGNNCC 9 cut(s) 184, 301, 415, 572, 693, 717, 762, 1056, 1215
PspPI GGNCC 3 cut(s) 182, 570, 1009
PsrI GAACNNNNNNTAC 2 cut(s) 491, 523
PstNI CAGNNNCTG 1 cut(s) 740
PsuI RGATCY 1 cut(s) 299
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 8 cut(s) 68, 84, 324, 362, 500, 896, 932, 938
RsaNI GTAC 8 cut(s) 67, 83, 323, 361, 499, 895, 931, 937
SacI GAGCTC 1 cut(s) 1140
SapI GCTCTTC 1 cut(s) 1088
SaqAI TTAA 4 cut(s) 140, 227, 327, 876
SatI GCNGC 1 cut(s) 741
Sau3AI GATC 4 cut(s) 299, 790, 898, 1200
Sau96I GGNCC 3 cut(s) 182, 570, 1009
ScaI AGTACT 1 cut(s) 84
SchI GAGTC 1 cut(s) 115
ScrFI CCNGG 2 cut(s) 575, 1211
SduI GDGCHC 4 cut(s) 54, 409, 696, 1140
SfaNI GCATC 4 cut(s) 304, 479, 1023, 1231
SinI GGWCC 2 cut(s) 182, 570
SphI GCATGC 1 cut(s) 20
Sse9I AATT 8 cut(s) 380, 387, 493, 516, 603, 1041, 1098, 1106
SsiI CCGC 2 cut(s) 997, 1012
SspMI CTAG 2 cut(s) 410, 449
SstI GAGCTC 1 cut(s) 1140
StyD4I CCNGG 2 cut(s) 573, 1209
StyI CCWWGG 3 cut(s) 303, 684, 729
TaaI ACNGT 3 cut(s) 71, 165, 955
TaiI ACGT 2 cut(s) 324, 555
TaqI TCGA 2 cut(s) 1203, 1221
TasI AATT 8 cut(s) 380, 387, 493, 516, 603, 1041, 1098, 1106
TatI WGTACW 5 cut(s) 66, 82, 498, 930, 936
TfiI GAWTC 3 cut(s) 781, 882, 987
Tru1I TTAA 4 cut(s) 140, 227, 327, 876
Tru9I TTAA 4 cut(s) 140, 227, 327, 876
TscAI CASTG 3 cut(s) 76, 168, 975
TseFI GTSAC 2 cut(s) 109, 964
TseI GCWGC 1 cut(s) 740
Tsp45I GTSAC 2 cut(s) 109, 964
TspDTI ATGAA 1 cut(s) 1185
TspGWI ACGGA 2 cut(s) 851, 1076
TspRI CASTG 3 cut(s) 76, 168, 975
VpaK11BI GGWCC 2 cut(s) 182, 570
XagI CCTNNNNNAGG 1 cut(s) 672
XapI RAATTY 4 cut(s) 380, 516, 1098, 1106
XceI RCATGY 2 cut(s) 20, 895
XcmI CCANNNNNNNNNTGG 1 cut(s) 1111
XspI CTAG 2 cut(s) 410, 449
ZrmI AGTACT 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.