Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000992

Physical Location & Seq

Genomic Coordinates Reverse (-)

42311581 .. 42314565

Gene Structure 2985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG388100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGATATGTAATTTAACACTGGGTTTTAACCGGTTGTTGACAAAAAGTTTTACCTCAGAATTTCCTCATGTTGAGAGATACTTTTGGACATTGGTTAATCAGCCTAATTTTCGCAAGATACTGGGTGAGGTGAAACAAGCTGAATCTGTTCCAGCTGTTCAGTCAGCAAAGAAGCCTTCTCAGCCTAAGGAACCTGCAAAGAAAGAGGCCAAGAAAGAAGTGAAGAAAGAACCGGCAAAGCCTAAAGTAGAAGAGGCTCTGGAGGAAGAGGCACCCAAGCCCAAGGCAAAGAATCCTCTTGATCTTTTGCCTCCTAGCAAGATGATTCTGGATGAATGGAAAAGGCTTTATTCAAACACAAAGACCAACTTCCGTGAGGTTGCTGTCAAAGGCTTCTGGGACATGTATGATCCAGAGGGTTACTCCCTTTGGTTTTGCGATTACAAATACAACGATGAAAATACAGTTTCATTTGTGACTTTGAACAAGGTGGGCGGTTTTCTGCAGCGGATGGATTTGGCTCGTAAATATGCGTTTGGGAAGATGTTGGTGATTGGGTCTGATCCTCCTTTCAAGGTGAAGGGCTTGTGGCTGTTCCGTGGGCAAGAGGTTCCCCAGTTCATAATTGATGAATGTTATGACATGGAACTGTATGATTGGTGTAAGGTTGATATAACTGATGAGGATCAAAAGGAGCGCGTGAACCAGATGATTGAAGATCACGAGCCTTTTGAGGGGGAGGCTTTGTTGGATGCCAAATGCTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

256

Amino Acids

29.88

Weight (kDa)

5.93

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF1G	PF00647	95 - 203	8.1e-43	Elongation factor 1 gamma, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09640 AT1G57720 AT1G57720
fragaria_vesca	FvH4_5g28250 FvH4_5g28250 FvH4_5g32590 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560
malus_domestica	MD08G1244100.v1.1 MD15G1403200.v1.1 MD15G1438400.v1.1
prunus_persica	Prupe.1G549300_v2.0.a1 Prupe.1G549300_v2.0.a1 Prupe.1G581500_v2.0.a1 Prupe.1G581500_v2.0.a1
pyrus_communis	pycom08g21180 pycom15g36060 pycom15g38640
rosa_chinensis	RchiOBHm_Chr7g0220411 RchiOBHm_Chr7g0229581 RchiOBHm_Chr7g0229711 RchiOBHm_Chr7g0230101 RchiOBHm_Chr7g0230191
rosa_laevigata	RLG00000001508 RLG00000001510
rosa_multiflora	Rmu_sc0000693.1_g000058 Rmu_sc0000851.1_g000010 Rmu_sc0001621.1_g000005 Rmu_sc0001918.1_g000014 Rmu_sc0002666.1_g000007 Rmu_sc0002822.1_g000020 Rmu_sc0002822.1_g000031 Rmu_sc0004110.1_g000004 Rmu_ssc0000189.1_g000051
rosa_roxburghii	Rroxscaffold_3G00230290 Rroxscaffold_3G00230310 Rroxscaffold_3G00239390
rosa_rugosa	Rorug07G0193900 Rorug07G0259200 Rorug07G0259700 Rorug07G0259900 Rorug07G0260000
rosa_samantha	Rh7AG334900 Rh7AG408700 Rh7AG409300 Rh7AG409800 Rh7BG325900 Rh7BG387800 Rh7BG388100 Rh7BG388200 Rh7BG388600 Rh7CG352600 Rh7CG427700
rosa_wichuraiana	Rw0G018580 Rw0G022570 Rw7G028550 Rw7G033930 Rw7G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	202
AccB1I	GGYRCC	1 cut(s)	271
AccII	CGCG	1 cut(s)	699
AciI	CCGC	2 cut(s)	495, 508
AclWI	GGATC	3 cut(s)	404, 557, 693
AcsI	RAATTY	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	734
AflIII	ACRYGT	1 cut(s)	402
AgeI	ACCGGT	1 cut(s)	30
AgsI	TTSAA	5 cut(s)	354, 484, 574, 716, 766
AluBI	AGCT	2 cut(s)	140, 155
AluI	AGCT	2 cut(s)	140, 155
AlwI	GGATC	3 cut(s)	404, 557, 693
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	505
ApoI	RAATTY	1 cut(s)	59
AsiGI	ACCGGT	1 cut(s)	30
Asp700I	GAANNNNTTC	1 cut(s)	147
AspLEI	GCGC	1 cut(s)	699
AsuHPI	GGTGA	4 cut(s)	137, 142, 562, 589
AxyI	CCTNAGG	1 cut(s)	186
BanI	GGYRCC	1 cut(s)	271
BauI	CACGAG	1 cut(s)	722
BbvI	GCAGC	1 cut(s)	517
BccI	CCATC	1 cut(s)	505
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	503
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	1 cut(s)	506
BlsI	GCNGC	1 cut(s)	507
BmiI	GGNNCC	3 cut(s)	192, 273, 612
BmrI	ACTGGG	3 cut(s)	29, 131, 610
BmsI	GCATC	1 cut(s)	742
BmuI	ACTGGG	3 cut(s)	29, 131, 610
BplI	GAGNNNNNCTC	2 cut(s)	407, 439
BpmI	CTGGAG	1 cut(s)	281
BsaBI	GATNNNNATC	1 cut(s)	684
BsaJI	CCNNGG	2 cut(s)	282, 598
BsaWI	WCCGGW	1 cut(s)	30
BsaXI	ACNNNNNCTCC	2 cut(s)	731, 761
Bsc4I	CCNNNNNNNGG	1 cut(s)	734
Bse118I	RCCGGY	2 cut(s)	30, 232
Bse1I	ACTGG	3 cut(s)	24, 126, 616
Bse21I	CCTNAGG	1 cut(s)	186
Bse8I	GATNNNNATC	1 cut(s)	684
BseDI	CCNNGG	2 cut(s)	282, 598
BseGI	GGATG	3 cut(s)	337, 516, 757
BseJI	GATNNNNATC	1 cut(s)	684
BseLI	CCNNNNNNNGG	1 cut(s)	734
BseMII	CTCAG	2 cut(s)	69, 194
BseNI	ACTGG	3 cut(s)	24, 126, 616
BseXI	GCAGC	1 cut(s)	517
Bsh1236I	CGCG	1 cut(s)	699
BshFI	GGCC	1 cut(s)	209
BshNI	GGYRCC	1 cut(s)	271
BshTI	ACCGGT	1 cut(s)	30
BsiSI	CCGG	2 cut(s)	31, 233
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	1 cut(s)	734
BsmFI	GGGAC	1 cut(s)	413
BsnI	GGCC	1 cut(s)	209
Bsp143I	GATC	5 cut(s)	301, 409, 562, 685, 718
BspACI	CCGC	2 cut(s)	495, 508
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	2 cut(s)	68, 193
BspFNI	CGCG	1 cut(s)	699
BspLI	GGNNCC	3 cut(s)	192, 273, 612
BspMAI	CTGCAG	1 cut(s)	507
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	3 cut(s)	404, 557, 693
BspT107I	GGYRCC	1 cut(s)	271
BsrFI	RCCGGY	2 cut(s)	30, 232
BsrI	ACTGG	3 cut(s)	24, 126, 616
BssAI	RCCGGY	2 cut(s)	30, 232
BssECI	CCNNGG	2 cut(s)	282, 598
BssMI	GATC	5 cut(s)	301, 409, 562, 685, 718
BssSI	CACGAG	1 cut(s)	722
BssT1I	CCWWGG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	722
Bst4CI	ACNGT	2 cut(s)	466, 651
Bst6I	CTCTTC	2 cut(s)	246, 261
BstDEI	CTNAG	3 cut(s)	55, 180, 186
BstDSI	CCRYGG	1 cut(s)	598
BstF5I	GGATG	3 cut(s)	337, 516, 757
BstFNI	CGCG	1 cut(s)	699
BstHHI	GCGC	1 cut(s)	699
BstKTI	GATC	5 cut(s)	304, 412, 565, 688, 721
BstMBI	GATC	5 cut(s)	301, 409, 562, 685, 718
BstMWI	GCNNNNNNNGC	1 cut(s)	181
BstNSI	RCATGY	1 cut(s)	406
BstSFI	CTRYAG	1 cut(s)	503
BstUI	CGCG	1 cut(s)	699
BstV1I	GCAGC	1 cut(s)	517
Bsu36I	CCTNAGG	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	209
BtgI	CCRYGG	1 cut(s)	598
BtsCI	GGATG	3 cut(s)	337, 516, 757
BtsIMutI	CAGTG	1 cut(s)	17
BveI	ACCTGC	1 cut(s)	202
CfoI	GCGC	1 cut(s)	699
Cfr10I	RCCGGY	2 cut(s)	30, 232
CspAI	ACCGGT	1 cut(s)	30
CviAII	CATG	3 cut(s)	68, 403, 643
DdeI	CTNAG	3 cut(s)	55, 180, 186
DpnI	GATC	5 cut(s)	303, 411, 564, 687, 720
DpnII	GATC	5 cut(s)	301, 409, 562, 685, 718
Eam1104I	CTCTTC	2 cut(s)	246, 261
EarI	CTCTTC	2 cut(s)	246, 261
Eco130I	CCWWGG	1 cut(s)	282
Eco81I	CCTNAGG	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	3 cut(s)	71, 406, 646
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	3 cut(s)	67, 402, 642
Fnu4HI	GCNGC	1 cut(s)	506
FokI	GGATG	3 cut(s)	344, 523, 764
Fsp4HI	GCNGC	1 cut(s)	506
FspBI	CTAG	1 cut(s)	315
GlaI	GCGC	1 cut(s)	698
GluI	GCNGC	1 cut(s)	506
GsuI	CTGGAG	1 cut(s)	281
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	2 cut(s)	31, 233
HhaI	GCGC	1 cut(s)	699
Hin1II	CATG	3 cut(s)	71, 406, 646
Hin6I	GCGC	1 cut(s)	697
HinP1I	GCGC	1 cut(s)	697
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HinfI	GANTC	3 cut(s)	143, 292, 325
HpaII	CCGG	2 cut(s)	31, 233
HphI	GGTGA	4 cut(s)	137, 142, 562, 589
Hpy166II	GTNNAC	2 cut(s)	39, 703
Hpy188I	TCNGA	2 cut(s)	58, 562
Hpy188III	TCNNGA	5 cut(s)	260, 299, 329, 413, 722
Hpy8I	GTNNAC	2 cut(s)	39, 703
HpyAV	CCTTC	2 cut(s)	186, 574
HpyCH4III	ACNGT	2 cut(s)	466, 651
HpyCH4V	TGCA	2 cut(s)	197, 505
HpyF10VI	GCNNNNNNNGC	1 cut(s)	181
HpyF3I	CTNAG	3 cut(s)	55, 180, 186
Hsp92II	CATG	3 cut(s)	71, 406, 646
HspAI	GCGC	1 cut(s)	697
Kzo9I	GATC	5 cut(s)	301, 409, 562, 685, 718
LmnI	GCTCC	1 cut(s)	694
Lsp1109I	GCAGC	1 cut(s)	517
LweI	GCATC	1 cut(s)	742
MaeI	CTAG	1 cut(s)	315
MaeIII	GTNAC	2 cut(s)	419, 475
MalI	GATC	5 cut(s)	303, 411, 564, 687, 720
MboI	GATC	5 cut(s)	301, 409, 562, 685, 718
MboII	GAAGA	5 cut(s)	235, 263, 278, 553, 728
MluCI	AATT	4 cut(s)	10, 59, 106, 624
MmeI	TCCRAC	1 cut(s)	729
MroXI	GAANNNNTTC	1 cut(s)	147
MseI	TTAA	3 cut(s)	14, 27, 96
MspA1I	CMGCKG	2 cut(s)	155, 508
MspI	CCGG	2 cut(s)	31, 233
MvnI	CGCG	1 cut(s)	699
MwoI	GCNNNNNNNGC	1 cut(s)	181
NdeII	GATC	5 cut(s)	301, 409, 562, 685, 718
NlaIII	CATG	3 cut(s)	71, 406, 646
NlaIV	GGNNCC	3 cut(s)	192, 273, 612
NmuCI	GTSAC	1 cut(s)	475
NspI	RCATGY	1 cut(s)	406
PciI	ACATGT	1 cut(s)	402
PdmI	GAANNNNTTC	1 cut(s)	147
PfeI	GAWTC	3 cut(s)	143, 292, 325
PinAI	ACCGGT	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	507
PscI	ACATGT	1 cut(s)	402
PspN4I	GGNNCC	3 cut(s)	192, 273, 612
PstI	CTGCAG	1 cut(s)	507
PvuII	CAGCTG	1 cut(s)	155
SaqAI	TTAA	3 cut(s)	14, 27, 96
SatI	GCNGC	1 cut(s)	506
Sau3AI	GATC	5 cut(s)	301, 409, 562, 685, 718
SfaNI	GCATC	1 cut(s)	742
SfcI	CTRYAG	1 cut(s)	503
Sse9I	AATT	4 cut(s)	10, 59, 106, 624
SsiI	CCGC	2 cut(s)	495, 508
SspMI	CTAG	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	2 cut(s)	466, 651
TasI	AATT	4 cut(s)	10, 59, 106, 624
TfiI	GAWTC	3 cut(s)	143, 292, 325
Tru1I	TTAA	3 cut(s)	14, 27, 96
Tru9I	TTAA	3 cut(s)	14, 27, 96
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	1 cut(s)	505
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	5 cut(s)	348, 459, 471, 610, 645
TspGWI	ACGGA	2 cut(s)	362, 587
TspRI	CASTG	1 cut(s)	24
XapI	RAATTY	1 cut(s)	59
XceI	RCATGY	1 cut(s)	406
XmnI	GAANNNNTTC	1 cut(s)	147
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.