Rroxscaffold_3G00230290

Elongation factor 1 gamma, conserved domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
15118491 .. 15123379
4889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00230290.1

Sequence Viewer

Length: 1164 bp
ATGGCGGCCTTGGTGCGCGCCGGGTTGGAGCTTTCCGTCGGCCCGTTGTCGTGGTTCTTTGGCATCCGGGATCCGAGAGGCGGCGAGAGATCTCGTCCTCATGACGGTGATGAGCCGGCGAGGGAGTTGCATGATTGGAAGACCAATAAAAATGGTTGCAAGGCACGTATTGCTGCCGAGTACAGTGGTGTGAACCTTGAATTGGTGAAGAATTTTGAGATGGGGATGTCCAATAAGACTGCCAATTTTCTCAAATTGACCCCCTATTGGGAAGGAAGCGGCAATTTCTTCCTTGAAGAGAGCACAACTGCTTTGAACACTCATCTTGCTTCCAACACGTACCTGGTTGGGCATTCTATCACGTTGGCTGATATCATTATGACATGTAATCTGAAGCCGGGATTTAGTCAGTTATTAACAAAAAGTTTTACATCTGAATTTCCTCATGTTGAGAGATACTTTTGGACATTGGTTAATCTTCATAATTTTCGCAAGATATTGGGGGAGGTGAAACAAGCAGAATCTATTCCAGCTGTTCAGTTAGTGATGAAGCCTTCACAGCCTAAGCAATCTGCAGAAACAAAGGTCAAGGTTCAGATGAATAAAGAGGCCAAGAAAGAACCAACAGAACCTAAAGTAGAAGAGTCTGCTCAGGAAGAGGAGGCACCCAAGCCCGAGGCAAAGAATCCTCTTGATCTTTTGCCTCCTAGCAGGATGATACTGGATGAATGGAAAAGACTTTATTCAAACACAAAGACCAACTTCTGTGAGGTTGCTGTTAAAGGATTCTGGGAAATGTATGATCCTGAAGGTTACTCTCTTTGGTTTTGCGAGTACAAGTACAATGATGAAAATACTGTTTCATTCGTCACTCTGAATAAGGTGGGCGGTTTTCTACAGCGAATGGATTTGGCTCGTAAGTATGCTTTTGGGAAGATGTTGGTGATTGGCTCTGAGCCTCCTTTCAAGATGAAGGGCTTGTGGCTGTTCCGCGGGCAAGAAATTCCCCATTTCATAATGGATGAGTGTTATGACATGGAACTGTATGATTGGCGGAAGGTTGATATCACTGATGAGGATCAAAAAGAGCGTGTGAATCAGATGATTGAAGATAATGAGCCCTTTGAGGGGGAGCCATTGTTGGATGCCAAATGTTTCAAGTGA

Protein Analysis

387

Amino Acids

44.56

Weight (kDa)

5.51

Isoelectric Point (pI)

37.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_C PF00043 103 - 159 4.5e-07 Glutathione S-transferase, C-terminal domain
EF1G PF00647 227 - 334 1.2e-41 Elongation factor 1 gamma, conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 664
AccII CGCG 2 cut(s) 18, 993
AciI CCGC 7 cut(s) 5, 81, 279, 888, 991, 993, 1054
AclWI GGATC 4 cut(s) 65, 78, 797, 1086
AcsI RAATTY 3 cut(s) 211, 437, 1002
AcuI CTGAAG 2 cut(s) 413, 828
AfaI GTAC 4 cut(s) 182, 341, 836, 842
AfiI CCNNNNNNNGG 7 cut(s) 80, 104, 202, 267, 268, 1127, 1128
AflIII ACRYGT 2 cut(s) 336, 383
AgsI TTSAA 7 cut(s) 200, 296, 316, 747, 967, 1109, 1159
AjnI CCWGG 1 cut(s) 342
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AluBI AGCT 2 cut(s) 31, 533
AluI AGCT 2 cut(s) 31, 533
Alw21I GWGCWC 1 cut(s) 305
AlwI GGATC 4 cut(s) 65, 78, 797, 1086
Ama87I CYCGRG 1 cut(s) 674
AoxI GGCC 3 cut(s) 6, 40, 609
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 3 cut(s) 211, 437, 1002
Asp700I GAANNNNTTC 1 cut(s) 525
AspLEI GCGC 2 cut(s) 18, 20
AspS9I GGNCC 1 cut(s) 41
AsuC2I CCSGG 3 cut(s) 22, 68, 399
AsuHPI GGTGA 4 cut(s) 119, 217, 520, 955
AvaI CYCGRG 1 cut(s) 674
BamHI GGATCC 1 cut(s) 70
BanI GGYRCC 1 cut(s) 664
BanII GRGCYC 1 cut(s) 1122
BbsI GAAGAC 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 305
BbvI GCAGC 1 cut(s) 160
BccI CCATC 1 cut(s) 214
BcgI CGANNNNNNTGC 2 cut(s) 109, 143
BciT130I CCWGG 1 cut(s) 344
BcnI CCSGG 3 cut(s) 22, 68, 399
BfaI CTAG 1 cut(s) 708
BfmI CTRYAG 2 cut(s) 573, 896
BglII AGATCT 1 cut(s) 89
BisI GCNGC 4 cut(s) 6, 82, 174, 280
BlsI GCNGC 4 cut(s) 7, 83, 175, 281
Bme1390I CCNGG 4 cut(s) 22, 68, 344, 399
BmeT110I CYCGRG 1 cut(s) 674
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 3 cut(s) 72, 666, 1134
BmrFI CCNGG 4 cut(s) 22, 68, 344, 399
BmsI GCATC 2 cut(s) 72, 1135
BpiI GAAGAC 1 cut(s) 146
Bpu10I CCTNAGC 2 cut(s) 564, 651
BpuMI CCSGG 3 cut(s) 22, 68, 399
BsaAI YACGTR 2 cut(s) 167, 339
BsaBI GATNNNNATC 1 cut(s) 1077
BsaJI CCNNGG 3 cut(s) 9, 675, 991
BsaXI ACNNNNNCTCC 2 cut(s) 1124, 1154
Bsc4I CCNNNNNNNGG 7 cut(s) 80, 104, 202, 267, 268, 1127, 1128
Bse118I RCCGGY 1 cut(s) 115
Bse1I ACTGG 1 cut(s) 726
Bse8I GATNNNNATC 1 cut(s) 1077
BseBI CCWGG 1 cut(s) 344
BseDI CCNNGG 3 cut(s) 9, 675, 991
BseGI GGATG 6 cut(s) 63, 231, 720, 730, 1027, 1150
BseJI GATNNNNATC 1 cut(s) 1077
BseLI CCNNNNNNNGG 7 cut(s) 80, 104, 202, 267, 268, 1127, 1128
BseMII CTCAG 2 cut(s) 665, 945
BseNI ACTGG 1 cut(s) 726
BsePI GCGCGC 1 cut(s) 16
BseRI GAGGAG 1 cut(s) 674
BseXI GCAGC 1 cut(s) 160
Bsh1236I CGCG 2 cut(s) 18, 993
BshFI GGCC 3 cut(s) 8, 42, 611
BshNI GGYRCC 1 cut(s) 664
BsiHKAI GWGCWC 1 cut(s) 305
BsiHKCI CYCGRG 1 cut(s) 674
BsiSI CCGG 4 cut(s) 21, 67, 116, 398
BslI CCNNNNNNNGG 7 cut(s) 80, 104, 202, 267, 268, 1127, 1128
BsmI GAATGC 1 cut(s) 352
BsnI GGCC 3 cut(s) 8, 42, 611
BsoBI CYCGRG 1 cut(s) 674
Bsp1286I GDGCHC 2 cut(s) 305, 1122
Bsp143I GATC 5 cut(s) 70, 89, 694, 802, 1078
BspACI CCGC 7 cut(s) 5, 81, 279, 888, 991, 993, 1054
BspANI GGCC 3 cut(s) 8, 42, 611
BspCNI CTCAG 2 cut(s) 664, 946
BspFNI CGCG 2 cut(s) 18, 993
BspHI TCATGA 1 cut(s) 100
BspLI GGNNCC 3 cut(s) 72, 666, 1134
BspMAI CTGCAG 1 cut(s) 577
BspPI GGATC 4 cut(s) 65, 78, 797, 1086
BspT107I GGYRCC 1 cut(s) 664
BsrFI RCCGGY 1 cut(s) 115
BsrI ACTGG 1 cut(s) 726
BssAI RCCGGY 1 cut(s) 115
BssECI CCNNGG 3 cut(s) 9, 675, 991
BssHII GCGCGC 1 cut(s) 16
BssMI GATC 5 cut(s) 70, 89, 694, 802, 1078
BssT1I CCWWGG 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 344
Bst4CI ACNGT 4 cut(s) 107, 185, 859, 1044
Bst6I CTCTTC 3 cut(s) 291, 636, 651
BstAPI GCANNNNNTGC 1 cut(s) 170
BstBAI YACGTR 2 cut(s) 167, 339
BstC8I GCNNGC 3 cut(s) 18, 117, 995
BstDEI CTNAG 3 cut(s) 564, 651, 954
BstDSI CCRYGG 1 cut(s) 991
BstF5I GGATG 6 cut(s) 63, 231, 720, 730, 1027, 1150
BstFNI CGCG 2 cut(s) 18, 993
BstHHI GCGC 2 cut(s) 18, 20
BstKTI GATC 5 cut(s) 73, 92, 697, 805, 1081
BstMBI GATC 5 cut(s) 70, 89, 694, 802, 1078
BstMWI GCNNNNNNNGC 2 cut(s) 170, 559
BstNI CCWGG 1 cut(s) 344
BstNSI RCATGY 1 cut(s) 387
BstSCI CCNGG 4 cut(s) 20, 66, 342, 397
BstSFI CTRYAG 2 cut(s) 573, 896
BstUI CGCG 2 cut(s) 18, 993
BstV1I GCAGC 1 cut(s) 160
BstV2I GAAGAC 1 cut(s) 146
BstX2I RGATCY 2 cut(s) 70, 89
BstYI RGATCY 2 cut(s) 70, 89
BsuRI GGCC 3 cut(s) 8, 42, 611
BtgI CCRYGG 1 cut(s) 991
BtsCI GGATG 6 cut(s) 63, 231, 720, 730, 1027, 1150
BtsIMutI CAGTG 2 cut(s) 190, 1068
Cac8I GCNNGC 3 cut(s) 18, 117, 995
CciI TCATGA 1 cut(s) 100
CfoI GCGC 2 cut(s) 18, 20
Cfr10I RCCGGY 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 41
Cfr42I CCGCGG 1 cut(s) 994
CsiI ACCWGGT 1 cut(s) 342
Csp6I GTAC 4 cut(s) 181, 340, 835, 841
CviAII CATG 5 cut(s) 101, 131, 384, 446, 1036
CviQI GTAC 4 cut(s) 181, 340, 835, 841
DdeI CTNAG 3 cut(s) 564, 651, 954
DpnI GATC 5 cut(s) 72, 91, 696, 804, 1080
DpnII GATC 5 cut(s) 70, 89, 694, 802, 1078
Eam1104I CTCTTC 3 cut(s) 291, 636, 651
EarI CTCTTC 3 cut(s) 291, 636, 651
EciI GGCGGA 1 cut(s) 1069
Eco130I CCWWGG 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 1122
Eco32I GATATC 2 cut(s) 373, 1066
Eco57I CTGAAG 2 cut(s) 413, 828
Eco88I CYCGRG 1 cut(s) 674
EcoRII CCWGG 1 cut(s) 342
EcoRV GATATC 2 cut(s) 373, 1066
EcoT14I CCWWGG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 1122
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 5 cut(s) 104, 134, 387, 449, 1039
FalI AAGNNNNNCTT 2 cut(s) 746, 778
FatI CATG 5 cut(s) 100, 130, 383, 445, 1035
FauI CCCGC 1 cut(s) 986
Fnu4HI GCNGC 4 cut(s) 6, 82, 174, 280
FokI GGATG 6 cut(s) 50, 238, 727, 737, 1034, 1157
FriOI GRGCYC 1 cut(s) 1122
Fsp4HI GCNGC 4 cut(s) 6, 82, 174, 280
FspBI CTAG 1 cut(s) 708
GlaI GCGC 2 cut(s) 17, 19
GluI GCNGC 4 cut(s) 6, 82, 174, 280
HaeIII GGCC 3 cut(s) 8, 42, 611
HapII CCGG 4 cut(s) 21, 67, 116, 398
HhaI GCGC 2 cut(s) 18, 20
Hin1II CATG 5 cut(s) 104, 134, 387, 449, 1039
Hin6I GCGC 2 cut(s) 16, 18
HinP1I GCGC 2 cut(s) 16, 18
HinfI GANTC 5 cut(s) 521, 644, 685, 786, 1096
HpaII CCGG 4 cut(s) 21, 67, 116, 398
HphI GGTGA 4 cut(s) 119, 217, 520, 955
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 7 cut(s) 75, 393, 436, 597, 876, 955, 1101
Hpy188III TCNNGA 5 cut(s) 101, 653, 692, 806, 967
Hpy8I GTNNAC 1 cut(s) 193
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 5 cut(s) 266, 564, 803, 967, 1051
HpyCH4III ACNGT 4 cut(s) 107, 185, 859, 1044
HpyCH4IV ACGT 3 cut(s) 166, 338, 362
HpyCH4V TGCA 3 cut(s) 130, 159, 575
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 559
HpyF3I CTNAG 3 cut(s) 564, 651, 954
HpySE526I ACGT 3 cut(s) 166, 338, 362
Hsp92II CATG 5 cut(s) 104, 134, 387, 449, 1039
HspAI GCGC 2 cut(s) 16, 18
KroI GCCGGC 1 cut(s) 115
KroNI GCCGGC 1 cut(s) 117
KspI CCGCGG 1 cut(s) 994
Kzo9I GATC 5 cut(s) 70, 89, 694, 802, 1078
LmnI GCTCC 2 cut(s) 28, 1132
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 2 cut(s) 72, 1135
MabI ACCWGGT 1 cut(s) 342
MaeI CTAG 1 cut(s) 708
MaeII ACGT 3 cut(s) 166, 338, 362
MaeIII GTNAC 2 cut(s) 812, 868
MalI GATC 5 cut(s) 72, 91, 696, 804, 1080
MboI GATC 5 cut(s) 70, 89, 694, 802, 1078
MboII GAAGA 9 cut(s) 151, 220, 280, 308, 470, 653, 668, 946, 1121
MflI RGATCY 2 cut(s) 70, 89
MhlI GDGCHC 2 cut(s) 305, 1122
MluCI AATT 8 cut(s) 200, 211, 244, 254, 283, 437, 484, 1002
MlyI GAGTC 1 cut(s) 653
MmeI TCCRAC 3 cut(s) 6, 357, 1122
MroNI GCCGGC 1 cut(s) 115
MroXI GAANNNNTTC 1 cut(s) 525
MseI TTAA 3 cut(s) 416, 474, 780
MslI CAYNNNNRTG 1 cut(s) 105
MspA1I CMGCKG 2 cut(s) 533, 993
MspI CCGG 4 cut(s) 21, 67, 116, 398
MspR9I CCNGG 4 cut(s) 22, 68, 344, 399
Mva1269I GAATGC 1 cut(s) 352
MvaI CCWGG 1 cut(s) 344
MvnI CGCG 2 cut(s) 18, 993
MwoI GCNNNNNNNGC 2 cut(s) 170, 559
NaeI GCCGGC 1 cut(s) 117
NciI CCSGG 3 cut(s) 22, 68, 399
NdeII GATC 5 cut(s) 70, 89, 694, 802, 1078
NgoMIV GCCGGC 1 cut(s) 115
NlaIII CATG 5 cut(s) 104, 134, 387, 449, 1039
NlaIV GGNNCC 3 cut(s) 72, 666, 1134
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 868
NspI RCATGY 1 cut(s) 387
PagI TCATGA 1 cut(s) 100
PauI GCGCGC 1 cut(s) 16
PciI ACATGT 1 cut(s) 383
PctI GAATGC 1 cut(s) 352
PdiI GCCGGC 1 cut(s) 117
PdmI GAANNNNTTC 1 cut(s) 525
PfeI GAWTC 4 cut(s) 521, 685, 786, 1096
PfoI TCCNGGA 1 cut(s) 66
PkrI GCNGC 4 cut(s) 7, 83, 175, 281
PleI GAGTC 1 cut(s) 652
PpsI GAGTC 1 cut(s) 652
Ppu21I YACGTR 2 cut(s) 167, 339
PscI ACATGT 1 cut(s) 383
Psp6I CCWGG 1 cut(s) 342
PspGI CCWGG 1 cut(s) 342
PspN4I GGNNCC 3 cut(s) 72, 666, 1134
PspPI GGNCC 1 cut(s) 41
PstI CTGCAG 1 cut(s) 577
PsuI RGATCY 2 cut(s) 70, 89
PteI GCGCGC 1 cut(s) 16
PvuII CAGCTG 1 cut(s) 533
RsaI GTAC 4 cut(s) 182, 341, 836, 842
RsaNI GTAC 4 cut(s) 181, 340, 835, 841
RseI CAYNNNNRTG 1 cut(s) 105
SacII CCGCGG 1 cut(s) 994
SaqAI TTAA 3 cut(s) 416, 474, 780
SatI GCNGC 4 cut(s) 6, 82, 174, 280
Sau3AI GATC 5 cut(s) 70, 89, 694, 802, 1078
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 1 cut(s) 653
ScrFI CCNGG 4 cut(s) 22, 68, 344, 399
SduI GDGCHC 2 cut(s) 305, 1122
SexAI ACCWGGT 1 cut(s) 342
SfaNI GCATC 2 cut(s) 72, 1135
SfcI CTRYAG 2 cut(s) 573, 896
Sfr303I CCGCGG 1 cut(s) 994
SgrBI CCGCGG 1 cut(s) 994
SmiMI CAYNNNNRTG 1 cut(s) 105
Sse9I AATT 8 cut(s) 200, 211, 244, 254, 283, 437, 484, 1002
SsiI CCGC 7 cut(s) 5, 81, 279, 888, 991, 993, 1054
SspMI CTAG 1 cut(s) 708
StyD4I CCNGG 4 cut(s) 20, 66, 342, 397
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 4 cut(s) 107, 185, 859, 1044
TaiI ACGT 3 cut(s) 169, 341, 365
TasI AATT 8 cut(s) 200, 211, 244, 254, 283, 437, 484, 1002
TatI WGTACW 3 cut(s) 180, 834, 840
TauI GCSGC 3 cut(s) 8, 84, 282
TfiI GAWTC 4 cut(s) 521, 685, 786, 1096
Tru1I TTAA 3 cut(s) 416, 474, 780
Tru9I TTAA 3 cut(s) 416, 474, 780
TscAI CASTG 2 cut(s) 190, 1075
TseFI GTSAC 1 cut(s) 868
TseI GCWGC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 868
TspDTI ATGAA 8 cut(s) 470, 563, 614, 741, 852, 864, 986, 1003
TspGWI ACGGA 1 cut(s) 25
TspRI CASTG 2 cut(s) 190, 1075
XapI RAATTY 3 cut(s) 211, 437, 1002
XceI RCATGY 1 cut(s) 387
XcmI CCANNNNNNNNNTGG 1 cut(s) 340
XmnI GAANNNNTTC 1 cut(s) 525
XspI CTAG 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.