Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000992

Physical Location & Seq

Genomic Coordinates Reverse (-)

32228763 .. 32232204

Gene Structure 3442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG325900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCTCTGGTCCTGCATGCAGGGAGTACAAACAAAAATGCATACAAGACTCTCATTGCTGCAGAGTATACAGGTGTGAAAGTTGCACTTGCACCCAACTTTGAGATGGGCGTCTCGAACAAGACTCCTGAATTTCTCAAGATGAACCCGATTGGGAAGGTTCCTGTGCTGGAAACACCTGATGGTCCCATCTTCGAGAGTAATGCCATTGCACGTTACGTTACTCACTTGAAGGCTGACAATCCTCTTTATGGTTCATCTTCAATTGATTATGCCCATATCGAGCAATGGATTGATTTTGGATCCTTGGAGATTGATGCTAACATTGTTAATTGGTTTAGACCAAGAATGGGAAGGGCTGTCTATCTTCCTCCAGCAGAGGAAGCTGCAATTGCTGCATTGAAGAGAGCACTGGGTGCATTGAACACACACCTTGCTTCCTGCACATACCTTGTTGGGGATTCTGTCACCCTTGCTGACATCATTATGACATGCAATTTGTTTATGGGCTTCACTAAGCTCATGACTAAGAGCTTCACTTCAGAGTTTCCTCATGTTGAGAGATACTTCTGGACCATGGTCAATCAACCAAACTTCAAAAAGGTATTGGGTGAGGTTAAGCAGACGGATTCTGTTCCTGCTGTTCAATCTGCAAAGAAGCCTGCCCAGGCCAAAGAATCTGCTAAACCCAAGGCTAAGGAGGAGCCAAAGAAAGAAGCCAAGAAGGAGCCGGCAAAGCCCAAAGCAGAAGCTGAGGAGGAAGAGGCACCAAAGCCAAAACCCAAGAATCCTCTTGATCTGCTTCCCCCGAGTAAGATGATATTGGATGACTGGAAAAGGCTTTACTCCAACACGAAGACCAACTTCCGTGAGGTGGCAATTAAAGGTAATCATCTCAATTCATTACCCTTAACAGCTCAATGGTATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

310

Amino Acids

34.5

Weight (kDa)

9.12

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	8 - 74	3.7e-14	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 76	2.2e-08	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	16 - 81	3.7e-07	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	126 - 197	2.6e-12	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	126 - 190	9.1e-06	Glutathione S-transferase, C-terminal domain
GST_C_3	PF14497	132 - 201	6.6e-06	Glutathione S-transferase, C-terminal domain
EF1G	PF00647	260 - 288	1e-06	Elongation factor 1 gamma, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09640 AT1G57720 AT1G57720
fragaria_vesca	FvH4_5g28250 FvH4_5g28250 FvH4_5g32590 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560
malus_domestica	MD08G1244100.v1.1 MD15G1403200.v1.1 MD15G1438400.v1.1
prunus_persica	Prupe.1G549300_v2.0.a1 Prupe.1G549300_v2.0.a1 Prupe.1G581500_v2.0.a1 Prupe.1G581500_v2.0.a1
pyrus_communis	pycom08g21180 pycom15g36060 pycom15g38640
rosa_chinensis	RchiOBHm_Chr7g0220411 RchiOBHm_Chr7g0229581 RchiOBHm_Chr7g0229711 RchiOBHm_Chr7g0230101 RchiOBHm_Chr7g0230191
rosa_laevigata	RLG00000001508 RLG00000001510
rosa_multiflora	Rmu_sc0000693.1_g000058 Rmu_sc0000851.1_g000010 Rmu_sc0001621.1_g000005 Rmu_sc0001918.1_g000014 Rmu_sc0002666.1_g000007 Rmu_sc0002822.1_g000020 Rmu_sc0002822.1_g000031 Rmu_sc0004110.1_g000004 Rmu_ssc0000189.1_g000051
rosa_roxburghii	Rroxscaffold_3G00230290 Rroxscaffold_3G00230310 Rroxscaffold_3G00239390
rosa_rugosa	Rorug07G0193900 Rorug07G0259200 Rorug07G0259700 Rorug07G0259900 Rorug07G0260000
rosa_samantha	Rh7AG334900 Rh7AG408700 Rh7AG409300 Rh7AG409800 Rh7BG325900 Rh7BG387800 Rh7BG388100 Rh7BG388200 Rh7BG388600 Rh7CG352600 Rh7CG427700
rosa_wichuraiana	Rw0G018580 Rw0G022570 Rw7G028550 Rw7G033930 Rw7G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	766
AccI	GTMKAC	1 cut(s)	68
AclWI	GGATC	2 cut(s)	297, 310
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	525
AcyI	GRCGYC	1 cut(s)	111
AdeI	CACNNNGTG	1 cut(s)	416
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	4 cut(s)	251, 350, 457, 874
AgsI	TTSAA	6 cut(s)	232, 264, 403, 424, 598, 647
AjnI	CCWGG	1 cut(s)	666
AluBI	AGCT	5 cut(s)	386, 520, 534, 752, 917
AluI	AGCT	5 cut(s)	386, 520, 534, 752, 917
Alw21I	GWGCWC	1 cut(s)	412
Alw26I	GTCTC	1 cut(s)	118
AlwI	GGATC	2 cut(s)	297, 310
AlwNI	CAGNNNCTG	1 cut(s)	752
Ama87I	CYCGRG	1 cut(s)	808
AoxI	GGCC	1 cut(s)	669
ApeKI	GCWGC	3 cut(s)	59, 386, 395
ApoI	RAATTY	1 cut(s)	131
ArsI	GACNNNNNNTTYG	2 cut(s)	481, 513
AspS9I	GGNCC	3 cut(s)	10, 185, 573
AsuHPI	GGTGA	2 cut(s)	460, 623
AvaI	CYCGRG	1 cut(s)	808
AvaII	GGWCC	3 cut(s)	10, 185, 573
BamHI	GGATCC	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	766
BbsI	GAAGAC	1 cut(s)	863
Bbv12I	GWGCWC	1 cut(s)	412
BbvCI	CCTCAGC	1 cut(s)	753
BbvI	GCAGC	3 cut(s)	46, 373, 382
BccI	CCATC	3 cut(s)	100, 176, 197
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BciT130I	CCWGG	1 cut(s)	668
BcoDI	GTCTC	1 cut(s)	118
BfmI	CTRYAG	1 cut(s)	60
BisI	GCNGC	3 cut(s)	60, 387, 396
BlsI	GCNGC	3 cut(s)	61, 388, 397
Bme1390I	CCNGG	1 cut(s)	668
Bme18I	GGWCC	3 cut(s)	10, 185, 573
BmeT110I	CYCGRG	1 cut(s)	808
BmgT120I	GGNCC	3 cut(s)	10, 185, 573
BmiI	GGNNCC	6 cut(s)	162, 187, 304, 705, 729, 768
BmrFI	CCNGG	1 cut(s)	668
BmrI	ACTGGG	1 cut(s)	422
BmsI	GCATC	1 cut(s)	307
BmuI	ACTGGG	1 cut(s)	422
BoxI	GACNNNNGTC	1 cut(s)	578
BpiI	GAAGAC	1 cut(s)	863
BpmI	CTGGAG	1 cut(s)	357
Bpu10I	CCTNAGC	2 cut(s)	696, 753
BpuEI	CTTGAG	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	4 cut(s)	306, 576, 666, 690
Bsc4I	CCNNNNNNNGG	4 cut(s)	251, 350, 457, 874
Bse118I	RCCGGY	1 cut(s)	730
Bse1I	ACTGG	2 cut(s)	417, 836
Bse3DI	GCAATG	3 cut(s)	54, 207, 293
BseBI	CCWGG	1 cut(s)	668
BseDI	CCNNGG	4 cut(s)	306, 576, 666, 690
BseGI	GGATG	1 cut(s)	832
BseLI	CCNNNNNNNGG	4 cut(s)	251, 350, 457, 874
BseMI	GCAATG	3 cut(s)	54, 207, 293
BseMII	CTCAG	1 cut(s)	744
BseNI	ACTGG	2 cut(s)	417, 836
BseRI	GAGGAG	2 cut(s)	716, 770
BseXI	GCAGC	3 cut(s)	46, 373, 382
BsgI	GTGCAG	1 cut(s)	427
BshFI	GGCC	1 cut(s)	671
BshNI	GGYRCC	1 cut(s)	766
BsiHKAI	GWGCWC	1 cut(s)	412
BsiHKCI	CYCGRG	1 cut(s)	808
BsiSI	CCGG	1 cut(s)	731
BslFI	GGGAC	1 cut(s)	171
BslI	CCNNNNNNNGG	4 cut(s)	251, 350, 457, 874
BsmAI	GTCTC	1 cut(s)	118
BsmBI	CGTCTC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	171
BsnI	GGCC	1 cut(s)	671
BsoBI	CYCGRG	1 cut(s)	808
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp143I	GATC	2 cut(s)	302, 796
Bsp19I	CCATGG	1 cut(s)	576
BspANI	GGCC	1 cut(s)	671
BspCNI	CTCAG	1 cut(s)	745
BspHI	TCATGA	1 cut(s)	522
BspLI	GGNNCC	6 cut(s)	162, 187, 304, 705, 729, 768
BspMAI	CTGCAG	1 cut(s)	64
BspPI	GGATC	2 cut(s)	297, 310
BspT107I	GGYRCC	1 cut(s)	766
BsrDI	GCAATG	3 cut(s)	54, 207, 293
BsrFI	RCCGGY	1 cut(s)	730
BsrI	ACTGG	2 cut(s)	417, 836
BssAI	RCCGGY	1 cut(s)	730
BssECI	CCNNGG	4 cut(s)	306, 576, 666, 690
BssMI	GATC	2 cut(s)	302, 796
BssNAI	GTATAC	1 cut(s)	69
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	3 cut(s)	306, 576, 690
Bst1107I	GTATAC	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	668
Bst6I	CTCTTC	2 cut(s)	398, 756
BstACI	GRCGYC	1 cut(s)	111
BstAPI	GCANNNNNTGC	2 cut(s)	395, 416
BstC8I	GCNNGC	3 cut(s)	18, 663, 732
BstDEI	CTNAG	4 cut(s)	516, 528, 696, 753
BstDSI	CCRYGG	1 cut(s)	576
BstF5I	GGATG	1 cut(s)	832
BstKTI	GATC	2 cut(s)	305, 799
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	2 cut(s)	302, 796
BstMWI	GCNNNNNNNGC	5 cut(s)	383, 392, 395, 416, 736
BstNI	CCWGG	1 cut(s)	668
BstNSI	RCATGY	2 cut(s)	20, 495
BstPAI	GACNNNNGTC	1 cut(s)	578
BstSCI	CCNGG	1 cut(s)	666
BstSFI	CTRYAG	1 cut(s)	60
BstV1I	GCAGC	3 cut(s)	46, 373, 382
BstV2I	GAAGAC	1 cut(s)	863
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
BstZ17I	GTATAC	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	671
BtgI	CCRYGG	1 cut(s)	576
BtsCI	GGATG	1 cut(s)	832
BtsIMutI	CAGTG	1 cut(s)	410
Cac8I	GCNNGC	3 cut(s)	18, 663, 732
CaiI	CAGNNNCTG	1 cut(s)	752
CciI	TCATGA	1 cut(s)	522
Cfr10I	RCCGGY	1 cut(s)	730
Cfr13I	GGNCC	3 cut(s)	10, 185, 573
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	5 cut(s)	17, 492, 523, 554, 577
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	4 cut(s)	516, 528, 696, 753
DpnI	GATC	2 cut(s)	304, 798
DpnII	GATC	2 cut(s)	302, 796
DraIII	CACNNNGTG	1 cut(s)	416
Eam1104I	CTCTTC	2 cut(s)	398, 756
EarI	CTCTTC	2 cut(s)	398, 756
Eco130I	CCWWGG	3 cut(s)	306, 576, 690
Eco47I	GGWCC	3 cut(s)	10, 185, 573
Eco57I	CTGAAG	1 cut(s)	525
Eco88I	CYCGRG	1 cut(s)	808
EcoRII	CCWGG	1 cut(s)	666
EcoT14I	CCWWGG	3 cut(s)	306, 576, 690
EcoT22I	ATGCAT	1 cut(s)	43
ErhI	CCWWGG	3 cut(s)	306, 576, 690
Esp3I	CGTCTC	1 cut(s)	118
FaeI	CATG	5 cut(s)	20, 495, 526, 557, 580
FalI	AAGNNNNNCTT	4 cut(s)	72, 104, 848, 880
FaqI	GGGAC	1 cut(s)	171
FatI	CATG	5 cut(s)	16, 491, 522, 553, 576
FblI	GTMKAC	1 cut(s)	68
Fnu4HI	GCNGC	3 cut(s)	60, 387, 396
FokI	GGATG	1 cut(s)	839
Fsp4HI	GCNGC	3 cut(s)	60, 387, 396
GluI	GCNGC	3 cut(s)	60, 387, 396
GsuI	CTGGAG	1 cut(s)	357
HaeIII	GGCC	1 cut(s)	671
HapII	CCGG	1 cut(s)	731
HgaI	GACGC	1 cut(s)	100
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	5 cut(s)	20, 495, 526, 557, 580
HinfI	GANTC	6 cut(s)	49, 124, 461, 629, 677, 787
HpaII	CCGG	1 cut(s)	731
HphI	GGTGA	2 cut(s)	460, 623
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	1 cut(s)	544
Hpy188III	TCNNGA	7 cut(s)	115, 128, 139, 196, 523, 571, 794
Hpy8I	GTNNAC	1 cut(s)	69
HpyAV	CCTTC	4 cut(s)	151, 226, 348, 718
HpyCH4IV	ACGT	2 cut(s)	214, 219
HpyF10VI	GCNNNNNNNGC	5 cut(s)	383, 392, 395, 416, 736
HpyF3I	CTNAG	4 cut(s)	516, 528, 696, 753
HpySE526I	ACGT	2 cut(s)	214, 219
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	5 cut(s)	20, 495, 526, 557, 580
KroI	GCCGGC	1 cut(s)	730
KroNI	GCCGGC	1 cut(s)	732
Kzo9I	GATC	2 cut(s)	302, 796
LmnI	GCTCC	2 cut(s)	703, 727
Lsp1109I	GCAGC	3 cut(s)	46, 373, 382
LweI	GCATC	1 cut(s)	307
MaeII	ACGT	2 cut(s)	214, 219
MaeIII	GTNAC	3 cut(s)	215, 220, 466
MalI	GATC	2 cut(s)	304, 798
MboI	GATC	2 cut(s)	302, 796
MboII	GAAGA	6 cut(s)	184, 252, 359, 415, 773, 868
MfeI	CAATTG	2 cut(s)	264, 390
MflI	RGATCY	1 cut(s)	302
MhlI	GDGCHC	1 cut(s)	412
MluCI	AATT	7 cut(s)	131, 264, 331, 390, 496, 879, 898
MlyI	GAGTC	2 cut(s)	43, 118
MmeI	TCCRAC	1 cut(s)	873
Mph1103I	ATGCAT	1 cut(s)	43
MroNI	GCCGGC	1 cut(s)	730
MseI	TTAA	4 cut(s)	330, 618, 882, 911
MslI	CAYNNNNRTG	1 cut(s)	485
MspI	CCGG	1 cut(s)	731
MspR9I	CCNGG	1 cut(s)	668
MunI	CAATTG	2 cut(s)	264, 390
MvaI	CCWGG	1 cut(s)	668
MwoI	GCNNNNNNNGC	5 cut(s)	383, 392, 395, 416, 736
NaeI	GCCGGC	1 cut(s)	732
NcoI	CCATGG	1 cut(s)	576
NdeII	GATC	2 cut(s)	302, 796
NgoMIV	GCCGGC	1 cut(s)	730
NlaIII	CATG	5 cut(s)	20, 495, 526, 557, 580
NlaIV	GGNNCC	6 cut(s)	162, 187, 304, 705, 729, 768
NmuCI	GTSAC	1 cut(s)	466
NsiI	ATGCAT	1 cut(s)	43
NspI	RCATGY	2 cut(s)	20, 495
PaeI	GCATGC	1 cut(s)	20
PagI	TCATGA	1 cut(s)	522
PdiI	GCCGGC	1 cut(s)	732
PfeI	GAWTC	4 cut(s)	461, 629, 677, 787
PkrI	GCNGC	3 cut(s)	61, 388, 397
PleI	GAGTC	2 cut(s)	43, 118
PpsI	GAGTC	2 cut(s)	43, 118
PshAI	GACNNNNGTC	1 cut(s)	578
Psp6I	CCWGG	1 cut(s)	666
PspGI	CCWGG	1 cut(s)	666
PspN4I	GGNNCC	6 cut(s)	162, 187, 304, 705, 729, 768
PspPI	GGNCC	3 cut(s)	10, 185, 573
PstI	CTGCAG	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	752
PsuI	RGATCY	1 cut(s)	302
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
RseI	CAYNNNNRTG	1 cut(s)	485
SaqAI	TTAA	4 cut(s)	330, 618, 882, 911
SatI	GCNGC	3 cut(s)	60, 387, 396
Sau3AI	GATC	2 cut(s)	302, 796
Sau96I	GGNCC	3 cut(s)	10, 185, 573
SchI	GAGTC	2 cut(s)	43, 118
ScrFI	CCNGG	1 cut(s)	668
SduI	GDGCHC	1 cut(s)	412
SfaNI	GCATC	1 cut(s)	307
SfcI	CTRYAG	1 cut(s)	60
SinI	GGWCC	3 cut(s)	10, 185, 573
SmiMI	CAYNNNNRTG	1 cut(s)	485
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SphI	GCATGC	1 cut(s)	20
Sse9I	AATT	7 cut(s)	131, 264, 331, 390, 496, 879, 898
StyD4I	CCNGG	1 cut(s)	666
StyI	CCWWGG	3 cut(s)	306, 576, 690
TaiI	ACGT	2 cut(s)	217, 222
TaqI	TCGA	3 cut(s)	116, 195, 282
TasI	AATT	7 cut(s)	131, 264, 331, 390, 496, 879, 898
TatI	WGTACW	1 cut(s)	26
TfiI	GAWTC	4 cut(s)	461, 629, 677, 787
Tru1I	TTAA	4 cut(s)	330, 618, 882, 911
Tru9I	TTAA	4 cut(s)	330, 618, 882, 911
TscAI	CASTG	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	3 cut(s)	59, 386, 395
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	3 cut(s)	158, 246, 891
TspGWI	ACGGA	2 cut(s)	641, 857
TspRI	CASTG	1 cut(s)	417
VpaK11BI	GGWCC	3 cut(s)	10, 185, 573
XapI	RAATTY	1 cut(s)	131
XceI	RCATGY	2 cut(s)	20, 495
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XmiI	GTMKAC	1 cut(s)	68
Zsp2I	ATGCAT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.