Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001621.1

Orthogroup ID

OG0000992

Physical Location & Seq

Genomic Coordinates Forward (+)

13314 .. 16634

Gene Structure 3321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001621.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

atgtatattctattaaatcaactcttggagttgaaattctttgcacccatacttcatattgataaatttggtcgtttcttatattctgaaggtgttgatgaagatgagaatgcaggaatatgcagagcggataatcccctttatggttcttccttgattgaatatgcccttgtggagcaatggattgattttgcaacgttagagattgatgccaatattttgcgttggttcataccgcgtatcggttttgcagtctaccttcctccggctgaggaagctgcaatttcttccttgaagagagcactaactgctttgaacactcatctagcttccaacacgtacttagttgggcactctgtgacattggctgatatcattatgatatgtaatttaacactgggatttaactggttgttgacaaaaatttttacctcggaatttcctcatgatgagagatacttttggacattggctaatcagcctaattttcgcaagatactgggtgaggtgaaacaagctgaatctgttccagctgttcagtcagcaaagaagccttctcagcctaaggaacctgcaaagaaagaggccaagaaggaagtgaagaaagaaccagcaaagcctaaagtagaagaggctgctcaggaagaggaggcacccaagcccaagggaaagaatcctcttgatcttttgcctcctagcaagatgattctggatgaatggaagaggctttattcaaacacaaagaccaacttccgtgaggttgctgtcaaagagggttactccctttggttttgcgattacaaatacaacgatgaaaatacagtttcatttgtgactttgaacaaggagggcggttttctgcagcggatggatttggctcgtaaatatgcgtttgggaagatgttggtgattgggtctgttcctcctttcaaggtgaagggcttgtggctgttccgtgggcaagaggttccccagttcataattgatgaatgttatgacatggaactgtatgattggtgtaaggttgatataactgatgaggatcaagggagcgcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

352

Amino Acids

40.31

Weight (kDa)

5.41

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09640 AT1G57720 AT1G57720
fragaria_vesca	FvH4_5g28250 FvH4_5g28250 FvH4_5g32590 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560
malus_domestica	MD08G1244100.v1.1 MD15G1403200.v1.1 MD15G1438400.v1.1
prunus_persica	Prupe.1G549300_v2.0.a1 Prupe.1G549300_v2.0.a1 Prupe.1G581500_v2.0.a1 Prupe.1G581500_v2.0.a1
pyrus_communis	pycom08g21180 pycom15g36060 pycom15g38640
rosa_chinensis	RchiOBHm_Chr7g0220411 RchiOBHm_Chr7g0229581 RchiOBHm_Chr7g0229711 RchiOBHm_Chr7g0230101 RchiOBHm_Chr7g0230191
rosa_laevigata	RLG00000001508 RLG00000001510
rosa_multiflora	Rmu_sc0000693.1_g000058 Rmu_sc0000851.1_g000010 Rmu_sc0001621.1_g000005 Rmu_sc0001918.1_g000014 Rmu_sc0002666.1_g000007 Rmu_sc0002822.1_g000020 Rmu_sc0002822.1_g000031 Rmu_sc0004110.1_g000004 Rmu_ssc0000189.1_g000051
rosa_roxburghii	Rroxscaffold_3G00230290 Rroxscaffold_3G00230310 Rroxscaffold_3G00239390
rosa_rugosa	Rorug07G0193900 Rorug07G0259200 Rorug07G0259700 Rorug07G0259900 Rorug07G0260000
rosa_samantha	Rh7AG334900 Rh7AG408700 Rh7AG409300 Rh7AG409800 Rh7BG325900 Rh7BG387800 Rh7BG388100 Rh7BG388200 Rh7BG388600 Rh7CG352600 Rh7CG427700
rosa_wichuraiana	Rw0G018580 Rw0G022570 Rw7G028550 Rw7G033930 Rw7G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	580
AccB1I	GGYRCC	1 cut(s)	652
AccBSI	CCGCTC	1 cut(s)	128
AccI	GTMKAC	1 cut(s)	255
AccII	CGCG	2 cut(s)	238, 1055
AciI	CCGC	4 cut(s)	128, 236, 852, 865
AclI	AACGTT	1 cut(s)	197
AclWI	GGATC	1 cut(s)	1050
AcsI	RAATTY	4 cut(s)	35, 65, 423, 437
AcuI	CTGAAG	1 cut(s)	108
AdeI	CACNNNGTG	1 cut(s)	358
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	3 cut(s)	143, 242, 265
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	7 cut(s)	34, 161, 295, 316, 735, 841, 931
AluBI	AGCT	4 cut(s)	278, 329, 518, 533
AluI	AGCT	4 cut(s)	278, 329, 518, 533
Alw21I	GWGCWC	1 cut(s)	304
AlwI	GGATC	1 cut(s)	1050
AoxI	GGCC	1 cut(s)	585
ApeKI	GCWGC	3 cut(s)	278, 635, 862
ApoI	RAATTY	4 cut(s)	35, 65, 423, 437
Asp700I	GAANNNNTTC	1 cut(s)	525
AspLEI	GCGC	1 cut(s)	1055
AsuHPI	GGTGA	4 cut(s)	515, 520, 919, 946
AxyI	CCTNAGG	1 cut(s)	564
BaeGI	GKGCMC	1 cut(s)	354
BanI	GGYRCC	1 cut(s)	652
Bbv12I	GWGCWC	1 cut(s)	304
BbvCI	CCTCAGC	1 cut(s)	270
BbvI	GCAGC	3 cut(s)	265, 622, 874
BccI	CCATC	1 cut(s)	862
BfaI	CTAG	2 cut(s)	326, 696
BfmI	CTRYAG	1 cut(s)	860
BfuAI	ACCTGC	1 cut(s)	580
BisI	GCNGC	3 cut(s)	279, 636, 863
BlsI	GCNGC	3 cut(s)	280, 637, 864
BmiI	GGNNCC	3 cut(s)	570, 654, 969
BmrI	ACTGGG	3 cut(s)	407, 509, 967
BmsI	GCATC	1 cut(s)	199
BmuI	ACTGGG	3 cut(s)	407, 509, 967
BplI	GAGNNNNNCTC	2 cut(s)	764, 796
Bpu10I	CCTNAGC	2 cut(s)	270, 639
BsaAI	YACGTR	1 cut(s)	339
BsaBI	GATNNNNATC	1 cut(s)	1041
BsaJI	CCNNGG	3 cut(s)	432, 663, 955
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 242, 265
Bse1I	ACTGG	4 cut(s)	402, 413, 504, 973
Bse21I	CCTNAGG	1 cut(s)	564
Bse3DI	GCAATG	1 cut(s)	185
Bse8I	GATNNNNATC	1 cut(s)	1041
BseDI	CCNNGG	3 cut(s)	432, 663, 955
BseGI	GGATG	2 cut(s)	718, 873
BseJI	GATNNNNATC	1 cut(s)	1041
BseLI	CCNNNNNNNGG	3 cut(s)	143, 242, 265
BseMI	GCAATG	1 cut(s)	185
BseMII	CTCAG	3 cut(s)	261, 572, 653
BseNI	ACTGG	4 cut(s)	402, 413, 504, 973
BseRI	GAGGAG	1 cut(s)	662
BseSI	GKGCMC	1 cut(s)	354
BseXI	GCAGC	3 cut(s)	265, 622, 874
Bsh1236I	CGCG	2 cut(s)	238, 1055
BshFI	GGCC	1 cut(s)	587
BshNI	GGYRCC	1 cut(s)	652
BsiHKAI	GWGCWC	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	266
BslI	CCNNNNNNNGG	3 cut(s)	143, 242, 265
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	587
Bsp1286I	GDGCHC	2 cut(s)	304, 354
Bsp143I	GATC	2 cut(s)	682, 1042
BspACI	CCGC	4 cut(s)	128, 236, 852, 865
BspANI	GGCC	1 cut(s)	587
BspCNI	CTCAG	3 cut(s)	262, 571, 652
BspFNI	CGCG	2 cut(s)	238, 1055
BspHI	TCATGA	1 cut(s)	445
BspLI	GGNNCC	3 cut(s)	570, 654, 969
BspMAI	CTGCAG	1 cut(s)	864
BspMI	ACCTGC	1 cut(s)	580
BspPI	GGATC	1 cut(s)	1050
BspT107I	GGYRCC	1 cut(s)	652
BsrBI	CCGCTC	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	185
BsrI	ACTGG	4 cut(s)	402, 413, 504, 973
BssECI	CCNNGG	3 cut(s)	432, 663, 955
BssMI	GATC	2 cut(s)	682, 1042
BssT1I	CCWWGG	1 cut(s)	663
Bst4CI	ACNGT	2 cut(s)	823, 1008
Bst6I	CTCTTC	4 cut(s)	290, 624, 639, 716
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstBAI	YACGTR	1 cut(s)	339
BstDEI	CTNAG	5 cut(s)	270, 343, 558, 564, 639
BstDSI	CCRYGG	1 cut(s)	955
BstF5I	GGATG	2 cut(s)	718, 873
BstFNI	CGCG	2 cut(s)	238, 1055
BstHHI	GCGC	1 cut(s)	1055
BstKTI	GATC	2 cut(s)	685, 1045
BstMBI	GATC	2 cut(s)	682, 1042
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 308, 559
BstSFI	CTRYAG	1 cut(s)	860
BstSLI	GKGCMC	1 cut(s)	354
BstUI	CGCG	2 cut(s)	238, 1055
BstV1I	GCAGC	3 cut(s)	265, 622, 874
Bsu36I	CCTNAGG	1 cut(s)	564
BsuRI	GGCC	1 cut(s)	587
BtgI	CCRYGG	1 cut(s)	955
BtsCI	GGATG	2 cut(s)	718, 873
BtsIMutI	CAGTG	1 cut(s)	395
BveI	ACCTGC	1 cut(s)	580
CciI	TCATGA	1 cut(s)	445
CfoI	GCGC	1 cut(s)	1055
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	2 cut(s)	446, 1000
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	5 cut(s)	270, 343, 558, 564, 639
DpnI	GATC	2 cut(s)	684, 1044
DpnII	GATC	2 cut(s)	682, 1042
DraIII	CACNNNGTG	1 cut(s)	358
Eam1104I	CTCTTC	4 cut(s)	290, 624, 639, 716
EarI	CTCTTC	4 cut(s)	290, 624, 639, 716
Eco130I	CCWWGG	1 cut(s)	663
Eco32I	GATATC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	108
Eco81I	CCTNAGG	1 cut(s)	564
EcoRV	GATATC	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	663
ErhI	CCWWGG	1 cut(s)	663
FaeI	CATG	2 cut(s)	449, 1003
FalI	AAGNNNNNCTT	2 cut(s)	734, 766
FatI	CATG	2 cut(s)	445, 999
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	3 cut(s)	279, 636, 863
FokI	GGATG	2 cut(s)	725, 880
Fsp4HI	GCNGC	3 cut(s)	279, 636, 863
FspBI	CTAG	2 cut(s)	326, 696
GlaI	GCGC	1 cut(s)	1054
GluI	GCNGC	3 cut(s)	279, 636, 863
HaeIII	GGCC	1 cut(s)	587
HapII	CCGG	1 cut(s)	266
HhaI	GCGC	1 cut(s)	1055
Hin1II	CATG	2 cut(s)	449, 1003
Hin6I	GCGC	1 cut(s)	1053
HinP1I	GCGC	1 cut(s)	1053
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HinfI	GANTC	3 cut(s)	521, 673, 706
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	4 cut(s)	515, 520, 919, 946
Hpy166II	GTNNAC	2 cut(s)	256, 417
Hpy188I	TCNGA	2 cut(s)	88, 436
Hpy188III	TCNNGA	4 cut(s)	446, 641, 680, 710
Hpy8I	GTNNAC	2 cut(s)	256, 417
HpyAV	CCTTC	5 cut(s)	83, 269, 564, 586, 931
HpyCH4III	ACNGT	2 cut(s)	823, 1008
HpyCH4IV	ACGT	2 cut(s)	197, 338
HpyCH4V	TGCA	8 cut(s)	44, 113, 123, 194, 251, 281, 575, 862
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 308, 559
HpyF3I	CTNAG	5 cut(s)	270, 343, 558, 564, 639
HpySE526I	ACGT	2 cut(s)	197, 338
Hsp92II	CATG	2 cut(s)	449, 1003
HspAI	GCGC	1 cut(s)	1053
Kzo9I	GATC	2 cut(s)	682, 1042
LmnI	GCTCC	2 cut(s)	175, 1050
Lsp1109I	GCAGC	3 cut(s)	265, 622, 874
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	2 cut(s)	326, 696
MaeII	ACGT	2 cut(s)	197, 338
MaeIII	GTNAC	3 cut(s)	358, 776, 832
MalI	GATC	2 cut(s)	684, 1044
MbiI	CCGCTC	1 cut(s)	128
MboI	GATC	2 cut(s)	682, 1042
MboII	GAAGA	9 cut(s)	113, 141, 279, 307, 613, 641, 656, 733, 910
MhlI	GDGCHC	2 cut(s)	304, 354
MluCI	AATT	8 cut(s)	35, 65, 282, 388, 423, 437, 484, 981
MmeI	TCCRAC	1 cut(s)	357
MroXI	GAANNNNTTC	1 cut(s)	525
MseI	TTAA	3 cut(s)	14, 392, 405
MspA1I	CMGCKG	2 cut(s)	533, 865
MspI	CCGG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	115
MvnI	CGCG	2 cut(s)	238, 1055
MwoI	GCNNNNNNNGC	3 cut(s)	275, 308, 559
NdeII	GATC	2 cut(s)	682, 1042
NlaIII	CATG	2 cut(s)	449, 1003
NlaIV	GGNNCC	3 cut(s)	570, 654, 969
NmuCI	GTSAC	2 cut(s)	358, 832
PagI	TCATGA	1 cut(s)	445
PctI	GAATGC	1 cut(s)	115
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	3 cut(s)	521, 673, 706
PkrI	GCNGC	3 cut(s)	280, 637, 864
Ppu21I	YACGTR	1 cut(s)	339
Psp1406I	AACGTT	1 cut(s)	197
PspN4I	GGNNCC	3 cut(s)	570, 654, 969
PstI	CTGCAG	1 cut(s)	864
PvuII	CAGCTG	1 cut(s)	533
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SaqAI	TTAA	3 cut(s)	14, 392, 405
SatI	GCNGC	3 cut(s)	279, 636, 863
Sau3AI	GATC	2 cut(s)	682, 1042
SduI	GDGCHC	2 cut(s)	304, 354
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	860
Sse9I	AATT	8 cut(s)	35, 65, 282, 388, 423, 437, 484, 981
SsiI	CCGC	4 cut(s)	128, 236, 852, 865
SspI	AATATT	1 cut(s)	217
SspMI	CTAG	2 cut(s)	326, 696
StyI	CCWWGG	1 cut(s)	663
TaaI	ACNGT	2 cut(s)	823, 1008
TaiI	ACGT	2 cut(s)	200, 341
TasI	AATT	8 cut(s)	35, 65, 282, 388, 423, 437, 484, 981
TfiI	GAWTC	3 cut(s)	521, 673, 706
Tru1I	TTAA	3 cut(s)	14, 392, 405
Tru9I	TTAA	3 cut(s)	14, 392, 405
TscAI	CASTG	1 cut(s)	402
TseFI	GTSAC	2 cut(s)	358, 832
TseI	GCWGC	3 cut(s)	278, 635, 862
Tsp45I	GTSAC	2 cut(s)	358, 832
TspDTI	ATGAA	8 cut(s)	44, 114, 220, 729, 816, 828, 967, 1002
TspGWI	ACGGA	2 cut(s)	743, 944
TspRI	CASTG	1 cut(s)	402
XapI	RAATTY	4 cut(s)	35, 65, 423, 437
XmiI	GTMKAC	1 cut(s)	255
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	2 cut(s)	326, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.