FvH4_5g28250

Elongation factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
19429853 .. 19432819
2967 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g28250.t2

Sequence Viewer

Length: 1263 bp
ATGGCTCTGGTCTTGCATGCAGGGAGCACGAACAAAAATGCATACAAGACTCTCATTGCTGCTGAGTATACAGGTGTCAAAGTTGCACTTGCACCCAACTTTGAGATGGGCGTCTCCAACAAGACTCCTGAATTTCTCAAGATGAACCCCATTGGGAAGGTTCCTGTGCTGGAGACACCCGATGGACCCATCTTCGAGAGTAATGCCATTGCACGTTACGTTACTCGCTTGCAGGCTGACAATCCTCTTTATGGTTCATCTTCAATTGACTATGCCCATATCGAGCAATGGATTGATTTTGGATCCTTGGAGATTGATGCTAACCTTGGTAATTGGCTTAGACCAAGAATGGGAAGGGGTGTCTATCTTCCTCCAGCGGAAGAAGCGGCAATTGCTGCATTGAAGAGAGCACTGGGTGCATTGAACACATATCTTGCTTCTAGCACATACCTTGTTGGGCATTCTGTCACTCTTGCCGACATTGTTATGACATGCAATTTGTTTATGGGCTTCACCAGACTCATGACTAAGAGCTTCACTTCAGAGTTTCCTCATGTTGAGAGATACTTCTGGACAATGGTCAATCAACCAAACTTCAAAAAGGTATTGCGTGAGGTCAAGCAGACAGATTCTGTGCCTGCTGTTCAATCTGCAAAGAAGCCTGCCCCTGCCAAAGAATCTGCTAAACCCAAGGCTAAGGAGGAGCCAAAGAAAGAAGCCAAGGAGCTGGCAAAGCCAAAAGTAGAAGCTGAGGAGGAAGAGGCACCAAAGCCAAAACCCAAGAATGCTCTTGATCTGCTTCCTCCAAGTAAGATGATATTGGATGACTGGAAAAGGCTTTACTCTAACACGAAGACCAACTTCCGTGAGGTGGCAATTAAAGGATTCTGGGACATGTATGATCCTGAAGGATACTCTCTCTGGTTCTGTGATTACAAGTACAATGATGAGAATACCGTTTCCTTTGTGACACTGAACAAGGTTGGTGGATTTCTTCAGCGGATGGATCTGGCCCGCAAGTATGCTTTTGGGAAGATGCTAATTATTGGTGCAAACCCACCATACAAGGTGAAGGGCTTGTGGCTCTTCCGTGGCCCAGAAATCCCTGAATTTGTGATGCAAGAGTGCTATGACATGGAGCTCTATGAGTGGACCAAGGTTGACATCTCAGATGAAAACCAAAAGGAGCGTGTGAGTCAGATGATTGAAGACCAGGAGCCTTTTGAGGGAGAGCCTCTACTGGATGCCAAGTGCTTCAAGTGA

Protein Analysis

421

Amino Acids

47.62

Weight (kDa)

6.23

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 8 - 75 4e-14 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 14 - 75 3.9e-08 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 16 - 81 6e-07 Glutathione S-transferase, N-terminal domain
GST_C PF00043 128 - 197 1.6e-11 Glutathione S-transferase, C-terminal domain
GST_C_3 PF14497 132 - 203 3.4e-06 Glutathione S-transferase, C-terminal domain
EF1G PF00647 259 - 366 2e-40 Elongation factor 1 gamma, conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 763
AccI GTMKAC 1 cut(s) 68
AciI CCGC 4 cut(s) 377, 386, 1000, 1015
AclWI GGATC 4 cut(s) 297, 310, 896, 1014
AcsI RAATTY 2 cut(s) 131, 1109
AcuI CTGAAG 3 cut(s) 525, 927, 980
AcyI GRCGYC 1 cut(s) 111
AdeI CACNNNGTG 1 cut(s) 416
AfaI GTAC 1 cut(s) 941
AfiI CCNNNNNNNGG 4 cut(s) 251, 350, 871, 1226
AflIII ACRYGT 1 cut(s) 894
AgsI TTSAA 7 cut(s) 264, 403, 424, 598, 647, 1208, 1258
AjnI CCWGG 1 cut(s) 1212
AluBI AGCT 4 cut(s) 534, 727, 749, 1141
AluI AGCT 4 cut(s) 534, 727, 749, 1141
Alw21I GWGCWC 3 cut(s) 29, 412, 1143
Alw26I GTCTC 2 cut(s) 118, 167
AlwI GGATC 4 cut(s) 297, 310, 896, 1014
AlwNI CAGNNNCTG 1 cut(s) 632
AoxI GGCC 2 cut(s) 1011, 1093
ApeKI GCWGC 2 cut(s) 59, 395
ApoI RAATTY 2 cut(s) 131, 1109
ArsI GACNNNNNNTTYG 2 cut(s) 481, 513
AspS9I GGNCC 4 cut(s) 185, 1012, 1094, 1152
AsuHPI GGTGA 2 cut(s) 505, 1081
AvaII GGWCC 2 cut(s) 185, 1152
BamHI GGATCC 1 cut(s) 302
BanI GGYRCC 1 cut(s) 763
BanII GRGCYC 1 cut(s) 1143
BbsI GAAGAC 2 cut(s) 860, 1215
Bbv12I GWGCWC 3 cut(s) 29, 412, 1143
BbvCI CCTCAGC 1 cut(s) 750
BbvI GCAGC 2 cut(s) 46, 382
BccI CCATC 4 cut(s) 100, 176, 197, 997
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BciT130I CCWGG 1 cut(s) 1214
BciVI GTATCC 1 cut(s) 905
BcoDI GTCTC 2 cut(s) 118, 167
BfaI CTAG 1 cut(s) 441
BfuI GTATCC 1 cut(s) 905
BisI GCNGC 3 cut(s) 60, 387, 396
BlsI GCNGC 3 cut(s) 61, 388, 397
Bme1390I CCNGG 1 cut(s) 1214
Bme18I GGWCC 2 cut(s) 185, 1152
BmgT120I GGNCC 4 cut(s) 185, 1012, 1094, 1152
BmiI GGNNCC 6 cut(s) 162, 187, 304, 705, 765, 1218
BmrFI CCNGG 1 cut(s) 1214
BmrI ACTGGG 1 cut(s) 422
BmsI GCATC 4 cut(s) 307, 1026, 1107, 1234
BmuI ACTGGG 1 cut(s) 422
BoxI GACNNNNGTC 1 cut(s) 578
BpiI GAAGAC 2 cut(s) 860, 1215
BpmI CTGGAG 2 cut(s) 191, 357
Bpu10I CCTNAGC 2 cut(s) 696, 750
BpuEI CTTGAG 1 cut(s) 122
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 6 cut(s) 306, 325, 690, 720, 1090, 1155
Bsc4I CCNNNNNNNGG 4 cut(s) 251, 350, 871, 1226
Bse1I ACTGG 3 cut(s) 417, 833, 1245
Bse3DI GCAATG 3 cut(s) 54, 207, 293
BseBI CCWGG 1 cut(s) 1214
BseDI CCNNGG 6 cut(s) 306, 325, 690, 720, 1090, 1155
BseGI GGATG 3 cut(s) 829, 1008, 1249
BseLI CCNNNNNNNGG 4 cut(s) 251, 350, 871, 1226
BseMI GCAATG 3 cut(s) 54, 207, 293
BseMII CTCAG 3 cut(s) 54, 741, 1182
BseNI ACTGG 3 cut(s) 417, 833, 1245
BseRI GAGGAG 2 cut(s) 716, 767
BseXI GCAGC 2 cut(s) 46, 382
BshFI GGCC 2 cut(s) 1013, 1095
BshNI GGYRCC 1 cut(s) 763
BsiHKAI GWGCWC 3 cut(s) 29, 412, 1143
BslFI GGGAC 1 cut(s) 905
BslI CCNNNNNNNGG 4 cut(s) 251, 350, 871, 1226
BsmAI GTCTC 2 cut(s) 118, 167
BsmBI CGTCTC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 905
BsmI GAATGC 2 cut(s) 460, 790
BsnI GGCC 2 cut(s) 1013, 1095
Bsp1286I GDGCHC 3 cut(s) 29, 412, 1143
Bsp143I GATC 4 cut(s) 302, 793, 901, 1006
BspACI CCGC 4 cut(s) 377, 386, 1000, 1015
BspANI GGCC 2 cut(s) 1013, 1095
BspCNI CTCAG 3 cut(s) 55, 742, 1181
BspHI TCATGA 1 cut(s) 522
BspLI GGNNCC 6 cut(s) 162, 187, 304, 705, 765, 1218
BspPI GGATC 4 cut(s) 297, 310, 896, 1014
BspQI GCTCTTC 1 cut(s) 1091
BspT107I GGYRCC 1 cut(s) 763
BsrDI GCAATG 3 cut(s) 54, 207, 293
BsrI ACTGG 3 cut(s) 417, 833, 1245
BssECI CCNNGG 6 cut(s) 306, 325, 690, 720, 1090, 1155
BssMI GATC 4 cut(s) 302, 793, 901, 1006
BssNAI GTATAC 1 cut(s) 69
BssNI GRCGYC 1 cut(s) 111
BssT1I CCWWGG 5 cut(s) 306, 325, 690, 720, 1155
Bst1107I GTATAC 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 1214
Bst4CI ACNGT 1 cut(s) 958
Bst6I CTCTTC 3 cut(s) 398, 753, 1091
BstACI GRCGYC 1 cut(s) 111
BstAPI GCANNNNNTGC 2 cut(s) 395, 416
BstC8I GCNNGC 7 cut(s) 18, 230, 234, 639, 663, 729, 1015
BstDEI CTNAG 6 cut(s) 63, 338, 528, 696, 750, 1168
BstDSI CCRYGG 1 cut(s) 1090
BstF5I GGATG 3 cut(s) 829, 1008, 1249
BstKTI GATC 4 cut(s) 305, 796, 904, 1009
BstMAI GTCTC 2 cut(s) 118, 167
BstMBI GATC 4 cut(s) 302, 793, 901, 1006
BstMWI GCNNNNNNNGC 5 cut(s) 383, 392, 395, 416, 733
BstNI CCWGG 1 cut(s) 1214
BstNSI RCATGY 3 cut(s) 20, 495, 898
BstPAI GACNNNNGTC 1 cut(s) 578
BstSCI CCNGG 1 cut(s) 1212
BstV1I GCAGC 2 cut(s) 46, 382
BstV2I GAAGAC 2 cut(s) 860, 1215
BstX2I RGATCY 2 cut(s) 302, 1006
BstXI CCANNNNNNTGG 1 cut(s) 727
BstYI RGATCY 2 cut(s) 302, 1006
BstZ17I GTATAC 1 cut(s) 69
BsuI GTATCC 1 cut(s) 905
BsuRI GGCC 2 cut(s) 1013, 1095
BtgI CCRYGG 1 cut(s) 1090
BtsCI GGATG 3 cut(s) 829, 1008, 1249
BtsIMutI CAGTG 2 cut(s) 410, 971
Cac8I GCNNGC 7 cut(s) 18, 230, 234, 639, 663, 729, 1015
CaiI CAGNNNCTG 1 cut(s) 632
CciI TCATGA 1 cut(s) 522
Cfr13I GGNCC 4 cut(s) 185, 1012, 1094, 1152
CseI GACGC 1 cut(s) 100
Csp6I GTAC 1 cut(s) 940
CspCI CAANNNNNGTGG 2 cut(s) 967, 1002
CviAII CATG 6 cut(s) 17, 492, 523, 554, 895, 1135
CviQI GTAC 1 cut(s) 940
DdeI CTNAG 6 cut(s) 63, 338, 528, 696, 750, 1168
DpnI GATC 4 cut(s) 304, 795, 903, 1008
DpnII GATC 4 cut(s) 302, 793, 901, 1006
DraIII CACNNNGTG 1 cut(s) 416
Eam1104I CTCTTC 3 cut(s) 398, 753, 1091
EarI CTCTTC 3 cut(s) 398, 753, 1091
Ecl136II GAGCTC 1 cut(s) 1141
Eco130I CCWWGG 5 cut(s) 306, 325, 690, 720, 1155
Eco24I GRGCYC 1 cut(s) 1143
Eco47I GGWCC 2 cut(s) 185, 1152
Eco53kI GAGCTC 1 cut(s) 1141
Eco57I CTGAAG 3 cut(s) 525, 927, 980
EcoICRI GAGCTC 1 cut(s) 1141
EcoRII CCWGG 1 cut(s) 1212
EcoT14I CCWWGG 5 cut(s) 306, 325, 690, 720, 1155
EcoT22I ATGCAT 1 cut(s) 43
EcoT38I GRGCYC 1 cut(s) 1143
ErhI CCWWGG 5 cut(s) 306, 325, 690, 720, 1155
Esp3I CGTCTC 1 cut(s) 118
FaeI CATG 6 cut(s) 20, 495, 526, 557, 898, 1138
FalI AAGNNNNNCTT 4 cut(s) 72, 104, 845, 877
FaqI GGGAC 1 cut(s) 905
FatI CATG 6 cut(s) 16, 491, 522, 553, 894, 1134
FauI CCCGC 1 cut(s) 1022
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 3 cut(s) 60, 387, 396
FokI GGATG 3 cut(s) 836, 1015, 1256
FriOI GRGCYC 1 cut(s) 1143
Fsp4HI GCNGC 3 cut(s) 60, 387, 396
FspBI CTAG 1 cut(s) 441
GluI GCNGC 3 cut(s) 60, 387, 396
GsuI CTGGAG 2 cut(s) 191, 357
HaeIII GGCC 2 cut(s) 1013, 1095
HgaI GACGC 1 cut(s) 100
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 6 cut(s) 20, 495, 526, 557, 898, 1138
HincII GTYRAC 1 cut(s) 1162
HindII GTYRAC 1 cut(s) 1162
HinfI GANTC 7 cut(s) 49, 124, 519, 629, 677, 885, 1195
HphI GGTGA 2 cut(s) 505, 1081
Hpy166II GTNNAC 3 cut(s) 69, 1152, 1162
Hpy188I TCNGA 3 cut(s) 544, 1171, 1200
Hpy188III TCNNGA 7 cut(s) 128, 139, 196, 523, 571, 791, 905
Hpy8I GTNNAC 3 cut(s) 69, 1152, 1162
HpyAV CCTTC 4 cut(s) 151, 348, 902, 1066
HpyCH4III ACNGT 1 cut(s) 958
HpyCH4IV ACGT 2 cut(s) 214, 219
HpyF10VI GCNNNNNNNGC 5 cut(s) 383, 392, 395, 416, 733
HpyF3I CTNAG 6 cut(s) 63, 338, 528, 696, 750, 1168
HpySE526I ACGT 2 cut(s) 214, 219
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 6 cut(s) 20, 495, 526, 557, 898, 1138
Kzo9I GATC 4 cut(s) 302, 793, 901, 1006
LguI GCTCTTC 1 cut(s) 1091
LmnI GCTCC 6 cut(s) 24, 703, 724, 1138, 1186, 1216
Lsp1109I GCAGC 2 cut(s) 46, 382
LweI GCATC 4 cut(s) 307, 1026, 1107, 1234
MaeI CTAG 1 cut(s) 441
MaeII ACGT 2 cut(s) 214, 219
MaeIII GTNAC 4 cut(s) 215, 220, 466, 967
MalI GATC 4 cut(s) 304, 795, 903, 1008
MboI GATC 4 cut(s) 302, 793, 901, 1006
MfeI CAATTG 2 cut(s) 264, 390
MflI RGATCY 2 cut(s) 302, 1006
MhlI GDGCHC 3 cut(s) 29, 412, 1143
MluCI AATT 8 cut(s) 131, 264, 331, 390, 496, 876, 1041, 1109
MlyI GAGTC 4 cut(s) 43, 118, 513, 1204
MmeI TCCRAC 1 cut(s) 141
Mph1103I ATGCAT 1 cut(s) 43
MseI TTAA 1 cut(s) 879
MslI CAYNNNNRTG 1 cut(s) 485
MspA1I CMGCKG 2 cut(s) 377, 1000
MspR9I CCNGG 1 cut(s) 1214
MunI CAATTG 2 cut(s) 264, 390
Mva1269I GAATGC 2 cut(s) 460, 790
MvaI CCWGG 1 cut(s) 1214
MwoI GCNNNNNNNGC 5 cut(s) 383, 392, 395, 416, 733
NdeII GATC 4 cut(s) 302, 793, 901, 1006
NlaIII CATG 6 cut(s) 20, 495, 526, 557, 898, 1138
NlaIV GGNNCC 6 cut(s) 162, 187, 304, 705, 765, 1218
NmuCI GTSAC 2 cut(s) 466, 967
NsiI ATGCAT 1 cut(s) 43
NspI RCATGY 3 cut(s) 20, 495, 898
PaeI GCATGC 1 cut(s) 20
PagI TCATGA 1 cut(s) 522
PciI ACATGT 1 cut(s) 894
PciSI GCTCTTC 1 cut(s) 1091
PctI GAATGC 2 cut(s) 460, 790
PfeI GAWTC 3 cut(s) 629, 677, 885
PkrI GCNGC 3 cut(s) 61, 388, 397
PleI GAGTC 4 cut(s) 43, 118, 513, 1203
PpsI GAGTC 4 cut(s) 43, 118, 513, 1203
PscI ACATGT 1 cut(s) 894
PshAI GACNNNNGTC 1 cut(s) 578
Psp124BI GAGCTC 1 cut(s) 1143
Psp6I CCWGG 1 cut(s) 1212
PspGI CCWGG 1 cut(s) 1212
PspN4I GGNNCC 6 cut(s) 162, 187, 304, 705, 765, 1218
PspPI GGNCC 4 cut(s) 185, 1012, 1094, 1152
PstNI CAGNNNCTG 1 cut(s) 632
PsuI RGATCY 2 cut(s) 302, 1006
RsaI GTAC 1 cut(s) 941
RsaNI GTAC 1 cut(s) 940
RseI CAYNNNNRTG 1 cut(s) 485
SacI GAGCTC 1 cut(s) 1143
SapI GCTCTTC 1 cut(s) 1091
SaqAI TTAA 1 cut(s) 879
SatI GCNGC 3 cut(s) 60, 387, 396
Sau3AI GATC 4 cut(s) 302, 793, 901, 1006
Sau96I GGNCC 4 cut(s) 185, 1012, 1094, 1152
SchI GAGTC 4 cut(s) 43, 118, 513, 1204
ScrFI CCNGG 1 cut(s) 1214
SduI GDGCHC 3 cut(s) 29, 412, 1143
SfaNI GCATC 4 cut(s) 307, 1026, 1107, 1234
SinI GGWCC 2 cut(s) 185, 1152
SmiMI CAYNNNNRTG 1 cut(s) 485
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SphI GCATGC 1 cut(s) 20
Sse9I AATT 8 cut(s) 131, 264, 331, 390, 496, 876, 1041, 1109
SsiI CCGC 4 cut(s) 377, 386, 1000, 1015
SspMI CTAG 1 cut(s) 441
SstI GAGCTC 1 cut(s) 1143
StyD4I CCNGG 1 cut(s) 1212
StyI CCWWGG 5 cut(s) 306, 325, 690, 720, 1155
TaaI ACNGT 1 cut(s) 958
TaiI ACGT 2 cut(s) 217, 222
TaqI TCGA 2 cut(s) 195, 282
TasI AATT 8 cut(s) 131, 264, 331, 390, 496, 876, 1041, 1109
TatI WGTACW 1 cut(s) 939
TauI GCSGC 1 cut(s) 389
TfiI GAWTC 3 cut(s) 629, 677, 885
Tru1I TTAA 1 cut(s) 879
Tru9I TTAA 1 cut(s) 879
TscAI CASTG 2 cut(s) 417, 978
TseFI GTSAC 2 cut(s) 466, 967
TseI GCWGC 2 cut(s) 59, 395
Tsp45I GTSAC 2 cut(s) 466, 967
TspDTI ATGAA 3 cut(s) 158, 246, 1188
TspGWI ACGGA 2 cut(s) 854, 1079
TspRI CASTG 2 cut(s) 417, 978
VpaK11BI GGWCC 2 cut(s) 185, 1152
XapI RAATTY 2 cut(s) 131, 1109
XceI RCATGY 3 cut(s) 20, 495, 898
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XmiI GTMKAC 1 cut(s) 68
XspI CTAG 1 cut(s) 441
Zsp2I ATGCAT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.