Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000992

Physical Location & Seq

Genomic Coordinates Forward (+)

54722515 .. 54723106

Gene Structure 592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG409800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTTGCGATGGTTGAAACAGCGTATGGGTTATGCTGTTTACCTTCCTCTGGATGAGGAAGCAGCAATTTCTTCCTTGAAGAGAGCACTAACTGCTTTGAACATTCATCTTGCTTCCAACACGTACCTGGTTGGGCATTCTATCACGTTGGCTGAAATCATTATGACATGTAATCTGAAGCCGGGATCTAGTCGGTTATTAACAAAAAGTTTTACATCTGAATTTCCTCATGTTGAGAGATACTTTTGGACATTGGTTAATCTTCCTTATTTTCGCAAGCTATTGGGGGAGGTGAAACAAGCAGAATCTATTCCAGCTGTTCAGTTAGTGATGAAGCCTTCACAGCCTAAGGAATCTGCAGAAACAAAGGTCAAGGTTCAGACGAATAAAGAGGCCAAGAAAGAACCAACAGAACCTAAAGTAGAAGTCTGCTCAGGAAGAGGAGGCACCCAAGCCCAAGGCAAAGAATCCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

158

Amino Acids

17.66

Weight (kDa)

9.46

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_C	PF00043	23 - 89	5.4e-07	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09640 AT1G57720 AT1G57720
fragaria_vesca	FvH4_5g28250 FvH4_5g28250 FvH4_5g32590 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560
malus_domestica	MD08G1244100.v1.1 MD15G1403200.v1.1 MD15G1438400.v1.1
prunus_persica	Prupe.1G549300_v2.0.a1 Prupe.1G549300_v2.0.a1 Prupe.1G581500_v2.0.a1 Prupe.1G581500_v2.0.a1
pyrus_communis	pycom08g21180 pycom15g36060 pycom15g38640
rosa_chinensis	RchiOBHm_Chr7g0220411 RchiOBHm_Chr7g0229581 RchiOBHm_Chr7g0229711 RchiOBHm_Chr7g0230101 RchiOBHm_Chr7g0230191
rosa_laevigata	RLG00000001508 RLG00000001510
rosa_multiflora	Rmu_sc0000693.1_g000058 Rmu_sc0000851.1_g000010 Rmu_sc0001621.1_g000005 Rmu_sc0001918.1_g000014 Rmu_sc0002666.1_g000007 Rmu_sc0002822.1_g000020 Rmu_sc0002822.1_g000031 Rmu_sc0004110.1_g000004 Rmu_ssc0000189.1_g000051
rosa_roxburghii	Rroxscaffold_3G00230290 Rroxscaffold_3G00230310 Rroxscaffold_3G00239390
rosa_rugosa	Rorug07G0193900 Rorug07G0259200 Rorug07G0259700 Rorug07G0259900 Rorug07G0260000
rosa_samantha	Rh7AG334900 Rh7AG408700 Rh7AG409300 Rh7AG409800 Rh7BG325900 Rh7BG387800 Rh7BG388100 Rh7BG388200 Rh7BG388600 Rh7CG352600 Rh7CG427700
rosa_wichuraiana	Rw0G018580 Rw0G022570 Rw7G028550 Rw7G033930 Rw7G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	446
AclWI	GGATC	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	221
AcuI	CTGAAG	1 cut(s)	197
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	49
AflIII	ACRYGT	2 cut(s)	120, 167
AgsI	TTSAA	3 cut(s)	16, 79, 100
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	2 cut(s)	280, 317
AluI	AGCT	2 cut(s)	280, 317
Alw21I	GWGCWC	1 cut(s)	88
AlwI	GGATC	1 cut(s)	193
AoxI	GGCC	1 cut(s)	393
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	221
Asp700I	GAANNNNTTC	1 cut(s)	309
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	304
AxyI	CCTNAGG	1 cut(s)	348
BanI	GGYRCC	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	1 cut(s)	3
BciT130I	CCWGG	1 cut(s)	128
BcnI	CCSGG	1 cut(s)	183
BfaI	CTAG	1 cut(s)	189
BfmI	CTRYAG	1 cut(s)	357
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	2 cut(s)	128, 183
BmiI	GGNNCC	1 cut(s)	448
BmrFI	CCNGG	2 cut(s)	128, 183
Bpu10I	CCTNAGC	1 cut(s)	433
BpuMI	CCSGG	1 cut(s)	183
BsaAI	YACGTR	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	457
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse21I	CCTNAGG	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	457
BseGI	GGATG	1 cut(s)	58
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	447
BseRI	GAGGAG	1 cut(s)	456
BseXI	GCAGC	1 cut(s)	74
BshFI	GGCC	1 cut(s)	395
BshNI	GGYRCC	1 cut(s)	446
BsiHKAI	GWGCWC	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	185
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	1 cut(s)	446
BspLI	GGNNCC	1 cut(s)	448
BspMAI	CTGCAG	1 cut(s)	361
BspPI	GGATC	1 cut(s)	193
BspT107I	GGYRCC	1 cut(s)	446
BssECI	CCNNGG	1 cut(s)	457
BssMI	GATC	1 cut(s)	185
BssT1I	CCWWGG	1 cut(s)	457
Bst2UI	CCWGG	1 cut(s)	128
Bst6I	CTCTTC	2 cut(s)	74, 433
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstBAI	YACGTR	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	278
BstDEI	CTNAG	2 cut(s)	348, 433
BstF5I	GGATG	1 cut(s)	58
BstKTI	GATC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	185
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 343
BstNI	CCWGG	1 cut(s)	128
BstNSI	RCATGY	1 cut(s)	171
BstSCI	CCNGG	2 cut(s)	126, 181
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
Bsu36I	CCTNAGG	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	395
BtgZI	GCGATG	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	58
Cac8I	GCNNGC	1 cut(s)	278
CsiI	ACCWGGT	1 cut(s)	126
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	2 cut(s)	168, 230
CviJI	RGCY	8 cut(s)	152, 181, 280, 317, 337, 346, 395, 455
CviKI_1	RGCY	8 cut(s)	152, 181, 280, 317, 337, 346, 395, 455
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	2 cut(s)	348, 433
DpnI	GATC	1 cut(s)	187
DpnII	GATC	1 cut(s)	185
Eam1104I	CTCTTC	2 cut(s)	74, 433
EarI	CTCTTC	2 cut(s)	74, 433
Eco130I	CCWWGG	1 cut(s)	457
Eco57I	CTGAAG	1 cut(s)	197
Eco81I	CCTNAGG	1 cut(s)	348
EcoRII	CCWGG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	457
ErhI	CCWWGG	1 cut(s)	457
FaeI	CATG	2 cut(s)	171, 233
FaiI	YATR	5 cut(s)	26, 33, 164, 169, 231
FatI	CATG	2 cut(s)	167, 229
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	395
HapII	CCGG	1 cut(s)	182
Hin1II	CATG	2 cut(s)	171, 233
HinfI	GANTC	3 cut(s)	305, 353, 467
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	3 cut(s)	177, 220, 381
Hpy188III	TCNNGA	3 cut(s)	50, 435, 474
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	53, 348
HpyCH4IV	ACGT	2 cut(s)	122, 146
HpyCH4V	TGCA	1 cut(s)	359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 343
HpyF3I	CTNAG	2 cut(s)	348, 433
HpySE526I	ACGT	2 cut(s)	122, 146
Hsp92II	CATG	2 cut(s)	171, 233
Kzo9I	GATC	1 cut(s)	185
LpnPI	CCDG	6 cut(s)	35, 113, 140, 195, 327, 420
Lsp1109I	GCAGC	1 cut(s)	74
MabI	ACCWGGT	1 cut(s)	126
MaeI	CTAG	1 cut(s)	189
MaeII	ACGT	2 cut(s)	122, 146
MalI	GATC	1 cut(s)	187
MboI	GATC	1 cut(s)	185
MboII	GAAGA	4 cut(s)	63, 91, 254, 450
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	2 cut(s)	66, 221
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	7 cut(s)	49, 57, 237, 283, 385, 434, 437
MroXI	GAANNNNTTC	1 cut(s)	309
MseI	TTAA	2 cut(s)	200, 258
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	2 cut(s)	128, 183
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	92, 343
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	1 cut(s)	185
NlaIII	CATG	2 cut(s)	171, 233
NlaIV	GGNNCC	1 cut(s)	448
NspI	RCATGY	1 cut(s)	171
PciI	ACATGT	1 cut(s)	167
PctI	GAATGC	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	3 cut(s)	305, 353, 467
PkrI	GCNGC	1 cut(s)	64
Ppu21I	YACGTR	1 cut(s)	123
PscI	ACATGT	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	448
PstI	CTGCAG	1 cut(s)	361
PsuI	RGATCY	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	317
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SaqAI	TTAA	2 cut(s)	200, 258
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	1 cut(s)	185
ScrFI	CCNGG	2 cut(s)	128, 183
SduI	GDGCHC	1 cut(s)	88
SexAI	ACCWGGT	1 cut(s)	126
SfcI	CTRYAG	1 cut(s)	357
Sse9I	AATT	2 cut(s)	66, 221
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	2 cut(s)	126, 181
StyI	CCWWGG	1 cut(s)	457
TaiI	ACGT	2 cut(s)	125, 149
TasI	AATT	2 cut(s)	66, 221
TfiI	GAWTC	3 cut(s)	305, 353, 467
Tru1I	TTAA	2 cut(s)	200, 258
Tru9I	TTAA	2 cut(s)	200, 258
TseI	GCWGC	1 cut(s)	62
TspDTI	ATGAA	2 cut(s)	95, 347
XapI	RAATTY	1 cut(s)	221
XceI	RCATGY	1 cut(s)	171
XcmI	CCANNNNNNNNNTGG	1 cut(s)	124
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.