Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000992

Physical Location & Seq

Genomic Coordinates Reverse (-)

53240680 .. 53242134

Gene Structure 1455 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20579

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCACGCGCTGTTAATCCCCGTTCCTGTGTTGGAAACGCCGGACGGTCCTGTTTTTGAGAGCAATGCCATTGCGCGATATGTTACTCGTTTGAAGGTGGATAATCCCCTTTATGGTTCTTCCTTGATTGAATATGTCCTTGTGGAGCAATGGATTGATTTTACAACGTTAGAGATTGATGCCAATATTTTGTGTTGGTTCATACCGCATATCGGTTTTGCAGTCTACCTTCCTCCGGCTGAGGAAGCTGCAATTTCTTCCTTGAAGAGAGCACTAACTGCTTTGAACACTCATCTTGCTTCCAACATGTACTTAATTGGGCACTCTGTGACATTGGCTGATATCATTATGATATGTAATTTAACACTGGGTTTTAACCGGTTGTTGACAAAAAGTTTTACCTCAGAATTTCCTCGTGTTGAGAGATACTTTTGGACATTGGTTAATCAGCCTAATTTTCACAAGATACTGGGTGAGGTGAAACAAGCTGAATCTGTTCCAGCTGTTCAGTCAAATAAGCCTTCACAGCCTAAGGAACCTGCAAAGAAAGAGGCCAAGAAGGAAGTGAAGAAAGAGCCAGCAAAGCCTAAAGTAGAAGAGGCTGCTCAGGAAGAGGAGGCACCCAAGCCCAAGGCAAAGAATCCTCTTGATCTTTTGCCTCCTAGCAAGATGATTCTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

227

Amino Acids

25.43

Weight (kDa)

6.24

Isoelectric Point (pI)

51.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_C	PF00043	68 - 151	1.2e-08	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09640 AT1G57720 AT1G57720
fragaria_vesca	FvH4_5g28250 FvH4_5g28250 FvH4_5g32590 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560
malus_domestica	MD08G1244100.v1.1 MD15G1403200.v1.1 MD15G1438400.v1.1
prunus_persica	Prupe.1G549300_v2.0.a1 Prupe.1G549300_v2.0.a1 Prupe.1G581500_v2.0.a1 Prupe.1G581500_v2.0.a1
pyrus_communis	pycom08g21180 pycom15g36060 pycom15g38640
rosa_chinensis	RchiOBHm_Chr7g0220411 RchiOBHm_Chr7g0229581 RchiOBHm_Chr7g0229711 RchiOBHm_Chr7g0230101 RchiOBHm_Chr7g0230191
rosa_laevigata	RLG00000001508 RLG00000001510
rosa_multiflora	Rmu_sc0000693.1_g000058 Rmu_sc0000851.1_g000010 Rmu_sc0001621.1_g000005 Rmu_sc0001918.1_g000014 Rmu_sc0002666.1_g000007 Rmu_sc0002822.1_g000020 Rmu_sc0002822.1_g000031 Rmu_sc0004110.1_g000004 Rmu_ssc0000189.1_g000051
rosa_roxburghii	Rroxscaffold_3G00230290 Rroxscaffold_3G00230310 Rroxscaffold_3G00239390
rosa_rugosa	Rorug07G0193900 Rorug07G0259200 Rorug07G0259700 Rorug07G0259900 Rorug07G0260000
rosa_samantha	Rh7AG334900 Rh7AG408700 Rh7AG409300 Rh7AG409800 Rh7BG325900 Rh7BG387800 Rh7BG388100 Rh7BG388200 Rh7BG388600 Rh7CG352600 Rh7CG427700
rosa_wichuraiana	Rw0G018580 Rw0G022570 Rw7G028550 Rw7G033930 Rw7G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	547
AccB1I	GGYRCC	1 cut(s)	619
AccI	GTMKAC	1 cut(s)	225
AccII	CGCG	2 cut(s)	8, 76
AciI	CCGC	1 cut(s)	206
AclI	AACGTT	1 cut(s)	167
AcsI	RAATTY	1 cut(s)	407
AdeI	CACNNNGTG	1 cut(s)	328
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	3 cut(s)	113, 212, 235
AflIII	ACRYGT	1 cut(s)	306
AgeI	ACCGGT	1 cut(s)	378
AgsI	TTSAA	4 cut(s)	94, 131, 265, 286
AluBI	AGCT	3 cut(s)	248, 488, 503
AluI	AGCT	3 cut(s)	248, 488, 503
Alw21I	GWGCWC	1 cut(s)	274
AoxI	GGCC	1 cut(s)	552
ApeKI	GCWGC	2 cut(s)	248, 602
ApoI	RAATTY	1 cut(s)	407
AsiGI	ACCGGT	1 cut(s)	378
Asp700I	GAANNNNTTC	1 cut(s)	495
AspLEI	GCGC	2 cut(s)	10, 76
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	485, 490
AvaII	GGWCC	1 cut(s)	47
AxyI	CCTNAGG	1 cut(s)	531
BaeGI	GKGCMC	1 cut(s)	324
BanI	GGYRCC	1 cut(s)	619
BauI	CACGAG	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	274
BbvCI	CCTCAGC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	235, 589
BfaI	CTAG	1 cut(s)	663
BfuAI	ACCTGC	1 cut(s)	547
BisI	GCNGC	2 cut(s)	249, 603
BlsI	GCNGC	2 cut(s)	250, 604
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	2 cut(s)	537, 621
BmrI	ACTGGG	2 cut(s)	377, 479
BmsI	GCATC	1 cut(s)	169
BmuI	ACTGGG	2 cut(s)	377, 479
Bpu10I	CCTNAGC	2 cut(s)	240, 606
BsaJI	CCNNGG	1 cut(s)	630
BsaWI	WCCGGW	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 212, 235
Bse118I	RCCGGY	1 cut(s)	378
Bse1I	ACTGG	2 cut(s)	372, 474
Bse21I	CCTNAGG	1 cut(s)	531
Bse3DI	GCAATG	3 cut(s)	69, 70, 155
BseDI	CCNNGG	1 cut(s)	630
BseLI	CCNNNNNNNGG	3 cut(s)	113, 212, 235
BseMI	GCAATG	3 cut(s)	69, 70, 155
BseMII	CTCAG	3 cut(s)	231, 417, 620
BseNI	ACTGG	2 cut(s)	372, 474
BseRI	GAGGAG	1 cut(s)	629
BseSI	GKGCMC	1 cut(s)	324
BseXI	GCAGC	2 cut(s)	235, 589
Bsh1236I	CGCG	2 cut(s)	8, 76
BshFI	GGCC	1 cut(s)	554
BshNI	GGYRCC	1 cut(s)	619
BshTI	ACCGGT	1 cut(s)	378
BsiHKAI	GWGCWC	1 cut(s)	274
BsiSI	CCGG	3 cut(s)	41, 236, 379
BslI	CCNNNNNNNGG	3 cut(s)	113, 212, 235
BsnI	GGCC	1 cut(s)	554
Bsp1286I	GDGCHC	2 cut(s)	274, 324
Bsp143I	GATC	1 cut(s)	649
BspACI	CCGC	1 cut(s)	206
BspANI	GGCC	1 cut(s)	554
BspCNI	CTCAG	3 cut(s)	232, 416, 619
BspFNI	CGCG	2 cut(s)	8, 76
BspLI	GGNNCC	2 cut(s)	537, 621
BspMI	ACCTGC	1 cut(s)	547
BspT107I	GGYRCC	1 cut(s)	619
BsrDI	GCAATG	3 cut(s)	69, 70, 155
BsrFI	RCCGGY	1 cut(s)	378
BsrI	ACTGG	2 cut(s)	372, 474
BssAI	RCCGGY	1 cut(s)	378
BssECI	CCNNGG	1 cut(s)	630
BssMI	GATC	1 cut(s)	649
BssSI	CACGAG	1 cut(s)	414
BssT1I	CCWWGG	1 cut(s)	630
Bst2BI	CACGAG	1 cut(s)	414
Bst4CI	ACNGT	1 cut(s)	47
Bst6I	CTCTTC	3 cut(s)	260, 591, 606
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	6, 579
BstDEI	CTNAG	4 cut(s)	240, 403, 531, 606
BstFNI	CGCG	2 cut(s)	8, 76
BstHHI	GCGC	2 cut(s)	10, 76
BstKTI	GATC	1 cut(s)	652
BstMBI	GATC	1 cut(s)	649
BstMWI	GCNNNNNNNGC	4 cut(s)	245, 278, 526, 583
BstNSI	RCATGY	1 cut(s)	310
BstSLI	GKGCMC	1 cut(s)	324
BstUI	CGCG	2 cut(s)	8, 76
BstV1I	GCAGC	2 cut(s)	235, 589
Bsu36I	CCTNAGG	1 cut(s)	531
BsuRI	GGCC	1 cut(s)	554
BtsIMutI	CAGTG	1 cut(s)	365
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	2 cut(s)	6, 579
CfoI	GCGC	2 cut(s)	10, 76
Cfr10I	RCCGGY	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	310
CspAI	ACCGGT	1 cut(s)	378
CviAII	CATG	1 cut(s)	307
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	4 cut(s)	240, 403, 531, 606
DpnI	GATC	1 cut(s)	651
DpnII	GATC	1 cut(s)	649
DraIII	CACNNNGTG	1 cut(s)	328
Eam1104I	CTCTTC	3 cut(s)	260, 591, 606
EarI	CTCTTC	3 cut(s)	260, 591, 606
Eco130I	CCWWGG	1 cut(s)	630
Eco32I	GATATC	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	47
Eco81I	CCTNAGG	1 cut(s)	531
EcoRV	GATATC	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	630
ErhI	CCWWGG	1 cut(s)	630
FaeI	CATG	1 cut(s)	310
FaiI	YATR	8 cut(s)	81, 114, 135, 203, 210, 308, 350, 355
FatI	CATG	1 cut(s)	306
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	2 cut(s)	249, 603
Fsp4HI	GCNGC	2 cut(s)	249, 603
FspBI	CTAG	1 cut(s)	663
GlaI	GCGC	2 cut(s)	9, 75
GluI	GCNGC	2 cut(s)	249, 603
HaeIII	GGCC	1 cut(s)	554
HapII	CCGG	3 cut(s)	41, 236, 379
HhaI	GCGC	2 cut(s)	10, 76
Hin1II	CATG	1 cut(s)	310
Hin6I	GCGC	2 cut(s)	8, 74
HinP1I	GCGC	2 cut(s)	8, 74
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HinfI	GANTC	3 cut(s)	491, 640, 673
HpaII	CCGG	3 cut(s)	41, 236, 379
HphI	GGTGA	2 cut(s)	485, 490
Hpy166II	GTNNAC	2 cut(s)	226, 387
Hpy188I	TCNGA	1 cut(s)	406
Hpy188III	TCNNGA	3 cut(s)	608, 647, 677
Hpy8I	GTNNAC	2 cut(s)	226, 387
HpyAV	CCTTC	4 cut(s)	88, 239, 531, 553
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	4 cut(s)	4, 221, 251, 542
HpyF10VI	GCNNNNNNNGC	4 cut(s)	245, 278, 526, 583
HpyF3I	CTNAG	4 cut(s)	240, 403, 531, 606
HpySE526I	ACGT	1 cut(s)	167
Hsp92II	CATG	1 cut(s)	310
HspAI	GCGC	2 cut(s)	8, 74
Kzo9I	GATC	1 cut(s)	649
LmnI	GCTCC	1 cut(s)	145
Lsp1109I	GCAGC	2 cut(s)	235, 589
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	663
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	2 cut(s)	82, 328
MalI	GATC	1 cut(s)	651
MboI	GATC	1 cut(s)	649
MboII	GAAGA	6 cut(s)	111, 249, 277, 580, 608, 623
MhlI	GDGCHC	2 cut(s)	274, 324
MluCI	AATT	5 cut(s)	252, 315, 358, 407, 454
MmeI	TCCRAC	2 cut(s)	12, 327
MroXI	GAANNNNTTC	1 cut(s)	495
MseI	TTAA	6 cut(s)	14, 314, 362, 375, 444, 682
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	3 cut(s)	41, 236, 379
MvnI	CGCG	2 cut(s)	8, 76
MwoI	GCNNNNNNNGC	4 cut(s)	245, 278, 526, 583
NdeII	GATC	1 cut(s)	649
NlaIII	CATG	1 cut(s)	310
NlaIV	GGNNCC	2 cut(s)	537, 621
NmuCI	GTSAC	1 cut(s)	328
NspI	RCATGY	1 cut(s)	310
PciI	ACATGT	1 cut(s)	306
PdmI	GAANNNNTTC	1 cut(s)	495
PfeI	GAWTC	3 cut(s)	491, 640, 673
PinAI	ACCGGT	1 cut(s)	378
PkrI	GCNGC	2 cut(s)	250, 604
PscI	ACATGT	1 cut(s)	306
Psp1406I	AACGTT	1 cut(s)	167
PspN4I	GGNNCC	2 cut(s)	537, 621
PspPI	GGNCC	1 cut(s)	47
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SaqAI	TTAA	6 cut(s)	14, 314, 362, 375, 444, 682
SatI	GCNGC	2 cut(s)	249, 603
Sau3AI	GATC	1 cut(s)	649
Sau96I	GGNCC	1 cut(s)	47
SduI	GDGCHC	2 cut(s)	274, 324
SetI	ASST	9 cut(s)	99, 170, 231, 250, 404, 480, 490, 505, 541
SfaNI	GCATC	1 cut(s)	169
SinI	GGWCC	1 cut(s)	47
Sse9I	AATT	5 cut(s)	252, 315, 358, 407, 454
SsiI	CCGC	1 cut(s)	206
SspI	AATATT	1 cut(s)	187
SspMI	CTAG	1 cut(s)	663
StyI	CCWWGG	1 cut(s)	630
TaaI	ACNGT	1 cut(s)	47
TaiI	ACGT	1 cut(s)	170
TasI	AATT	5 cut(s)	252, 315, 358, 407, 454
TatI	WGTACW	1 cut(s)	309
TfiI	GAWTC	3 cut(s)	491, 640, 673
Tru1I	TTAA	6 cut(s)	14, 314, 362, 375, 444, 682
Tru9I	TTAA	6 cut(s)	14, 314, 362, 375, 444, 682
TscAI	CASTG	1 cut(s)	372
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	2 cut(s)	248, 602
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	1 cut(s)	190
TspRI	CASTG	1 cut(s)	372
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	1 cut(s)	407
XceI	RCATGY	1 cut(s)	310
XmiI	GTMKAC	1 cut(s)	225
XmnI	GAANNNNTTC	1 cut(s)	495
XspI	CTAG	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.