Rh7BG388600

Elongation factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Reverse (-)
42385067 .. 42472409
87343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG388600.1

Sequence Viewer

Length: 1257 bp
ATGGCTTTGGTGCTGCACGCTGGGAACACCAATAAGAATGGTTACAAGGCACTCATTGCTGCCGAGTTCAGCGGTGTCAATGTTGAGCTGGTAAAGGATTTCGAGATGGGTGTGTCGAACAAGACTCCTGAGTTTCTCAAAATGAATCCCATTGGGAAGGTTCCTGTGTTGGAAACGCCTGACGGTCCTGTTTTTGAGAGCAATGCCATTGCGCGATATGTTACTCGTTTGAAGGCGGATAATCCCCTTTATGGTTCTTCCTTGATTGAATATGCCCTTGTGGAGCAATGGATTGATTTTGCAACGTTAGAGATTGATGCCAATATTTTGCGTTGGTTCATACCACGTATCGGTTTTGCAGTCTACCTTCCTCCGGCTGAGGAAGCTGCAATTTCTTCCTTGAAGAGAGCACTAACTGCTTTGAACACTTATCTTGCTTCCAACACGTACTTAGTTGGGCACTCTGTGACATTGGCTGATATCATTATGATATGTAATTTAACACTGGGTTTTAACCGGTTGTTGACAAAAAGTTTTACCTCAGAATTTTCTCATGTTGAGAGATACTTTTGGACATTGGTTAATCAGCCTAATTTTCGCAAGATACTGGGTGAGGTGAAACAAGCTGAATCTGTTCCAGCTGTTCAGTCAAAGAAGCCTTCACAGCCTAAGGAACCTGCAAAGAAAGAGGCCAAGAAGGAAGTGAAGAAAGAACCAGCAAAGCCTAAAGTAGAAGAGGCTGCTCAGGAAGAGGAGGCGCCCAAGCCCAAGGCAAAGAATCCTCTTGATCTTTTGCCTCCTAGCAAGATGATTCTGGATGAATGGAAAAGGCTTTATTCAAACACAAAGACCAACTTCCGTGAGGTTGCTGTCAAAGGCTTCTGGGACATGTATGATCCAGAGGGTTACTCCCTTTGGTTTTGCGATTACAAATACAACGATGAAAATACAGTTTCATTTGTGACTTTGAACAAGGTGGGCGGTTTTCTGCAGCGGATGGATTTGGCTCGTAAATATGCGTTTGGGAAGATGTTGGTGATTGGGTCTGATCCTCCTTTCAAGGTGAAGGGCTTGTGGCTGTTCCGTGGGCAAGAGGTTCCCCAGTTCATAATTGATGAATGTTATGACATGGAACTGTATGATTGGTGTAAGGTTGATATAACTGATGAGGATCAAAAGGAGCGCGTGAACCAGATGATTGAAGATCACGAGCCTTTTGAGGGGGAGGCTTTGTTGGATGCCAAATGCTTCAAGTGA

Protein Analysis

418

Amino Acids

47.63

Weight (kDa)

5.58

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 10 - 75 6.5e-14 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 16 - 75 3.4e-08 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 16 - 80 9e-07 Glutathione S-transferase, N-terminal domain
GST_C PF00043 128 - 197 4.5e-09 Glutathione S-transferase, C-terminal domain
EF1G PF00647 257 - 365 2.2e-42 Elongation factor 1 gamma, conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 685
AccB1I GGYRCC 1 cut(s) 757
AccI GTMKAC 1 cut(s) 363
AccII CGCG 2 cut(s) 214, 1185
AciI CCGC 4 cut(s) 72, 236, 981, 994
AclI AACGTT 1 cut(s) 305
AclWI GGATC 3 cut(s) 890, 1043, 1179
AcsI RAATTY 1 cut(s) 545
AcyI GRCGYC 1 cut(s) 758
AdeI CACNNNGTG 1 cut(s) 466
AfaI GTAC 1 cut(s) 449
AfiI CCNNNNNNNGG 4 cut(s) 251, 350, 373, 1220
AflIII ACRYGT 2 cut(s) 444, 888
AgeI ACCGGT 1 cut(s) 516
AgsI TTSAA 9 cut(s) 232, 269, 403, 424, 840, 970, 1060, 1202, 1252
AluBI AGCT 4 cut(s) 88, 386, 626, 641
AluI AGCT 4 cut(s) 88, 386, 626, 641
Alw21I GWGCWC 1 cut(s) 412
AlwI GGATC 3 cut(s) 890, 1043, 1179
AoxI GGCC 1 cut(s) 690
ApeKI GCWGC 5 cut(s) 13, 59, 386, 740, 991
ApoI RAATTY 1 cut(s) 545
AsiGI ACCGGT 1 cut(s) 516
Asp700I GAANNNNTTC 1 cut(s) 633
AspLEI GCGC 3 cut(s) 214, 760, 1185
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 4 cut(s) 623, 628, 1048, 1075
AvaII GGWCC 1 cut(s) 185
AxyI CCTNAGG 1 cut(s) 669
BaeGI GKGCMC 1 cut(s) 462
BanI GGYRCC 1 cut(s) 757
BauI CACGAG 1 cut(s) 1208
Bbv12I GWGCWC 1 cut(s) 412
BbvCI CCTCAGC 1 cut(s) 378
BbvI GCAGC 4 cut(s) 46, 373, 727, 1003
BccI CCATC 2 cut(s) 100, 991
BfaI CTAG 1 cut(s) 801
BfmI CTRYAG 1 cut(s) 989
BfoI RGCGCY 1 cut(s) 761
BfuAI ACCTGC 1 cut(s) 685
BisI GCNGC 5 cut(s) 14, 60, 387, 741, 992
BlsI GCNGC 5 cut(s) 15, 61, 388, 742, 993
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 4 cut(s) 162, 675, 759, 1098
BmrI ACTGGG 3 cut(s) 515, 617, 1096
BmsI GCATC 2 cut(s) 307, 1228
BmuI ACTGGG 3 cut(s) 515, 617, 1096
BplI GAGNNNNNCTC 2 cut(s) 893, 925
Bpu10I CCTNAGC 2 cut(s) 378, 744
BsaAI YACGTR 2 cut(s) 347, 447
BsaBI GATNNNNATC 1 cut(s) 1170
BsaHI GRCGYC 1 cut(s) 758
BsaJI CCNNGG 2 cut(s) 768, 1084
BsaWI WCCGGW 1 cut(s) 516
BsaXI ACNNNNNCTCC 2 cut(s) 1217, 1247
Bsc4I CCNNNNNNNGG 4 cut(s) 251, 350, 373, 1220
Bse118I RCCGGY 1 cut(s) 516
Bse1I ACTGG 3 cut(s) 510, 612, 1102
Bse21I CCTNAGG 1 cut(s) 669
Bse3DI GCAATG 4 cut(s) 54, 207, 208, 293
Bse8I GATNNNNATC 1 cut(s) 1170
BseDI CCNNGG 2 cut(s) 768, 1084
BseGI GGATG 3 cut(s) 823, 1002, 1243
BseJI GATNNNNATC 1 cut(s) 1170
BseLI CCNNNNNNNGG 4 cut(s) 251, 350, 373, 1220
BseMI GCAATG 4 cut(s) 54, 207, 208, 293
BseMII CTCAG 4 cut(s) 120, 369, 555, 758
BseNI ACTGG 3 cut(s) 510, 612, 1102
BseRI GAGGAG 1 cut(s) 767
BseSI GKGCMC 1 cut(s) 462
BseXI GCAGC 4 cut(s) 46, 373, 727, 1003
BseYI CCCAGC 1 cut(s) 20
Bsh1236I CGCG 2 cut(s) 214, 1185
BshFI GGCC 1 cut(s) 692
BshNI GGYRCC 1 cut(s) 757
BshTI ACCGGT 1 cut(s) 516
BsiHKAI GWGCWC 1 cut(s) 412
BsiSI CCGG 2 cut(s) 374, 517
BslFI GGGAC 1 cut(s) 899
BslI CCNNNNNNNGG 4 cut(s) 251, 350, 373, 1220
BsmFI GGGAC 1 cut(s) 899
BsnI GGCC 1 cut(s) 692
Bsp1286I GDGCHC 2 cut(s) 412, 462
Bsp143I GATC 5 cut(s) 787, 895, 1048, 1171, 1204
BspACI CCGC 4 cut(s) 72, 236, 981, 994
BspANI GGCC 1 cut(s) 692
BspCNI CTCAG 4 cut(s) 121, 370, 554, 757
BspFNI CGCG 2 cut(s) 214, 1185
BspLI GGNNCC 4 cut(s) 162, 675, 759, 1098
BspMAI CTGCAG 1 cut(s) 993
BspMI ACCTGC 1 cut(s) 685
BspPI GGATC 3 cut(s) 890, 1043, 1179
BspT107I GGYRCC 1 cut(s) 757
BsrDI GCAATG 4 cut(s) 54, 207, 208, 293
BsrFI RCCGGY 1 cut(s) 516
BsrI ACTGG 3 cut(s) 510, 612, 1102
BssAI RCCGGY 1 cut(s) 516
BssECI CCNNGG 2 cut(s) 768, 1084
BssMI GATC 5 cut(s) 787, 895, 1048, 1171, 1204
BssNI GRCGYC 1 cut(s) 758
BssSI CACGAG 1 cut(s) 1208
BssT1I CCWWGG 1 cut(s) 768
Bst2BI CACGAG 1 cut(s) 1208
Bst4CI ACNGT 3 cut(s) 185, 952, 1137
Bst6I CTCTTC 3 cut(s) 398, 729, 744
BstACI GRCGYC 1 cut(s) 758
BstAPI GCANNNNNTGC 2 cut(s) 56, 416
BstBAI YACGTR 2 cut(s) 347, 447
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 6 cut(s) 129, 378, 451, 541, 669, 744
BstDSI CCRYGG 1 cut(s) 1084
BstF5I GGATG 3 cut(s) 823, 1002, 1243
BstFNI CGCG 2 cut(s) 214, 1185
BstH2I RGCGCY 1 cut(s) 761
BstHHI GCGC 3 cut(s) 214, 760, 1185
BstKTI GATC 5 cut(s) 790, 898, 1051, 1174, 1207
BstMBI GATC 5 cut(s) 787, 895, 1048, 1171, 1204
BstMWI GCNNNNNNNGC 4 cut(s) 56, 383, 416, 664
BstNSI RCATGY 1 cut(s) 892
BstSFI CTRYAG 1 cut(s) 989
BstSLI GKGCMC 1 cut(s) 462
BstUI CGCG 2 cut(s) 214, 1185
BstV1I GCAGC 4 cut(s) 46, 373, 727, 1003
Bsu36I CCTNAGG 1 cut(s) 669
BsuRI GGCC 1 cut(s) 692
BtgI CCRYGG 1 cut(s) 1084
BtsCI GGATG 3 cut(s) 823, 1002, 1243
BtsIMutI CAGTG 1 cut(s) 503
BveI ACCTGC 1 cut(s) 685
Cac8I GCNNGC 1 cut(s) 18
CfoI GCGC 3 cut(s) 214, 760, 1185
Cfr10I RCCGGY 1 cut(s) 516
Cfr13I GGNCC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 448
CspAI ACCGGT 1 cut(s) 516
CviAII CATG 3 cut(s) 554, 889, 1129
CviQI GTAC 1 cut(s) 448
DdeI CTNAG 6 cut(s) 129, 378, 451, 541, 669, 744
DinI GGCGCC 1 cut(s) 759
DpnI GATC 5 cut(s) 789, 897, 1050, 1173, 1206
DpnII GATC 5 cut(s) 787, 895, 1048, 1171, 1204
DraIII CACNNNGTG 1 cut(s) 466
Eam1104I CTCTTC 3 cut(s) 398, 729, 744
EarI CTCTTC 3 cut(s) 398, 729, 744
EciI GGCGGA 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 768
Eco32I GATATC 1 cut(s) 481
Eco47I GGWCC 1 cut(s) 185
Eco81I CCTNAGG 1 cut(s) 669
EcoRV GATATC 1 cut(s) 481
EcoT14I CCWWGG 1 cut(s) 768
EgeI GGCGCC 1 cut(s) 759
EheI GGCGCC 1 cut(s) 759
ErhI CCWWGG 1 cut(s) 768
FaeI CATG 3 cut(s) 557, 892, 1132
FalI AAGNNNNNCTT 2 cut(s) 839, 871
FaqI GGGAC 1 cut(s) 899
FatI CATG 3 cut(s) 553, 888, 1128
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 5 cut(s) 14, 60, 387, 741, 992
FokI GGATG 3 cut(s) 830, 1009, 1250
Fsp4HI GCNGC 5 cut(s) 14, 60, 387, 741, 992
FspBI CTAG 1 cut(s) 801
GlaI GCGC 3 cut(s) 213, 759, 1184
GluI GCNGC 5 cut(s) 14, 60, 387, 741, 992
GsaI CCCAGC 1 cut(s) 24
HaeII RGCGCY 1 cut(s) 761
HaeIII GGCC 1 cut(s) 692
HapII CCGG 2 cut(s) 374, 517
HhaI GCGC 3 cut(s) 214, 760, 1185
Hin1I GRCGYC 1 cut(s) 758
Hin1II CATG 3 cut(s) 557, 892, 1132
Hin6I GCGC 3 cut(s) 212, 758, 1183
HinP1I GCGC 3 cut(s) 212, 758, 1183
HincII GTYRAC 1 cut(s) 525
HindII GTYRAC 1 cut(s) 525
HinfI GANTC 5 cut(s) 124, 145, 629, 778, 811
HpaII CCGG 2 cut(s) 374, 517
HphI GGTGA 4 cut(s) 623, 628, 1048, 1075
Hpy166II GTNNAC 3 cut(s) 364, 525, 1189
Hpy188I TCNGA 2 cut(s) 544, 1048
Hpy188III TCNNGA 7 cut(s) 103, 128, 746, 785, 815, 899, 1208
Hpy8I GTNNAC 3 cut(s) 364, 525, 1189
HpyAV CCTTC 6 cut(s) 151, 226, 377, 669, 691, 1060
HpyCH4III ACNGT 3 cut(s) 185, 952, 1137
HpyCH4IV ACGT 3 cut(s) 305, 346, 446
HpyCH4V TGCA 6 cut(s) 16, 302, 359, 389, 680, 991
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 383, 416, 664
HpyF3I CTNAG 6 cut(s) 129, 378, 451, 541, 669, 744
HpySE526I ACGT 3 cut(s) 305, 346, 446
Hsp92I GRCGYC 1 cut(s) 758
Hsp92II CATG 3 cut(s) 557, 892, 1132
HspAI GCGC 3 cut(s) 212, 758, 1183
KasI GGCGCC 1 cut(s) 757
Kzo9I GATC 5 cut(s) 787, 895, 1048, 1171, 1204
LmnI GCTCC 2 cut(s) 283, 1180
Lsp1109I GCAGC 4 cut(s) 46, 373, 727, 1003
LweI GCATC 2 cut(s) 307, 1228
MaeI CTAG 1 cut(s) 801
MaeII ACGT 3 cut(s) 305, 346, 446
MaeIII GTNAC 5 cut(s) 41, 220, 466, 905, 961
MalI GATC 5 cut(s) 789, 897, 1050, 1173, 1206
MboI GATC 5 cut(s) 787, 895, 1048, 1171, 1204
MboII GAAGA 8 cut(s) 249, 387, 415, 718, 746, 761, 1039, 1214
MhlI GDGCHC 2 cut(s) 412, 462
MluCI AATT 5 cut(s) 390, 496, 545, 592, 1110
Mly113I GGCGCC 1 cut(s) 758
MlyI GAGTC 1 cut(s) 118
MmeI TCCRAC 3 cut(s) 150, 465, 1215
MroXI GAANNNNTTC 1 cut(s) 633
MseI TTAA 3 cut(s) 500, 513, 582
MspA1I CMGCKG 3 cut(s) 72, 641, 994
MspI CCGG 2 cut(s) 374, 517
MvnI CGCG 2 cut(s) 214, 1185
MwoI GCNNNNNNNGC 4 cut(s) 56, 383, 416, 664
NarI GGCGCC 1 cut(s) 758
NdeII GATC 5 cut(s) 787, 895, 1048, 1171, 1204
NlaIII CATG 3 cut(s) 557, 892, 1132
NlaIV GGNNCC 4 cut(s) 162, 675, 759, 1098
NmeAIII GCCGAG 1 cut(s) 88
NmuCI GTSAC 2 cut(s) 466, 961
NspI RCATGY 1 cut(s) 892
PciI ACATGT 1 cut(s) 888
PdmI GAANNNNTTC 1 cut(s) 633
PfeI GAWTC 4 cut(s) 145, 629, 778, 811
PinAI ACCGGT 1 cut(s) 516
PkrI GCNGC 5 cut(s) 15, 61, 388, 742, 993
PleI GAGTC 1 cut(s) 118
PluTI GGCGCC 1 cut(s) 761
PpsI GAGTC 1 cut(s) 118
Ppu21I YACGTR 2 cut(s) 347, 447
PscI ACATGT 1 cut(s) 888
Psp1406I AACGTT 1 cut(s) 305
PspFI CCCAGC 1 cut(s) 20
PspN4I GGNNCC 4 cut(s) 162, 675, 759, 1098
PspPI GGNCC 1 cut(s) 185
PstI CTGCAG 1 cut(s) 993
PvuII CAGCTG 1 cut(s) 641
RsaI GTAC 1 cut(s) 449
RsaNI GTAC 1 cut(s) 448
SaqAI TTAA 3 cut(s) 500, 513, 582
SatI GCNGC 5 cut(s) 14, 60, 387, 741, 992
Sau3AI GATC 5 cut(s) 787, 895, 1048, 1171, 1204
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 1 cut(s) 118
SduI GDGCHC 2 cut(s) 412, 462
SfaNI GCATC 2 cut(s) 307, 1228
SfcI CTRYAG 1 cut(s) 989
SfoI GGCGCC 1 cut(s) 759
SinI GGWCC 1 cut(s) 185
Sse9I AATT 5 cut(s) 390, 496, 545, 592, 1110
SsiI CCGC 4 cut(s) 72, 236, 981, 994
SspDI GGCGCC 1 cut(s) 757
SspI AATATT 1 cut(s) 325
SspMI CTAG 1 cut(s) 801
StyI CCWWGG 1 cut(s) 768
TaaI ACNGT 3 cut(s) 185, 952, 1137
TaiI ACGT 3 cut(s) 308, 349, 449
TaqI TCGA 2 cut(s) 102, 116
TasI AATT 5 cut(s) 390, 496, 545, 592, 1110
TfiI GAWTC 4 cut(s) 145, 629, 778, 811
Tru1I TTAA 3 cut(s) 500, 513, 582
Tru9I TTAA 3 cut(s) 500, 513, 582
TscAI CASTG 1 cut(s) 510
TseFI GTSAC 2 cut(s) 466, 961
TseI GCWGC 5 cut(s) 13, 59, 386, 740, 991
Tsp45I GTSAC 2 cut(s) 466, 961
TspDTI ATGAA 7 cut(s) 158, 328, 834, 945, 957, 1096, 1131
TspGWI ACGGA 2 cut(s) 848, 1073
TspRI CASTG 1 cut(s) 510
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 1 cut(s) 545
XceI RCATGY 1 cut(s) 892
XmiI GTMKAC 1 cut(s) 363
XmnI GAANNNNTTC 1 cut(s) 633
XspI CTAG 1 cut(s) 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.