MD15G1403200.v1.1

Elongation factor 1 gamma, conserved domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
50419135 .. 50422795
3661 bp
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UTR
Exon/CDS
Intron
MD15G1403200.v1.1.491

Sequence Viewer

Length: 1269 bp
ATGGCTTTAGTGCTGCACGCCGGAAGCACCAACAAAAATGGTTTCAAGGCACTTATTGCTGCTGAGTTCAGTGGTGTCAAGGTGGAACTGGTCAAGAATTTCGAGATGGGTGTGTCCAATAAAAGTCCAAAGTTTCTCGAAATGAACCCCATTGGGAAGGTTCCTGTGTTAGAAACACCTGATGGCCCTATTTTTGAGAGCAATGCCATTGCACGCTACGTTACTCGGTTGAAGGCAGATAATCCTCTTTATGGTTCTTCCTTAATTGAATATGCTCGTGTGGAGCAATGGATTGATTTTGCCACACTGGAGATTGACGCCAATATTTTGCGATGGTTAATACCACTTATTGGTTTTTCTGTTTACCTTCCTCCGGTTGAGGAAGCTGCAGTTTCTGCATTGAAGAGAGCGCTAACTGCTTTGAACACTCATCTTTCTTCCAACACGTACCTGGTTGGGCATTCTGTGACTTTGGCTGATATCATTCTGACATGTAATTTGACTCTGGGATTTAGCCGGTTATTCACAAAAAGTTTTACCTCTGAATTTCCTCATGTTGAGAGATACTTTTGGACCTTAGTCAATCAACCAAATTTCCGCAAGATATTGGGTGAAGTTAAACAAGCAGAATCCGTTCCATCTATTCAATCAGTAAAGAAGCCGTCACAGGCGAAGGAACCTGCAAAACCTAAGGCCAAGGATGAGCCAAAGAAAGAGGACAAGAAAGAATCAGCAAAGCCTAAATTAGAAGAGGCTGCGGAAGAAGAGGCACCCAAGCCCAAGGCAAAGAATCCTCTTGATCTTTTGCCGCCTAGCAAGATGATTCTGGATGACTGGAAAAGACTTTACTCAAACACAAAGACCAACTTCCGTGAGGTTGCTGTTAAAGGATTCTGGGACATGTATGATCCAGAGGGTTATTCTCTTTGGTTCTGCGATTACAAGTACAATGATGAAAACACTGTTTCGTTTGTGACTTTGAACAAGGTGGGTGGTTTCTTGCAGCGGATGGATTTGGCTCGTAAGTACGCGTTTGGAAAGATGTTGGTGATTGGCTCGGCCCCTCCCTTCAAGGTTAAAGGCTTGTGGCTCTTCCGGGGACAAGAAATCCCGAAATTCATAATCGACGAGTGTTACGACATGGATCTGTACGAGTGGCGTAAGGTTGATATCACTGATGAGGATCAAAAAGAGCGTGTCAATCAAATGATTGAAGATCATGAGCCTTTCGAGGGGGAGGATTTATTGGATGCCAAATGTTTCAAGTGA

Protein Analysis

423

Amino Acids

48.04

Weight (kDa)

6.11

Isoelectric Point (pI)

39.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 9 - 75 8.3e-14 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 16 - 75 5.7e-08 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 16 - 80 3.4e-07 Glutathione S-transferase, N-terminal domain
GST_C PF00043 127 - 197 4.8e-11 Glutathione S-transferase, C-terminal domain
GST_C_2 PF13410 128 - 190 1e-05 Glutathione S-transferase, C-terminal domain
EF1G PF00647 261 - 369 7.2e-42 Elongation factor 1 gamma, conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 688
AccB1I GGYRCC 1 cut(s) 769
AccB7I CCANNNNNTGG 1 cut(s) 350
AccII CGCG 1 cut(s) 1031
AciI CCGC 4 cut(s) 598, 758, 809, 1006
AclWI GGATC 3 cut(s) 902, 1152, 1191
AcsI RAATTY 4 cut(s) 97, 545, 592, 1115
AcyI GRCGYC 1 cut(s) 318
AfaI GTAC 4 cut(s) 449, 947, 1028, 1151
AfeI AGCGCT 1 cut(s) 411
AfiI CCNNNNNNNGG 4 cut(s) 251, 350, 373, 1232
AflIII ACRYGT 4 cut(s) 444, 491, 900, 1029
AjnI CCWGG 1 cut(s) 450
AluBI AGCT 1 cut(s) 386
AluI AGCT 1 cut(s) 386
AlwI GGATC 3 cut(s) 902, 1152, 1191
AlwNI CAGNNNCTG 1 cut(s) 395
Aor51HI AGCGCT 1 cut(s) 411
AoxI GGCC 3 cut(s) 184, 693, 1059
ApeKI GCWGC 5 cut(s) 13, 59, 386, 755, 1003
ApoI RAATTY 4 cut(s) 97, 545, 592, 1115
ArsI GACNNNNNNTTYG 2 cut(s) 481, 513
Asp700I GAANNNNTTC 1 cut(s) 633
AspLEI GCGC 1 cut(s) 412
AspS9I GGNCC 3 cut(s) 185, 573, 1060
AsuC2I CCSGG 1 cut(s) 1097
AsuHPI GGTGA 2 cut(s) 623, 1060
AvaII GGWCC 1 cut(s) 573
AxyI CCTNAGG 1 cut(s) 690
BanI GGYRCC 1 cut(s) 769
BauI CACGAG 1 cut(s) 276
BbvI GCAGC 4 cut(s) 46, 373, 742, 1015
BccI CCATC 5 cut(s) 100, 176, 327, 646, 1003
BceAI ACGGC 1 cut(s) 646
BciT130I CCWGG 1 cut(s) 452
BcnI CCSGG 1 cut(s) 1097
BfaI CTAG 1 cut(s) 813
BfmI CTRYAG 1 cut(s) 387
BfoI RGCGCY 1 cut(s) 413
BfuAI ACCTGC 1 cut(s) 688
BisI GCNGC 6 cut(s) 14, 60, 387, 756, 809, 1004
BlsI GCNGC 6 cut(s) 15, 61, 388, 757, 810, 1005
Bme1390I CCNGG 2 cut(s) 452, 1097
Bme18I GGWCC 1 cut(s) 573
BmgT120I GGNCC 3 cut(s) 185, 573, 1060
BmiI GGNNCC 4 cut(s) 162, 678, 771, 1062
BmrFI CCNGG 2 cut(s) 452, 1097
BmsI GCATC 1 cut(s) 1240
BoxI GACNNNNGTC 1 cut(s) 578
BpmI CTGGAG 1 cut(s) 329
BpuMI CCSGG 1 cut(s) 1097
BsaAI YACGTR 1 cut(s) 447
BsaBI GATNNNNATC 1 cut(s) 1182
BsaHI GRCGYC 1 cut(s) 318
BsaJI CCNNGG 3 cut(s) 696, 780, 1096
BsaWI WCCGGW 1 cut(s) 373
Bsc4I CCNNNNNNNGG 4 cut(s) 251, 350, 373, 1232
Bse118I RCCGGY 1 cut(s) 516
Bse1I ACTGG 3 cut(s) 93, 312, 839
Bse21I CCTNAGG 1 cut(s) 690
Bse3DI GCAATG 3 cut(s) 207, 208, 293
Bse8I GATNNNNATC 1 cut(s) 1182
BseBI CCWGG 1 cut(s) 452
BseDI CCNNGG 3 cut(s) 696, 780, 1096
BseGI GGATG 4 cut(s) 706, 835, 1014, 1255
BseJI GATNNNNATC 1 cut(s) 1182
BseLI CCNNNNNNNGG 4 cut(s) 251, 350, 373, 1232
BseMI GCAATG 3 cut(s) 207, 208, 293
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 3 cut(s) 93, 312, 839
BseXI GCAGC 4 cut(s) 46, 373, 742, 1015
Bsh1236I CGCG 1 cut(s) 1031
BshFI GGCC 3 cut(s) 186, 695, 1061
BshNI GGYRCC 1 cut(s) 769
BsiSI CCGG 4 cut(s) 21, 374, 517, 1096
BslFI GGGAC 2 cut(s) 911, 1113
BslI CCNNNNNNNGG 4 cut(s) 251, 350, 373, 1232
BsmFI GGGAC 2 cut(s) 911, 1113
BsmI GAATGC 1 cut(s) 460
BsnI GGCC 3 cut(s) 186, 695, 1061
Bsp143I GATC 5 cut(s) 799, 907, 1144, 1183, 1216
BspACI CCGC 4 cut(s) 598, 758, 809, 1006
BspANI GGCC 3 cut(s) 186, 695, 1061
BspCNI CTCAG 1 cut(s) 55
BspFNI CGCG 1 cut(s) 1031
BspHI TCATGA 1 cut(s) 1219
BspLI GGNNCC 4 cut(s) 162, 678, 771, 1062
BspMAI CTGCAG 1 cut(s) 391
BspMI ACCTGC 1 cut(s) 688
BspPI GGATC 3 cut(s) 902, 1152, 1191
BspQI GCTCTTC 1 cut(s) 1097
BspT107I GGYRCC 1 cut(s) 769
BsrDI GCAATG 3 cut(s) 207, 208, 293
BsrFI RCCGGY 1 cut(s) 516
BsrI ACTGG 3 cut(s) 93, 312, 839
BssAI RCCGGY 1 cut(s) 516
BssECI CCNNGG 3 cut(s) 696, 780, 1096
BssMI GATC 5 cut(s) 799, 907, 1144, 1183, 1216
BssNI GRCGYC 1 cut(s) 318
BssSI CACGAG 1 cut(s) 276
BssT1I CCWWGG 2 cut(s) 696, 780
Bst2BI CACGAG 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 452
Bst4CI ACNGT 1 cut(s) 964
Bst6I CTCTTC 4 cut(s) 398, 744, 759, 1097
BstACI GRCGYC 1 cut(s) 318
BstAPI GCANNNNNTGC 2 cut(s) 56, 395
BstBAI YACGTR 1 cut(s) 447
BstC8I GCNNGC 2 cut(s) 18, 214
BstDEI CTNAG 3 cut(s) 63, 577, 690
BstF5I GGATG 4 cut(s) 706, 835, 1014, 1255
BstFNI CGCG 1 cut(s) 1031
BstH2I RGCGCY 1 cut(s) 413
BstHHI GCGC 1 cut(s) 412
BstKTI GATC 5 cut(s) 802, 910, 1147, 1186, 1219
BstMBI GATC 5 cut(s) 799, 907, 1144, 1183, 1216
BstMWI GCNNNNNNNGC 3 cut(s) 56, 395, 416
BstNI CCWGG 1 cut(s) 452
BstNSI RCATGY 2 cut(s) 495, 904
BstPAI GACNNNNGTC 1 cut(s) 578
BstSCI CCNGG 2 cut(s) 450, 1095
BstSFI CTRYAG 1 cut(s) 387
BstUI CGCG 1 cut(s) 1031
BstV1I GCAGC 4 cut(s) 46, 373, 742, 1015
BstX2I RGATCY 1 cut(s) 1144
BstYI RGATCY 1 cut(s) 1144
Bsu36I CCTNAGG 1 cut(s) 690
BsuRI GGCC 3 cut(s) 186, 695, 1061
BtgZI GCGATG 1 cut(s) 346
BtsCI GGATG 4 cut(s) 706, 835, 1014, 1255
BtsIMutI CAGTG 4 cut(s) 76, 305, 960, 1173
BveI ACCTGC 1 cut(s) 688
Cac8I GCNNGC 2 cut(s) 18, 214
CaiI CAGNNNCTG 1 cut(s) 395
CciI TCATGA 1 cut(s) 1219
CfoI GCGC 1 cut(s) 412
Cfr10I RCCGGY 1 cut(s) 516
Cfr13I GGNCC 3 cut(s) 185, 573, 1060
CseI GACGC 1 cut(s) 326
CsiI ACCWGGT 1 cut(s) 450
Csp6I GTAC 4 cut(s) 448, 946, 1027, 1150
CspCI CAANNNNNGTGG 2 cut(s) 973, 1008
CviAII CATG 5 cut(s) 492, 554, 901, 1141, 1220
CviQI GTAC 4 cut(s) 448, 946, 1027, 1150
DdeI CTNAG 3 cut(s) 63, 577, 690
DpnI GATC 5 cut(s) 801, 909, 1146, 1185, 1218
DpnII GATC 5 cut(s) 799, 907, 1144, 1183, 1216
Eam1104I CTCTTC 4 cut(s) 398, 744, 759, 1097
EarI CTCTTC 4 cut(s) 398, 744, 759, 1097
Eco130I CCWWGG 2 cut(s) 696, 780
Eco32I GATATC 2 cut(s) 481, 1171
Eco47I GGWCC 1 cut(s) 573
Eco47III AGCGCT 1 cut(s) 411
Eco81I CCTNAGG 1 cut(s) 690
EcoRII CCWGG 1 cut(s) 450
EcoRV GATATC 2 cut(s) 481, 1171
EcoT14I CCWWGG 2 cut(s) 696, 780
ErhI CCWWGG 2 cut(s) 696, 780
FaeI CATG 5 cut(s) 495, 557, 904, 1144, 1223
FaiI YATR 9 cut(s) 252, 273, 493, 555, 902, 906, 1121, 1142, 1221
FalI AAGNNNNNCTT 2 cut(s) 851, 883
FaqI GGGAC 2 cut(s) 911, 1113
FatI CATG 5 cut(s) 491, 553, 900, 1140, 1219
Fnu4HI GCNGC 6 cut(s) 14, 60, 387, 756, 809, 1004
FokI GGATG 4 cut(s) 713, 842, 1021, 1262
Fsp4HI GCNGC 6 cut(s) 14, 60, 387, 756, 809, 1004
FspBI CTAG 1 cut(s) 813
GlaI GCGC 1 cut(s) 411
GluI GCNGC 6 cut(s) 14, 60, 387, 756, 809, 1004
GsuI CTGGAG 1 cut(s) 329
HaeII RGCGCY 1 cut(s) 413
HaeIII GGCC 3 cut(s) 186, 695, 1061
HapII CCGG 4 cut(s) 21, 374, 517, 1096
HgaI GACGC 1 cut(s) 326
HhaI GCGC 1 cut(s) 412
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 5 cut(s) 495, 557, 904, 1144, 1223
Hin6I GCGC 1 cut(s) 410
HinP1I GCGC 1 cut(s) 410
HinfI GANTC 6 cut(s) 502, 629, 728, 790, 823, 891
HpaII CCGG 4 cut(s) 21, 374, 517, 1096
HphI GGTGA 2 cut(s) 623, 1060
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 2 cut(s) 489, 544
Hpy188III TCNNGA 8 cut(s) 94, 103, 137, 797, 827, 911, 1111, 1220
Hpy8I GTNNAC 1 cut(s) 364
Hpy99I CGWCG 1 cut(s) 1130
HpyAV CCTTC 5 cut(s) 151, 226, 377, 667, 1078
HpyCH4III ACNGT 1 cut(s) 964
HpyCH4IV ACGT 2 cut(s) 219, 446
HpyCH4V TGCA 6 cut(s) 16, 212, 389, 398, 683, 1003
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 395, 416
HpyF3I CTNAG 3 cut(s) 63, 577, 690
HpySE526I ACGT 2 cut(s) 219, 446
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 5 cut(s) 495, 557, 904, 1144, 1223
HspAI GCGC 1 cut(s) 410
Kzo9I GATC 5 cut(s) 799, 907, 1144, 1183, 1216
LguI GCTCTTC 1 cut(s) 1097
LmnI GCTCC 1 cut(s) 283
Lsp1109I GCAGC 4 cut(s) 46, 373, 742, 1015
LweI GCATC 1 cut(s) 1240
MabI ACCWGGT 1 cut(s) 450
MaeI CTAG 1 cut(s) 813
MaeII ACGT 2 cut(s) 219, 446
MaeIII GTNAC 5 cut(s) 220, 466, 663, 973, 1133
MalI GATC 5 cut(s) 801, 909, 1146, 1185, 1218
MboI GATC 5 cut(s) 799, 907, 1144, 1183, 1216
MboII GAAGA 8 cut(s) 249, 415, 429, 761, 773, 776, 1084, 1226
MflI RGATCY 1 cut(s) 1144
MluCI AATT 7 cut(s) 97, 264, 496, 545, 592, 743, 1115
MluI ACGCGT 1 cut(s) 1029
MlyI GAGTC 1 cut(s) 496
MmeI TCCRAC 1 cut(s) 465
MroXI GAANNNNTTC 1 cut(s) 633
MseI TTAA 5 cut(s) 263, 338, 618, 885, 1077
MspA1I CMGCKG 1 cut(s) 1006
MspI CCGG 4 cut(s) 21, 374, 517, 1096
MspR9I CCNGG 2 cut(s) 452, 1097
Mva1269I GAATGC 1 cut(s) 460
MvaI CCWGG 1 cut(s) 452
MvnI CGCG 1 cut(s) 1031
MwoI GCNNNNNNNGC 3 cut(s) 56, 395, 416
NciI CCSGG 1 cut(s) 1097
NdeII GATC 5 cut(s) 799, 907, 1144, 1183, 1216
NlaIII CATG 5 cut(s) 495, 557, 904, 1144, 1223
NlaIV GGNNCC 4 cut(s) 162, 678, 771, 1062
NmeAIII GCCGAG 1 cut(s) 1037
NmuCI GTSAC 3 cut(s) 466, 663, 973
NspI RCATGY 2 cut(s) 495, 904
PagI TCATGA 1 cut(s) 1219
PciI ACATGT 2 cut(s) 491, 900
PciSI GCTCTTC 1 cut(s) 1097
PcsI WCGNNNNNNNCGW 1 cut(s) 1134
PctI GAATGC 1 cut(s) 460
PdmI GAANNNNTTC 1 cut(s) 633
PfeI GAWTC 5 cut(s) 629, 728, 790, 823, 891
PflMI CCANNNNNTGG 1 cut(s) 350
PkrI GCNGC 6 cut(s) 15, 61, 388, 757, 810, 1005
PleI GAGTC 1 cut(s) 496
PpsI GAGTC 1 cut(s) 496
Ppu21I YACGTR 1 cut(s) 447
PscI ACATGT 2 cut(s) 491, 900
PshAI GACNNNNGTC 1 cut(s) 578
Psp6I CCWGG 1 cut(s) 450
PspGI CCWGG 1 cut(s) 450
PspN4I GGNNCC 4 cut(s) 162, 678, 771, 1062
PspPI GGNCC 3 cut(s) 185, 573, 1060
PstI CTGCAG 1 cut(s) 391
PstNI CAGNNNCTG 1 cut(s) 395
PsuI RGATCY 1 cut(s) 1144
RsaI GTAC 4 cut(s) 449, 947, 1028, 1151
RsaNI GTAC 4 cut(s) 448, 946, 1027, 1150
SapI GCTCTTC 1 cut(s) 1097
SaqAI TTAA 5 cut(s) 263, 338, 618, 885, 1077
SatI GCNGC 6 cut(s) 14, 60, 387, 756, 809, 1004
Sau3AI GATC 5 cut(s) 799, 907, 1144, 1183, 1216
Sau96I GGNCC 3 cut(s) 185, 573, 1060
SchI GAGTC 1 cut(s) 496
ScrFI CCNGG 2 cut(s) 452, 1097
SexAI ACCWGGT 1 cut(s) 450
SfaNI GCATC 1 cut(s) 1240
SfcI CTRYAG 1 cut(s) 387
SinI GGWCC 1 cut(s) 573
Sse9I AATT 7 cut(s) 97, 264, 496, 545, 592, 743, 1115
SsiI CCGC 4 cut(s) 598, 758, 809, 1006
SspI AATATT 1 cut(s) 325
SspMI CTAG 1 cut(s) 813
StyD4I CCNGG 2 cut(s) 450, 1095
StyI CCWWGG 2 cut(s) 696, 780
TaaI ACNGT 1 cut(s) 964
TaiI ACGT 2 cut(s) 222, 449
TaqI TCGA 4 cut(s) 102, 138, 1125, 1230
TasI AATT 7 cut(s) 97, 264, 496, 545, 592, 743, 1115
TatI WGTACW 1 cut(s) 945
TauI GCSGC 1 cut(s) 811
TfiI GAWTC 5 cut(s) 629, 728, 790, 823, 891
Tru1I TTAA 5 cut(s) 263, 338, 618, 885, 1077
Tru9I TTAA 5 cut(s) 263, 338, 618, 885, 1077
TscAI CASTG 4 cut(s) 76, 312, 967, 1180
TseFI GTSAC 3 cut(s) 466, 663, 973
TseI GCWGC 5 cut(s) 13, 59, 386, 755, 1003
Tsp45I GTSAC 3 cut(s) 466, 663, 973
TspDTI ATGAA 3 cut(s) 158, 969, 1108
TspGWI ACGGA 2 cut(s) 622, 860
TspRI CASTG 4 cut(s) 76, 312, 967, 1180
Van91I CCANNNNNTGG 1 cut(s) 350
VpaK11BI GGWCC 1 cut(s) 573
XapI RAATTY 4 cut(s) 97, 545, 592, 1115
XceI RCATGY 2 cut(s) 495, 904
XcmI CCANNNNNNNNNTGG 1 cut(s) 448
XmnI GAANNNNTTC 1 cut(s) 633
XspI CTAG 1 cut(s) 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.