Rh7BG387800

Elongation factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Reverse (-)
42264820 .. 42268724
3905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG387800.1

Sequence Viewer

Length: 1248 bp
ATGTTGGTGCTTCACGCTGGGAACACCAATAAGAATGGTTACAAGGCACTTATTGCTGCCGAGTTCAGCGGTGTCAATGTTGAGCTGGTGAAGGATTTCGAGATGGGTGTGTCGAACAAGACTCCCCAGTTTCTCAAAATGAACCCCATTGGGAAGGTTCCTGTGTTGGAAACGCCGGATGGTCCTGTTTTTGAGAGCAATGCCATTGCGCGATATGGTGAGGGCTCGATGTTAGGACTTTTGAAGTTGTATATAGAGATTATTGCCCTTGTGGAGCAATGGATTGATTTTGCAACGTTAGAGATTGATGCCAATATTTTGCGTTGGTTCATACCACGTATCGGTTTTGCAGTCTACCTTTCTCCAGCTGAGGAAGCTGCAATTTCTTCCTTGAAGAGAGCACTAACTGCTTTGAACACTCATCTTGCTTCCAACACGTACTTAGTTGGGCACTCTGTGACATTGGCTGATATCATTATGATATGTAATTTAACACTGGGTTTTAACCGGTTGTTGACAAAAAGTTTTACCTCAGAATTTCCTCATGTTGAGAGATACTTTTGGACATTGGTTAATCAGCCTAATTTTCGCAAGATACTGGGTGAGGTGAAACAAGCTGAATCTGTTCCAGCTGTTCAGTCAAAGAAGCCTTCACAGCCTAAGGAACCTACAAAGAAAGAGGCCAAGAAGGAAGTGAAGAAAGAACCAGCAAAGCCTAAAGTAGAAGAGGCTTCTCAGGAAGAGGAGGCGCCCAAGCCCAAGGCAAAGAATCCTCTTGATCTTTTGCCTCCTAGCAAGATGATTCTGGATGAATGGAAAAGGCTTTATTCAAACACAAAGACCAACTTCCATGAGGTTGCTGTCAAAGGCTTCTGGGACATGTATGATCCAGTGGATTACTCCCTTTGGTTTTGCAATTACAAGTACAACAATGAAAATACAGTTTCATTTGTGACTTTGAACAAGGTGGGCGGTTTTCTGCAGCGGATGGATTTGGCTCGTAAATATGCGTTTGGGAAGATGTTGGTGATTGGGTCTGATCCTCCTTTCAAGGTGAAGGGCTTGTGGCTGTTCCGTGGGCAAGAGGTTCCCCAGTTCATAATTGATGAATGTTATGACATGGAACTGTGTGATTGGTGTAAGGTTGATATAACTGATGAGGATCAAAAGGAGCGCGTGAACCACATGATTGAAGATCACGAGCCTTTTGAGGGGGAGGCTTTGTTGGATGCCAAATGCTTCAAGTGA

Protein Analysis

415

Amino Acids

47.24

Weight (kDa)

5.93

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 11 - 72 1.1e-12 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 15 - 72 2.1e-07 Glutathione S-transferase, N-terminal domain
GST_C PF00043 125 - 194 2.4e-10 Glutathione S-transferase, C-terminal domain
EF1G PF00647 254 - 362 5.4e-41 Elongation factor 1 gamma, conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 748
AccI GTMKAC 1 cut(s) 354
AccII CGCG 2 cut(s) 211, 1176
AciI CCGC 3 cut(s) 69, 972, 985
AclI AACGTT 1 cut(s) 296
AclWI GGATC 3 cut(s) 881, 1034, 1170
AcsI RAATTY 1 cut(s) 536
AcyI GRCGYC 1 cut(s) 749
AdeI CACNNNGTG 1 cut(s) 457
AfaI GTAC 2 cut(s) 440, 926
AfiI CCNNNNNNNGG 2 cut(s) 341, 1211
AflIII ACRYGT 2 cut(s) 435, 879
AgeI ACCGGT 1 cut(s) 507
AgsI TTSAA 8 cut(s) 244, 394, 415, 831, 961, 1051, 1193, 1243
AluBI AGCT 5 cut(s) 85, 368, 377, 617, 632
AluI AGCT 5 cut(s) 85, 368, 377, 617, 632
Alw21I GWGCWC 1 cut(s) 403
AlwI GGATC 3 cut(s) 881, 1034, 1170
AoxI GGCC 1 cut(s) 681
ApeKI GCWGC 3 cut(s) 56, 377, 982
ApoI RAATTY 1 cut(s) 536
AsiGI ACCGGT 1 cut(s) 507
Asp700I GAANNNNTTC 2 cut(s) 95, 624
AspLEI GCGC 3 cut(s) 211, 751, 1176
AspS9I GGNCC 1 cut(s) 182
AsuHPI GGTGA 6 cut(s) 100, 230, 614, 619, 1039, 1066
AvaII GGWCC 1 cut(s) 182
AxyI CCTNAGG 1 cut(s) 660
BaeGI GKGCMC 1 cut(s) 453
BanI GGYRCC 1 cut(s) 748
BanII GRGCYC 1 cut(s) 227
BauI CACGAG 1 cut(s) 1199
Bbv12I GWGCWC 1 cut(s) 403
BbvCI CCTCAGC 1 cut(s) 369
BbvI GCAGC 3 cut(s) 43, 364, 994
BccI CCATC 3 cut(s) 97, 173, 982
BfaI CTAG 1 cut(s) 792
BfmI CTRYAG 1 cut(s) 980
BfoI RGCGCY 1 cut(s) 752
BisI GCNGC 3 cut(s) 57, 378, 983
BlsI GCNGC 3 cut(s) 58, 379, 984
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 182
BmiI GGNNCC 4 cut(s) 159, 666, 750, 1089
BmrI ACTGGG 4 cut(s) 121, 506, 608, 1087
BmsI GCATC 2 cut(s) 298, 1219
BmuI ACTGGG 4 cut(s) 121, 506, 608, 1087
BpmI CTGGAG 1 cut(s) 348
Bpu10I CCTNAGC 1 cut(s) 369
BsaAI YACGTR 2 cut(s) 338, 438
BsaBI GATNNNNATC 1 cut(s) 1161
BsaHI GRCGYC 1 cut(s) 749
BsaJI CCNNGG 2 cut(s) 759, 1075
BsaWI WCCGGW 1 cut(s) 507
BsaXI ACNNNNNCTCC 2 cut(s) 1208, 1238
Bsc4I CCNNNNNNNGG 2 cut(s) 341, 1211
Bse118I RCCGGY 1 cut(s) 507
Bse1I ACTGG 5 cut(s) 127, 501, 603, 890, 1093
Bse21I CCTNAGG 1 cut(s) 660
Bse3DI GCAATG 3 cut(s) 204, 205, 284
Bse8I GATNNNNATC 1 cut(s) 1161
BseDI CCNNGG 2 cut(s) 759, 1075
BseGI GGATG 4 cut(s) 184, 814, 993, 1234
BseJI GATNNNNATC 1 cut(s) 1161
BseLI CCNNNNNNNGG 2 cut(s) 341, 1211
BseMI GCAATG 3 cut(s) 204, 205, 284
BseMII CTCAG 3 cut(s) 360, 546, 749
BseNI ACTGG 5 cut(s) 127, 501, 603, 890, 1093
BseRI GAGGAG 1 cut(s) 758
BseSI GKGCMC 1 cut(s) 453
BseXI GCAGC 3 cut(s) 43, 364, 994
BseYI CCCAGC 1 cut(s) 17
Bsh1236I CGCG 2 cut(s) 211, 1176
BshFI GGCC 1 cut(s) 683
BshNI GGYRCC 1 cut(s) 748
BshTI ACCGGT 1 cut(s) 507
BsiHKAI GWGCWC 1 cut(s) 403
BsiSI CCGG 2 cut(s) 176, 508
BslFI GGGAC 1 cut(s) 890
BslI CCNNNNNNNGG 2 cut(s) 341, 1211
BsmFI GGGAC 1 cut(s) 890
BsnI GGCC 1 cut(s) 683
Bsp1286I GDGCHC 3 cut(s) 227, 403, 453
Bsp143I GATC 5 cut(s) 778, 886, 1039, 1162, 1195
BspACI CCGC 3 cut(s) 69, 972, 985
BspANI GGCC 1 cut(s) 683
BspCNI CTCAG 3 cut(s) 361, 545, 748
BspFNI CGCG 2 cut(s) 211, 1176
BspLI GGNNCC 4 cut(s) 159, 666, 750, 1089
BspMAI CTGCAG 1 cut(s) 984
BspPI GGATC 3 cut(s) 881, 1034, 1170
BspT107I GGYRCC 1 cut(s) 748
BsrDI GCAATG 3 cut(s) 204, 205, 284
BsrFI RCCGGY 1 cut(s) 507
BsrI ACTGG 5 cut(s) 127, 501, 603, 890, 1093
BssAI RCCGGY 1 cut(s) 507
BssECI CCNNGG 2 cut(s) 759, 1075
BssMI GATC 5 cut(s) 778, 886, 1039, 1162, 1195
BssNI GRCGYC 1 cut(s) 749
BssSI CACGAG 1 cut(s) 1199
BssT1I CCWWGG 1 cut(s) 759
Bst2BI CACGAG 1 cut(s) 1199
Bst4CI ACNGT 2 cut(s) 943, 1128
Bst6I CTCTTC 3 cut(s) 389, 720, 735
BstACI GRCGYC 1 cut(s) 749
BstAPI GCANNNNNTGC 2 cut(s) 53, 407
BstBAI YACGTR 2 cut(s) 338, 438
BstDEI CTNAG 5 cut(s) 369, 442, 532, 660, 735
BstDSI CCRYGG 1 cut(s) 1075
BstF5I GGATG 4 cut(s) 184, 814, 993, 1234
BstFNI CGCG 2 cut(s) 211, 1176
BstH2I RGCGCY 1 cut(s) 752
BstHHI GCGC 3 cut(s) 211, 751, 1176
BstKTI GATC 5 cut(s) 781, 889, 1042, 1165, 1198
BstMBI GATC 5 cut(s) 778, 886, 1039, 1162, 1195
BstMWI GCNNNNNNNGC 4 cut(s) 53, 374, 407, 655
BstNSI RCATGY 1 cut(s) 883
BstSFI CTRYAG 1 cut(s) 980
BstSLI GKGCMC 1 cut(s) 453
BstUI CGCG 2 cut(s) 211, 1176
BstV1I GCAGC 3 cut(s) 43, 364, 994
Bsu36I CCTNAGG 1 cut(s) 660
BsuRI GGCC 1 cut(s) 683
BtgI CCRYGG 1 cut(s) 1075
BtsCI GGATG 4 cut(s) 184, 814, 993, 1234
BtsIMutI CAGTG 2 cut(s) 494, 897
CfoI GCGC 3 cut(s) 211, 751, 1176
Cfr10I RCCGGY 1 cut(s) 507
Cfr13I GGNCC 1 cut(s) 182
Csp6I GTAC 2 cut(s) 439, 925
CspAI ACCGGT 1 cut(s) 507
CviAII CATG 5 cut(s) 545, 851, 880, 1120, 1186
CviQI GTAC 2 cut(s) 439, 925
DdeI CTNAG 5 cut(s) 369, 442, 532, 660, 735
DinI GGCGCC 1 cut(s) 750
DpnI GATC 5 cut(s) 780, 888, 1041, 1164, 1197
DpnII GATC 5 cut(s) 778, 886, 1039, 1162, 1195
DraIII CACNNNGTG 1 cut(s) 457
Eam1104I CTCTTC 3 cut(s) 389, 720, 735
EarI CTCTTC 3 cut(s) 389, 720, 735
Eco130I CCWWGG 1 cut(s) 759
Eco24I GRGCYC 1 cut(s) 227
Eco32I GATATC 1 cut(s) 472
Eco47I GGWCC 1 cut(s) 182
Eco81I CCTNAGG 1 cut(s) 660
EcoRV GATATC 1 cut(s) 472
EcoT14I CCWWGG 1 cut(s) 759
EcoT38I GRGCYC 1 cut(s) 227
EgeI GGCGCC 1 cut(s) 750
EheI GGCGCC 1 cut(s) 750
ErhI CCWWGG 1 cut(s) 759
FaeI CATG 5 cut(s) 548, 854, 883, 1123, 1189
FalI AAGNNNNNCTT 2 cut(s) 830, 862
FaqI GGGAC 1 cut(s) 890
FatI CATG 5 cut(s) 544, 850, 879, 1119, 1185
FblI GTMKAC 1 cut(s) 354
Fnu4HI GCNGC 3 cut(s) 57, 378, 983
FokI GGATG 4 cut(s) 191, 821, 1000, 1241
FriOI GRGCYC 1 cut(s) 227
Fsp4HI GCNGC 3 cut(s) 57, 378, 983
FspBI CTAG 1 cut(s) 792
GlaI GCGC 3 cut(s) 210, 750, 1175
GluI GCNGC 3 cut(s) 57, 378, 983
GsaI CCCAGC 1 cut(s) 21
GsuI CTGGAG 1 cut(s) 348
HaeII RGCGCY 1 cut(s) 752
HaeIII GGCC 1 cut(s) 683
HapII CCGG 2 cut(s) 176, 508
HhaI GCGC 3 cut(s) 211, 751, 1176
Hin1I GRCGYC 1 cut(s) 749
Hin1II CATG 5 cut(s) 548, 854, 883, 1123, 1189
Hin6I GCGC 3 cut(s) 209, 749, 1174
HinP1I GCGC 3 cut(s) 209, 749, 1174
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HinfI GANTC 4 cut(s) 121, 620, 769, 802
HpaII CCGG 2 cut(s) 176, 508
HphI GGTGA 6 cut(s) 100, 230, 614, 619, 1039, 1066
Hpy166II GTNNAC 3 cut(s) 355, 516, 1180
Hpy188I TCNGA 2 cut(s) 535, 1039
Hpy188III TCNNGA 5 cut(s) 100, 737, 776, 806, 1199
Hpy8I GTNNAC 3 cut(s) 355, 516, 1180
HpyAV CCTTC 5 cut(s) 85, 148, 660, 682, 1051
HpyCH4III ACNGT 2 cut(s) 943, 1128
HpyCH4IV ACGT 3 cut(s) 296, 337, 437
HpyCH4V TGCA 5 cut(s) 293, 350, 380, 915, 982
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 374, 407, 655
HpyF3I CTNAG 5 cut(s) 369, 442, 532, 660, 735
HpySE526I ACGT 3 cut(s) 296, 337, 437
Hsp92I GRCGYC 1 cut(s) 749
Hsp92II CATG 5 cut(s) 548, 854, 883, 1123, 1189
HspAI GCGC 3 cut(s) 209, 749, 1174
KasI GGCGCC 1 cut(s) 748
Kzo9I GATC 5 cut(s) 778, 886, 1039, 1162, 1195
LmnI GCTCC 2 cut(s) 274, 1171
Lsp1109I GCAGC 3 cut(s) 43, 364, 994
LweI GCATC 2 cut(s) 298, 1219
MaeI CTAG 1 cut(s) 792
MaeII ACGT 3 cut(s) 296, 337, 437
MaeIII GTNAC 3 cut(s) 38, 457, 952
MalI GATC 5 cut(s) 780, 888, 1041, 1164, 1197
MboI GATC 5 cut(s) 778, 886, 1039, 1162, 1195
MboII GAAGA 7 cut(s) 378, 406, 709, 737, 752, 1030, 1205
MhlI GDGCHC 3 cut(s) 227, 403, 453
MluCI AATT 6 cut(s) 381, 487, 536, 583, 916, 1101
Mly113I GGCGCC 1 cut(s) 749
MlyI GAGTC 1 cut(s) 115
MmeI TCCRAC 3 cut(s) 147, 456, 1206
MroXI GAANNNNTTC 2 cut(s) 95, 624
MseI TTAA 3 cut(s) 491, 504, 573
MspA1I CMGCKG 4 cut(s) 69, 368, 632, 985
MspI CCGG 2 cut(s) 176, 508
MvnI CGCG 2 cut(s) 211, 1176
MwoI GCNNNNNNNGC 4 cut(s) 53, 374, 407, 655
NarI GGCGCC 1 cut(s) 749
NdeII GATC 5 cut(s) 778, 886, 1039, 1162, 1195
NlaIII CATG 5 cut(s) 548, 854, 883, 1123, 1189
NlaIV GGNNCC 4 cut(s) 159, 666, 750, 1089
NmeAIII GCCGAG 1 cut(s) 85
NmuCI GTSAC 2 cut(s) 457, 952
NspI RCATGY 1 cut(s) 883
PciI ACATGT 1 cut(s) 879
PdmI GAANNNNTTC 2 cut(s) 95, 624
PfeI GAWTC 3 cut(s) 620, 769, 802
PinAI ACCGGT 1 cut(s) 507
PkrI GCNGC 3 cut(s) 58, 379, 984
PleI GAGTC 1 cut(s) 115
PluTI GGCGCC 1 cut(s) 752
PpsI GAGTC 1 cut(s) 115
Ppu21I YACGTR 2 cut(s) 338, 438
PscI ACATGT 1 cut(s) 879
Psp1406I AACGTT 1 cut(s) 296
PspFI CCCAGC 1 cut(s) 17
PspN4I GGNNCC 4 cut(s) 159, 666, 750, 1089
PspPI GGNCC 1 cut(s) 182
PstI CTGCAG 1 cut(s) 984
PvuII CAGCTG 2 cut(s) 368, 632
RsaI GTAC 2 cut(s) 440, 926
RsaNI GTAC 2 cut(s) 439, 925
SaqAI TTAA 3 cut(s) 491, 504, 573
SatI GCNGC 3 cut(s) 57, 378, 983
Sau3AI GATC 5 cut(s) 778, 886, 1039, 1162, 1195
Sau96I GGNCC 1 cut(s) 182
SchI GAGTC 1 cut(s) 115
SduI GDGCHC 3 cut(s) 227, 403, 453
SfaNI GCATC 2 cut(s) 298, 1219
SfcI CTRYAG 1 cut(s) 980
SfoI GGCGCC 1 cut(s) 750
SinI GGWCC 1 cut(s) 182
Sse9I AATT 6 cut(s) 381, 487, 536, 583, 916, 1101
SsiI CCGC 3 cut(s) 69, 972, 985
SspDI GGCGCC 1 cut(s) 748
SspI AATATT 1 cut(s) 316
SspMI CTAG 1 cut(s) 792
StyI CCWWGG 1 cut(s) 759
TaaI ACNGT 2 cut(s) 943, 1128
TaiI ACGT 3 cut(s) 299, 340, 440
TaqI TCGA 3 cut(s) 99, 113, 227
TasI AATT 6 cut(s) 381, 487, 536, 583, 916, 1101
TatI WGTACW 1 cut(s) 924
TfiI GAWTC 3 cut(s) 620, 769, 802
Tru1I TTAA 3 cut(s) 491, 504, 573
Tru9I TTAA 3 cut(s) 491, 504, 573
TscAI CASTG 2 cut(s) 501, 897
TseFI GTSAC 2 cut(s) 457, 952
TseI GCWGC 3 cut(s) 56, 377, 982
Tsp45I GTSAC 2 cut(s) 457, 952
TspDTI ATGAA 7 cut(s) 155, 319, 825, 936, 948, 1087, 1122
TspGWI ACGGA 1 cut(s) 1064
TspRI CASTG 2 cut(s) 501, 897
VpaK11BI GGWCC 1 cut(s) 182
XapI RAATTY 1 cut(s) 536
XceI RCATGY 1 cut(s) 883
XmiI GTMKAC 1 cut(s) 354
XmnI GAANNNNTTC 2 cut(s) 95, 624
XspI CTAG 1 cut(s) 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.