Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002822.1

Orthogroup ID

OG0000992

Physical Location & Seq

Genomic Coordinates Forward (+)

126409 .. 129415

Gene Structure 3007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002822.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

atggctttggtgctgcacgctgggaacaccaataagaatggttacaaggcactcattgctgccgagttcagcggtgtcaatgttgagctggtgaaggatttcgagatggttactcgtttgaaggcggataatcccctttatggttcctcctggatcgaatatgcccttgtggagcaatggattgattttgcaacgttagagattgatgccaatattttgcgttggttcataccacgtatcggttttgcagtctaccttcctcctgctgaggaagctgcaatttcttccttgaagagagcactaactgctttgaacactcatcttgcttccaacacgtacttagttgggcactctgtgacattggctgatatcattatgatatgtaatttaacactgggttttaaccggttgttgacaaaaagttttacctcagaatttcctcatgttgagagatacttttggacattggttaatcagcctaattttcgcaagatactgggtgaggtgaaacaagctgaatctgttccagctattcagtcaaagaagccttcacagcctaaggaacctgcaaagaaagaggccaagaaggaagtgaagaaagagccagcaaagcctaaagtagaagaggctgctcaggaagaggaggcacccaaacccaaggcaaagaatcctcttgatcttttgcctcctagcaagatgattctggatgaatggaaaaggctttattcaaacacaaagaccaacttccgtgaggttgctgtcaaaggcttctgggacatgtatgatccagagggttactctctttggttttgcgattacaaatacaatgatgaaaatacagtctcattcgtgactttaaacaaggtgggcggctttctgcagcggatggatttggctcgtaaatatgcgtttgggaagatgttggtgattggatctgatcctcctttcaaggtgaagggcttgtggctgttccgtgggcaagaggttccccagttcatatttgatgaatgttatgatatggaactgtatgattggcataaggttgatatcactgatgaggatcaaaaggagcgcgtgaaccagatgattgaagatcacgagccttttgagggggaggccttgttggatgccaaatgcttcaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

381

Amino Acids

43.77

Weight (kDa)

5.72

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09640 AT1G57720 AT1G57720
fragaria_vesca	FvH4_5g28250 FvH4_5g28250 FvH4_5g32590 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560
malus_domestica	MD08G1244100.v1.1 MD15G1403200.v1.1 MD15G1438400.v1.1
prunus_persica	Prupe.1G549300_v2.0.a1 Prupe.1G549300_v2.0.a1 Prupe.1G581500_v2.0.a1 Prupe.1G581500_v2.0.a1
pyrus_communis	pycom08g21180 pycom15g36060 pycom15g38640
rosa_chinensis	RchiOBHm_Chr7g0220411 RchiOBHm_Chr7g0229581 RchiOBHm_Chr7g0229711 RchiOBHm_Chr7g0230101 RchiOBHm_Chr7g0230191
rosa_laevigata	RLG00000001508 RLG00000001510
rosa_multiflora	Rmu_sc0000693.1_g000058 Rmu_sc0000851.1_g000010 Rmu_sc0001621.1_g000005 Rmu_sc0001918.1_g000014 Rmu_sc0002666.1_g000007 Rmu_sc0002822.1_g000020 Rmu_sc0002822.1_g000031 Rmu_sc0004110.1_g000004 Rmu_ssc0000189.1_g000051
rosa_roxburghii	Rroxscaffold_3G00230290 Rroxscaffold_3G00230310 Rroxscaffold_3G00239390
rosa_rugosa	Rorug07G0193900 Rorug07G0259200 Rorug07G0259700 Rorug07G0259900 Rorug07G0260000
rosa_samantha	Rh7AG334900 Rh7AG408700 Rh7AG409300 Rh7AG409800 Rh7BG325900 Rh7BG387800 Rh7BG388100 Rh7BG388200 Rh7BG388600 Rh7CG352600 Rh7CG427700
rosa_wichuraiana	Rw0G018580 Rw0G022570 Rw7G028550 Rw7G033930 Rw7G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	574
AccB1I	GGYRCC	1 cut(s)	646
AccI	GTMKAC	1 cut(s)	252
AccII	CGCG	1 cut(s)	1074
AciI	CCGC	4 cut(s)	72, 125, 870, 883
AclI	AACGTT	1 cut(s)	194
AclWI	GGATC	5 cut(s)	161, 779, 932, 940, 1068
AcsI	RAATTY	1 cut(s)	434
AdeI	CACNNNGTG	1 cut(s)	355
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	3 cut(s)	140, 239, 1109
AflIII	ACRYGT	2 cut(s)	333, 777
AgeI	ACCGGT	1 cut(s)	405
AgsI	TTSAA	7 cut(s)	121, 292, 313, 729, 949, 1091, 1141
AjnI	CCWGG	1 cut(s)	149
AluBI	AGCT	4 cut(s)	88, 275, 515, 530
AluI	AGCT	4 cut(s)	88, 275, 515, 530
Alw21I	GWGCWC	1 cut(s)	301
Alw26I	GTCTC	1 cut(s)	847
AlwI	GGATC	5 cut(s)	161, 779, 932, 940, 1068
AoxI	GGCC	2 cut(s)	579, 1116
ApeKI	GCWGC	5 cut(s)	13, 59, 275, 629, 880
ApoI	RAATTY	1 cut(s)	434
AsiGI	ACCGGT	1 cut(s)	405
Asp700I	GAANNNNTTC	2 cut(s)	98, 522
AspLEI	GCGC	1 cut(s)	1074
AsuHPI	GGTGA	5 cut(s)	103, 512, 517, 937, 964
AxyI	CCTNAGG	1 cut(s)	558
BaeGI	GKGCMC	1 cut(s)	351
BanI	GGYRCC	1 cut(s)	646
BauI	CACGAG	1 cut(s)	1097
Bbv12I	GWGCWC	1 cut(s)	301
BbvCI	CCTCAGC	1 cut(s)	267
BbvI	GCAGC	4 cut(s)	46, 262, 616, 892
BccI	CCATC	2 cut(s)	100, 880
BciT130I	CCWGG	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	847
BfaI	CTAG	1 cut(s)	690
BfmI	CTRYAG	1 cut(s)	878
BfuAI	ACCTGC	1 cut(s)	574
BisI	GCNGC	6 cut(s)	14, 60, 276, 630, 871, 881
BlsI	GCNGC	6 cut(s)	15, 61, 277, 631, 872, 882
Bme1390I	CCNGG	1 cut(s)	151
BmiI	GGNNCC	4 cut(s)	145, 564, 648, 987
BmrFI	CCNGG	1 cut(s)	151
BmrI	ACTGGG	3 cut(s)	404, 506, 985
BmsI	GCATC	2 cut(s)	196, 1117
BmuI	ACTGGG	3 cut(s)	404, 506, 985
BplI	GAGNNNNNCTC	2 cut(s)	782, 814
Bpu10I	CCTNAGC	2 cut(s)	267, 633
BsaAI	YACGTR	2 cut(s)	236, 336
BsaBI	GATNNNNATC	1 cut(s)	1059
BsaJI	CCNNGG	2 cut(s)	657, 973
BsaWI	WCCGGW	1 cut(s)	405
BsaXI	ACNNNNNCTCC	2 cut(s)	1106, 1136
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 239, 1109
Bse118I	RCCGGY	1 cut(s)	405
Bse1I	ACTGG	3 cut(s)	399, 501, 991
Bse21I	CCTNAGG	1 cut(s)	558
Bse3DI	GCAATG	2 cut(s)	54, 182
Bse8I	GATNNNNATC	1 cut(s)	1059
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	2 cut(s)	657, 973
BseGI	GGATG	3 cut(s)	712, 891, 1132
BseJI	GATNNNNATC	1 cut(s)	1059
BseLI	CCNNNNNNNGG	3 cut(s)	140, 239, 1109
BseMI	GCAATG	2 cut(s)	54, 182
BseMII	CTCAG	3 cut(s)	258, 444, 647
BseNI	ACTGG	3 cut(s)	399, 501, 991
BseRI	GAGGAG	1 cut(s)	656
BseSI	GKGCMC	1 cut(s)	351
BseXI	GCAGC	4 cut(s)	46, 262, 616, 892
BseYI	CCCAGC	1 cut(s)	20
Bsh1236I	CGCG	1 cut(s)	1074
BshFI	GGCC	2 cut(s)	581, 1118
BshNI	GGYRCC	1 cut(s)	646
BshTI	ACCGGT	1 cut(s)	405
BsiHKAI	GWGCWC	1 cut(s)	301
BsiSI	CCGG	1 cut(s)	406
BslFI	GGGAC	1 cut(s)	788
BslI	CCNNNNNNNGG	3 cut(s)	140, 239, 1109
BsmAI	GTCTC	1 cut(s)	847
BsmFI	GGGAC	1 cut(s)	788
BsnI	GGCC	2 cut(s)	581, 1118
Bsp1286I	GDGCHC	2 cut(s)	301, 351
Bsp143I	GATC	7 cut(s)	153, 676, 784, 932, 937, 1060, 1093
BspACI	CCGC	4 cut(s)	72, 125, 870, 883
BspANI	GGCC	2 cut(s)	581, 1118
BspCNI	CTCAG	3 cut(s)	259, 443, 646
BspFNI	CGCG	1 cut(s)	1074
BspLI	GGNNCC	4 cut(s)	145, 564, 648, 987
BspMAI	CTGCAG	1 cut(s)	882
BspMI	ACCTGC	1 cut(s)	574
BspPI	GGATC	5 cut(s)	161, 779, 932, 940, 1068
BspT107I	GGYRCC	1 cut(s)	646
BsrDI	GCAATG	2 cut(s)	54, 182
BsrFI	RCCGGY	1 cut(s)	405
BsrI	ACTGG	3 cut(s)	399, 501, 991
BssAI	RCCGGY	1 cut(s)	405
BssECI	CCNNGG	2 cut(s)	657, 973
BssMI	GATC	7 cut(s)	153, 676, 784, 932, 937, 1060, 1093
BssSI	CACGAG	1 cut(s)	1097
BssT1I	CCWWGG	1 cut(s)	657
Bst2BI	CACGAG	1 cut(s)	1097
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	2 cut(s)	841, 1026
Bst6I	CTCTTC	3 cut(s)	287, 618, 633
BstAPI	GCANNNNNTGC	2 cut(s)	56, 305
BstBAI	YACGTR	2 cut(s)	236, 336
BstC8I	GCNNGC	2 cut(s)	18, 606
BstDEI	CTNAG	5 cut(s)	267, 340, 430, 558, 633
BstDSI	CCRYGG	1 cut(s)	973
BstF5I	GGATG	3 cut(s)	712, 891, 1132
BstFNI	CGCG	1 cut(s)	1074
BstHHI	GCGC	1 cut(s)	1074
BstKTI	GATC	7 cut(s)	156, 679, 787, 935, 940, 1063, 1096
BstMAI	GTCTC	1 cut(s)	847
BstMBI	GATC	7 cut(s)	153, 676, 784, 932, 937, 1060, 1093
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 272, 305, 553, 610
BstNI	CCWGG	1 cut(s)	151
BstNSI	RCATGY	1 cut(s)	781
BstSCI	CCNGG	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	878
BstSLI	GKGCMC	1 cut(s)	351
BstUI	CGCG	1 cut(s)	1074
BstV1I	GCAGC	4 cut(s)	46, 262, 616, 892
BstX2I	RGATCY	1 cut(s)	932
BstYI	RGATCY	1 cut(s)	932
Bsu36I	CCTNAGG	1 cut(s)	558
BsuRI	GGCC	2 cut(s)	581, 1118
BtgI	CCRYGG	1 cut(s)	973
BtsCI	GGATG	3 cut(s)	712, 891, 1132
BtsIMutI	CAGTG	2 cut(s)	392, 1050
BveI	ACCTGC	1 cut(s)	574
Cac8I	GCNNGC	2 cut(s)	18, 606
CfoI	GCGC	1 cut(s)	1074
Cfr10I	RCCGGY	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	337
CspAI	ACCGGT	1 cut(s)	405
CviAII	CATG	2 cut(s)	443, 778
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	5 cut(s)	267, 340, 430, 558, 633
DpnI	GATC	7 cut(s)	155, 678, 786, 934, 939, 1062, 1095
DpnII	GATC	7 cut(s)	153, 676, 784, 932, 937, 1060, 1093
DraI	TTTAAA	1 cut(s)	858
DraIII	CACNNNGTG	1 cut(s)	355
Eam1104I	CTCTTC	3 cut(s)	287, 618, 633
EarI	CTCTTC	3 cut(s)	287, 618, 633
EciI	GGCGGA	1 cut(s)	140
Eco130I	CCWWGG	1 cut(s)	657
Eco147I	AGGCCT	1 cut(s)	1118
Eco32I	GATATC	2 cut(s)	370, 1048
Eco81I	CCTNAGG	1 cut(s)	558
EcoRII	CCWGG	1 cut(s)	149
EcoRV	GATATC	2 cut(s)	370, 1048
EcoT14I	CCWWGG	1 cut(s)	657
ErhI	CCWWGG	1 cut(s)	657
FaeI	CATG	2 cut(s)	446, 781
FalI	AAGNNNNNCTT	2 cut(s)	728, 760
FaqI	GGGAC	1 cut(s)	788
FatI	CATG	2 cut(s)	442, 777
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	6 cut(s)	14, 60, 276, 630, 871, 881
FokI	GGATG	3 cut(s)	719, 898, 1139
Fsp4HI	GCNGC	6 cut(s)	14, 60, 276, 630, 871, 881
FspBI	CTAG	1 cut(s)	690
GlaI	GCGC	1 cut(s)	1073
GluI	GCNGC	6 cut(s)	14, 60, 276, 630, 871, 881
GsaI	CCCAGC	1 cut(s)	24
HaeIII	GGCC	2 cut(s)	581, 1118
HapII	CCGG	1 cut(s)	406
HhaI	GCGC	1 cut(s)	1074
Hin1II	CATG	2 cut(s)	446, 781
Hin6I	GCGC	1 cut(s)	1072
HinP1I	GCGC	1 cut(s)	1072
HincII	GTYRAC	1 cut(s)	414
HindII	GTYRAC	1 cut(s)	414
HinfI	GANTC	3 cut(s)	518, 667, 700
HpaII	CCGG	1 cut(s)	406
HphI	GGTGA	5 cut(s)	103, 512, 517, 937, 964
Hpy166II	GTNNAC	3 cut(s)	253, 414, 1078
Hpy188I	TCNGA	2 cut(s)	433, 937
Hpy188III	TCNNGA	7 cut(s)	103, 635, 674, 704, 788, 850, 1097
Hpy8I	GTNNAC	3 cut(s)	253, 414, 1078
HpyAV	CCTTC	6 cut(s)	88, 115, 266, 558, 580, 949
HpyCH4III	ACNGT	2 cut(s)	841, 1026
HpyCH4IV	ACGT	3 cut(s)	194, 235, 335
HpyCH4V	TGCA	6 cut(s)	16, 191, 248, 278, 569, 880
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 272, 305, 553, 610
HpyF3I	CTNAG	5 cut(s)	267, 340, 430, 558, 633
HpySE526I	ACGT	3 cut(s)	194, 235, 335
Hsp92II	CATG	2 cut(s)	446, 781
HspAI	GCGC	1 cut(s)	1072
Kzo9I	GATC	7 cut(s)	153, 676, 784, 932, 937, 1060, 1093
LmnI	GCTCC	2 cut(s)	172, 1069
Lsp1109I	GCAGC	4 cut(s)	46, 262, 616, 892
LweI	GCATC	2 cut(s)	196, 1117
MaeI	CTAG	1 cut(s)	690
MaeII	ACGT	3 cut(s)	194, 235, 335
MaeIII	GTNAC	5 cut(s)	41, 109, 355, 794, 850
MalI	GATC	7 cut(s)	155, 678, 786, 934, 939, 1062, 1095
MboI	GATC	7 cut(s)	153, 676, 784, 932, 937, 1060, 1093
MboII	GAAGA	7 cut(s)	276, 304, 607, 635, 650, 928, 1103
MflI	RGATCY	1 cut(s)	932
MhlI	GDGCHC	2 cut(s)	301, 351
MluCI	AATT	4 cut(s)	279, 385, 434, 481
MmeI	TCCRAC	2 cut(s)	354, 1104
MroXI	GAANNNNTTC	2 cut(s)	98, 522
MseI	TTAA	4 cut(s)	389, 402, 471, 857
MspA1I	CMGCKG	2 cut(s)	72, 883
MspI	CCGG	1 cut(s)	406
MspR9I	CCNGG	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	151
MvnI	CGCG	1 cut(s)	1074
MwoI	GCNNNNNNNGC	5 cut(s)	56, 272, 305, 553, 610
NdeII	GATC	7 cut(s)	153, 676, 784, 932, 937, 1060, 1093
NlaIII	CATG	2 cut(s)	446, 781
NlaIV	GGNNCC	4 cut(s)	145, 564, 648, 987
NmeAIII	GCCGAG	1 cut(s)	88
NmuCI	GTSAC	2 cut(s)	355, 850
NspI	RCATGY	1 cut(s)	781
PceI	AGGCCT	1 cut(s)	1118
PciI	ACATGT	1 cut(s)	777
PdmI	GAANNNNTTC	2 cut(s)	98, 522
PfeI	GAWTC	3 cut(s)	518, 667, 700
PfoI	TCCNGGA	1 cut(s)	149
PinAI	ACCGGT	1 cut(s)	405
PkrI	GCNGC	6 cut(s)	15, 61, 277, 631, 872, 882
Ppu21I	YACGTR	2 cut(s)	236, 336
PscI	ACATGT	1 cut(s)	777
Psp1406I	AACGTT	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	149
PspFI	CCCAGC	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	4 cut(s)	145, 564, 648, 987
PstI	CTGCAG	1 cut(s)	882
PsuI	RGATCY	1 cut(s)	932
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SaqAI	TTAA	4 cut(s)	389, 402, 471, 857
SatI	GCNGC	6 cut(s)	14, 60, 276, 630, 871, 881
Sau3AI	GATC	7 cut(s)	153, 676, 784, 932, 937, 1060, 1093
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	2 cut(s)	301, 351
SfaNI	GCATC	2 cut(s)	196, 1117
SfcI	CTRYAG	1 cut(s)	878
Sse9I	AATT	4 cut(s)	279, 385, 434, 481
SseBI	AGGCCT	1 cut(s)	1118
SsiI	CCGC	4 cut(s)	72, 125, 870, 883
SspI	AATATT	1 cut(s)	214
SspMI	CTAG	1 cut(s)	690
StuI	AGGCCT	1 cut(s)	1118
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	657
TaaI	ACNGT	2 cut(s)	841, 1026
TaiI	ACGT	3 cut(s)	197, 238, 338
TaqI	TCGA	2 cut(s)	102, 156
TasI	AATT	4 cut(s)	279, 385, 434, 481
TauI	GCSGC	1 cut(s)	873
TfiI	GAWTC	3 cut(s)	518, 667, 700
Tru1I	TTAA	4 cut(s)	389, 402, 471, 857
Tru9I	TTAA	4 cut(s)	389, 402, 471, 857
TscAI	CASTG	2 cut(s)	399, 1057
TseFI	GTSAC	2 cut(s)	355, 850
TseI	GCWGC	5 cut(s)	13, 59, 275, 629, 880
Tsp45I	GTSAC	2 cut(s)	355, 850
TspDTI	ATGAA	5 cut(s)	217, 723, 846, 985, 1020
TspGWI	ACGGA	2 cut(s)	737, 962
TspRI	CASTG	2 cut(s)	399, 1057
XapI	RAATTY	1 cut(s)	434
XceI	RCATGY	1 cut(s)	781
XmiI	GTMKAC	1 cut(s)	252
XmnI	GAANNNNTTC	2 cut(s)	98, 522
XspI	CTAG	1 cut(s)	690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.