FvH4_5g32590

Elongation factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
23528232 .. 23531896
3665 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g32590.t1

Sequence Viewer

Length: 1260 bp
ATGGCTCTGGTGCTGCACGCTGCGAGCAACAATAAGAATGGCTACAAGGCACTCATTGCTGCTGAGTACTGCGGTGTCAAGGTTGAGCTTGTGAAGGATTTCCAGATGGGTGTGTCGAATAAGACCCCTGAGTTCCTCAAACTCAACCCCATTGGGAAGGTTCCTGTGCTGGAGACCCCGGATGGTCCTGTTTTCGAGAGCAATGCCATTGCGCGATATGTTGCTCGTTTGAAGGCGGATACTCCTCTTTTTGGTTCTTCCTTGATTGAACATGCCCTTGTGGACCAATGGATTGATTTTGCAACTCTAGAGATTGATGCCAATATTTTGCGTTGGTTCATACCGCGTATCGGTTTTGCAGTCTACCTCCCTCCTGCTGAGGAAGCTGCAATTTCTTCCTTGAAGAGAGCACTAACTGCTTTGAACACTCATCTTGCTTCCAACACATACTTAGTTGGGCACTCTGTGACATTGGCTGATATCATTATGATATCTAATTTAACACTGGGATTTAACCGGTTGTTGACAAAAAGTTTTACCTCTGAATTTCCTCATGTGGAGAGATACTTTTGGACGTTGGTTAATCAGCCTAATTTTCACAAGTTACTGGGTGAGGTGAAACAAGCTGAGTCTGTTCCACCTGTTCAGTCTGCAAAGAAGCCTTCACAGCCTAAGGAACCTGCAAAGAAAGAGGCCAAAAAGGAAGTGACGAAAGAAGCACCAAAGCCTAAAGTAGAAGAGGCTGTGGAGGAAGCAGAGGCACCCAAGCCCAAGGCAAAGAATCCTCTTGATCTTTTGCCTCCTAGCAAGATGATTCTGGATGATTGGAAAAGGCTTTATTCAAACACAAAGACCAACTTCCGTGAGGTTGCTGTCAAAGGCTTCTGGGACATGTATGATCCAGAGGGTTACTCTCTTTGGTTCTGTGATTACAAATACAACGATGAAAATACAGTTTCATTCGTGACTTTAAACAAGGTAGGTGGCTTTCTGCAGCGGATGGATTTGGCTCGTAAATATGCATTTGGTAAGATGTTGGTGATTGGGTCTGATCCTCCTTTCAAGGTGAAAGGCTTGTGGCTCTTCCGTGGGCAAGAGGTTCCCCAGTTCATAATTGATGAATGTTATGACATGGAACTGTATGATTGGTGTAAGGTTGATATCACTGATGAGAATCAAAAGGAGCGCGTGAATCAGATGATTGAAGATCACGAGCCTTTTGAGGGGGAAGCTTTGTTGGATGCCAAATGCTTCAAGTGA

Protein Analysis

420

Amino Acids

47.53

Weight (kDa)

5.93

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 8 - 76 7.1e-15 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 16 - 76 1.2e-09 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 16 - 79 7.8e-07 Glutathione S-transferase, N-terminal domain
GST_C PF00043 128 - 197 9.6e-10 Glutathione S-transferase, C-terminal domain
EF1G PF00647 258 - 366 2.7e-42 Elongation factor 1 gamma, conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 688
AccB1I GGYRCC 1 cut(s) 760
AccI GTMKAC 1 cut(s) 363
AccII CGCG 3 cut(s) 214, 346, 1188
AciI CCGC 4 cut(s) 72, 236, 344, 997
AclWI GGATC 2 cut(s) 893, 1046
AcsI RAATTY 1 cut(s) 545
AdeI CACNNNGTG 1 cut(s) 466
AfaI GTAC 1 cut(s) 68
AfiI CCNNNNNNNGG 3 cut(s) 251, 350, 1223
AflIII ACRYGT 1 cut(s) 891
AgeI ACCGGT 1 cut(s) 516
AgsI TTSAA 8 cut(s) 232, 269, 403, 424, 843, 1063, 1205, 1255
AluBI AGCT 4 cut(s) 88, 386, 626, 1232
AluI AGCT 4 cut(s) 88, 386, 626, 1232
Alw21I GWGCWC 1 cut(s) 412
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 2 cut(s) 893, 1046
AoxI GGCC 1 cut(s) 693
ApeKI GCWGC 5 cut(s) 13, 20, 59, 386, 994
ApoI RAATTY 1 cut(s) 545
AsiGI ACCGGT 1 cut(s) 516
Asp700I GAANNNNTTC 1 cut(s) 98
AspLEI GCGC 2 cut(s) 214, 1188
AspS9I GGNCC 2 cut(s) 185, 283
AsuC2I CCSGG 1 cut(s) 179
AsuHPI GGTGA 4 cut(s) 623, 628, 1051, 1078
AvaII GGWCC 2 cut(s) 185, 283
AxyI CCTNAGG 1 cut(s) 672
BaeGI GKGCMC 1 cut(s) 462
BanI GGYRCC 1 cut(s) 760
BauI CACGAG 1 cut(s) 1211
Bbv12I GWGCWC 1 cut(s) 412
BbvCI CCTCAGC 1 cut(s) 378
BbvI GCAGC 4 cut(s) 7, 46, 373, 1006
BccI CCATC 3 cut(s) 100, 176, 994
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BciVI GTATCC 1 cut(s) 232
BcnI CCSGG 1 cut(s) 179
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 2 cut(s) 308, 804
BfmI CTRYAG 1 cut(s) 992
BfuAI ACCTGC 1 cut(s) 688
BfuI GTATCC 1 cut(s) 232
BisI GCNGC 5 cut(s) 14, 21, 60, 387, 995
BlsI GCNGC 5 cut(s) 15, 22, 61, 388, 996
BmcAI AGTACT 1 cut(s) 68
Bme1390I CCNGG 1 cut(s) 179
Bme18I GGWCC 2 cut(s) 185, 283
BmgT120I GGNCC 2 cut(s) 185, 283
BmiI GGNNCC 4 cut(s) 162, 678, 762, 1101
BmrFI CCNGG 1 cut(s) 179
BmrI ACTGGG 3 cut(s) 515, 617, 1099
BmsI GCATC 2 cut(s) 307, 1231
BmuI ACTGGG 3 cut(s) 515, 617, 1099
BplI GAGNNNNNCTC 2 cut(s) 896, 928
BpmI CTGGAG 1 cut(s) 191
Bpu10I CCTNAGC 1 cut(s) 378
BpuMI CCSGG 1 cut(s) 179
BsaBI GATNNNNATC 1 cut(s) 1173
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 3 cut(s) 177, 771, 1087
BsaWI WCCGGW 1 cut(s) 516
Bsc4I CCNNNNNNNGG 3 cut(s) 251, 350, 1223
Bse118I RCCGGY 1 cut(s) 516
Bse1I ACTGG 3 cut(s) 510, 612, 1105
Bse21I CCTNAGG 1 cut(s) 672
Bse3DI GCAATG 3 cut(s) 54, 207, 208
Bse8I GATNNNNATC 1 cut(s) 1173
BseDI CCNNGG 3 cut(s) 177, 771, 1087
BseGI GGATG 4 cut(s) 187, 826, 1005, 1246
BseJI GATNNNNATC 1 cut(s) 1173
BseLI CCNNNNNNNGG 3 cut(s) 251, 350, 1223
BseMI GCAATG 3 cut(s) 54, 207, 208
BseMII CTCAG 4 cut(s) 54, 120, 369, 618
BseNI ACTGG 3 cut(s) 510, 612, 1105
BseRI GAGGAG 1 cut(s) 234
BseSI GKGCMC 1 cut(s) 462
BseXI GCAGC 4 cut(s) 7, 46, 373, 1006
Bsh1236I CGCG 3 cut(s) 214, 346, 1188
BshFI GGCC 1 cut(s) 695
BshNI GGYRCC 1 cut(s) 760
BshTI ACCGGT 1 cut(s) 516
BsiHKAI GWGCWC 1 cut(s) 412
BsiSI CCGG 2 cut(s) 179, 517
BslFI GGGAC 1 cut(s) 902
BslI CCNNNNNNNGG 3 cut(s) 251, 350, 1223
BsmAI GTCTC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 902
BsnI GGCC 1 cut(s) 695
Bso31I GGTCTC 1 cut(s) 167
Bsp1286I GDGCHC 2 cut(s) 412, 462
Bsp143I GATC 4 cut(s) 790, 898, 1051, 1207
BspACI CCGC 4 cut(s) 72, 236, 344, 997
BspANI GGCC 1 cut(s) 695
BspCNI CTCAG 4 cut(s) 55, 121, 370, 619
BspFNI CGCG 3 cut(s) 214, 346, 1188
BspLI GGNNCC 4 cut(s) 162, 678, 762, 1101
BspMAI CTGCAG 1 cut(s) 996
BspMI ACCTGC 1 cut(s) 688
BspPI GGATC 2 cut(s) 893, 1046
BspQI GCTCTTC 1 cut(s) 1088
BspT107I GGYRCC 1 cut(s) 760
BspTNI GGTCTC 1 cut(s) 167
BsrDI GCAATG 3 cut(s) 54, 207, 208
BsrFI RCCGGY 1 cut(s) 516
BsrI ACTGG 3 cut(s) 510, 612, 1105
BssAI RCCGGY 1 cut(s) 516
BssECI CCNNGG 3 cut(s) 177, 771, 1087
BssMI GATC 4 cut(s) 790, 898, 1051, 1207
BssSI CACGAG 1 cut(s) 1211
BssT1I CCWWGG 1 cut(s) 771
Bst2BI CACGAG 1 cut(s) 1211
Bst4CI ACNGT 2 cut(s) 955, 1140
Bst6I CTCTTC 3 cut(s) 398, 732, 1088
BstAPI GCANNNNNTGC 2 cut(s) 56, 416
BstC8I GCNNGC 2 cut(s) 18, 25
BstDEI CTNAG 6 cut(s) 63, 129, 378, 451, 627, 672
BstDSI CCRYGG 1 cut(s) 1087
BstF5I GGATG 4 cut(s) 187, 826, 1005, 1246
BstFNI CGCG 3 cut(s) 214, 346, 1188
BstHHI GCGC 2 cut(s) 214, 1188
BstKTI GATC 4 cut(s) 793, 901, 1054, 1210
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 4 cut(s) 790, 898, 1051, 1207
BstMWI GCNNNNNNNGC 4 cut(s) 56, 383, 416, 667
BstNSI RCATGY 2 cut(s) 275, 895
BstSCI CCNGG 1 cut(s) 177
BstSFI CTRYAG 1 cut(s) 992
BstSLI GKGCMC 1 cut(s) 462
BstUI CGCG 3 cut(s) 214, 346, 1188
BstV1I GCAGC 4 cut(s) 7, 46, 373, 1006
Bsu36I CCTNAGG 1 cut(s) 672
BsuI GTATCC 1 cut(s) 232
BsuRI GGCC 1 cut(s) 695
BtgI CCRYGG 1 cut(s) 1087
BtsCI GGATG 4 cut(s) 187, 826, 1005, 1246
BtsIMutI CAGTG 2 cut(s) 503, 1164
BveI ACCTGC 1 cut(s) 688
Cac8I GCNNGC 2 cut(s) 18, 25
CfoI GCGC 2 cut(s) 214, 1188
Cfr10I RCCGGY 1 cut(s) 516
Cfr13I GGNCC 2 cut(s) 185, 283
Csp6I GTAC 1 cut(s) 67
CspAI ACCGGT 1 cut(s) 516
CspCI CAANNNNNGTGG 2 cut(s) 964, 999
CviAII CATG 4 cut(s) 272, 554, 892, 1132
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 6 cut(s) 63, 129, 378, 451, 627, 672
DpnI GATC 4 cut(s) 792, 900, 1053, 1209
DpnII GATC 4 cut(s) 790, 898, 1051, 1207
DraI TTTAAA 1 cut(s) 972
DraIII CACNNNGTG 1 cut(s) 466
Eam1104I CTCTTC 3 cut(s) 398, 732, 1088
EarI CTCTTC 3 cut(s) 398, 732, 1088
EciI GGCGGA 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 771
Eco31I GGTCTC 1 cut(s) 167
Eco32I GATATC 3 cut(s) 481, 492, 1162
Eco47I GGWCC 2 cut(s) 185, 283
Eco81I CCTNAGG 1 cut(s) 672
EcoRV GATATC 3 cut(s) 481, 492, 1162
EcoT14I CCWWGG 1 cut(s) 771
EcoT22I ATGCAT 1 cut(s) 1024
ErhI CCWWGG 1 cut(s) 771
FaeI CATG 4 cut(s) 275, 557, 895, 1135
FalI AAGNNNNNCTT 2 cut(s) 842, 874
FaqI GGGAC 1 cut(s) 902
FatI CATG 4 cut(s) 271, 553, 891, 1131
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 5 cut(s) 14, 21, 60, 387, 995
FokI GGATG 4 cut(s) 194, 833, 1012, 1253
Fsp4HI GCNGC 5 cut(s) 14, 21, 60, 387, 995
FspBI CTAG 2 cut(s) 308, 804
GlaI GCGC 2 cut(s) 213, 1187
GluI GCNGC 5 cut(s) 14, 21, 60, 387, 995
GsuI CTGGAG 1 cut(s) 191
HaeIII GGCC 1 cut(s) 695
HapII CCGG 2 cut(s) 179, 517
HhaI GCGC 2 cut(s) 214, 1188
Hin1II CATG 4 cut(s) 275, 557, 895, 1135
Hin6I GCGC 2 cut(s) 212, 1186
HinP1I GCGC 2 cut(s) 212, 1186
HincII GTYRAC 1 cut(s) 525
HindII GTYRAC 1 cut(s) 525
HindIII AAGCTT 1 cut(s) 1230
HinfI GANTC 5 cut(s) 629, 781, 814, 1174, 1192
HpaII CCGG 2 cut(s) 179, 517
HphI GGTGA 4 cut(s) 623, 628, 1051, 1078
Hpy166II GTNNAC 3 cut(s) 283, 364, 525
Hpy188I TCNGA 3 cut(s) 544, 1051, 1197
Hpy188III TCNNGA 8 cut(s) 103, 196, 308, 788, 818, 902, 964, 1211
Hpy8I GTNNAC 3 cut(s) 283, 364, 525
HpyAV CCTTC 4 cut(s) 88, 151, 226, 672
HpyCH4III ACNGT 2 cut(s) 955, 1140
HpyCH4IV ACGT 1 cut(s) 575
HpyCH4V TGCA 8 cut(s) 16, 302, 359, 389, 653, 683, 994, 1022
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 383, 416, 667
HpyF3I CTNAG 6 cut(s) 63, 129, 378, 451, 627, 672
HpySE526I ACGT 1 cut(s) 575
Hsp92II CATG 4 cut(s) 275, 557, 895, 1135
HspAI GCGC 2 cut(s) 212, 1186
Kzo9I GATC 4 cut(s) 790, 898, 1051, 1207
LguI GCTCTTC 1 cut(s) 1088
LmnI GCTCC 1 cut(s) 1183
Lsp1109I GCAGC 4 cut(s) 7, 46, 373, 1006
LweI GCATC 2 cut(s) 307, 1231
MaeI CTAG 2 cut(s) 308, 804
MaeII ACGT 1 cut(s) 575
MaeIII GTNAC 5 cut(s) 466, 603, 706, 908, 964
MalI GATC 4 cut(s) 792, 900, 1053, 1209
MboI GATC 4 cut(s) 790, 898, 1051, 1207
MboII GAAGA 6 cut(s) 249, 387, 415, 749, 1075, 1217
MhlI GDGCHC 2 cut(s) 412, 462
MluCI AATT 5 cut(s) 390, 496, 545, 592, 1113
MlyI GAGTC 1 cut(s) 638
MmeI TCCRAC 2 cut(s) 465, 1218
Mph1103I ATGCAT 1 cut(s) 1024
MroXI GAANNNNTTC 1 cut(s) 98
MseI TTAA 4 cut(s) 500, 513, 582, 971
MspA1I CMGCKG 1 cut(s) 997
MspI CCGG 2 cut(s) 179, 517
MspR9I CCNGG 1 cut(s) 179
MvnI CGCG 3 cut(s) 214, 346, 1188
MwoI GCNNNNNNNGC 4 cut(s) 56, 383, 416, 667
NciI CCSGG 1 cut(s) 179
NdeII GATC 4 cut(s) 790, 898, 1051, 1207
NlaIII CATG 4 cut(s) 275, 557, 895, 1135
NlaIV GGNNCC 4 cut(s) 162, 678, 762, 1101
NmuCI GTSAC 3 cut(s) 466, 706, 964
NsiI ATGCAT 1 cut(s) 1024
NspI RCATGY 2 cut(s) 275, 895
PciI ACATGT 1 cut(s) 891
PciSI GCTCTTC 1 cut(s) 1088
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 4 cut(s) 781, 814, 1174, 1192
PinAI ACCGGT 1 cut(s) 516
PkrI GCNGC 5 cut(s) 15, 22, 61, 388, 996
PleI GAGTC 1 cut(s) 637
PpsI GAGTC 1 cut(s) 637
PscI ACATGT 1 cut(s) 891
PspN4I GGNNCC 4 cut(s) 162, 678, 762, 1101
PspPI GGNCC 2 cut(s) 185, 283
PstI CTGCAG 1 cut(s) 996
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SapI GCTCTTC 1 cut(s) 1088
SaqAI TTAA 4 cut(s) 500, 513, 582, 971
SatI GCNGC 5 cut(s) 14, 21, 60, 387, 995
Sau3AI GATC 4 cut(s) 790, 898, 1051, 1207
Sau96I GGNCC 2 cut(s) 185, 283
ScaI AGTACT 1 cut(s) 68
SchI GAGTC 1 cut(s) 638
ScrFI CCNGG 1 cut(s) 179
SduI GDGCHC 2 cut(s) 412, 462
SfaNI GCATC 2 cut(s) 307, 1231
SfcI CTRYAG 1 cut(s) 992
SinI GGWCC 2 cut(s) 185, 283
Sse9I AATT 5 cut(s) 390, 496, 545, 592, 1113
SsiI CCGC 4 cut(s) 72, 236, 344, 997
SspI AATATT 1 cut(s) 325
SspMI CTAG 2 cut(s) 308, 804
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 771
TaaI ACNGT 2 cut(s) 955, 1140
TaiI ACGT 1 cut(s) 578
TaqI TCGA 2 cut(s) 116, 195
TasI AATT 5 cut(s) 390, 496, 545, 592, 1113
TatI WGTACW 1 cut(s) 66
TfiI GAWTC 4 cut(s) 781, 814, 1174, 1192
Tru1I TTAA 4 cut(s) 500, 513, 582, 971
Tru9I TTAA 4 cut(s) 500, 513, 582, 971
TscAI CASTG 2 cut(s) 510, 1171
TseFI GTSAC 3 cut(s) 466, 706, 964
TseI GCWGC 5 cut(s) 13, 20, 59, 386, 994
Tsp45I GTSAC 3 cut(s) 466, 706, 964
TspDTI ATGAA 5 cut(s) 328, 948, 960, 1099, 1134
TspGWI ACGGA 2 cut(s) 851, 1076
TspRI CASTG 2 cut(s) 510, 1171
VpaK11BI GGWCC 2 cut(s) 185, 283
XapI RAATTY 1 cut(s) 545
XbaI TCTAGA 1 cut(s) 307
XceI RCATGY 2 cut(s) 275, 895
XmiI GTMKAC 1 cut(s) 363
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 2 cut(s) 308, 804
ZrmI AGTACT 1 cut(s) 68
Zsp2I ATGCAT 1 cut(s) 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.