Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000992

Physical Location & Seq

Genomic Coordinates Forward (+)

24373360 .. 24374221

Gene Structure 862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0259700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGTCTCTTCGCTGAATTCATCTCCCTCATCCTCTTCACCAACACCTGGTCAGGTCTCTTCGCAGCTTTGCGGAGTTGATTATGATCTCACTTTCTCGATCAACTCCTCCGCGCCGCCACAGCCCACGGCTACGACGCCGTTTTACACCTCTCAATCACTGCCCTCGCTGTCTTCATACTTGTTCATCAGAATCGTCAGGGAGTGTGGACTCGCTGCGAACTGGAGCCCCTACATCAAGGTCGAGTTTGCGGACCTTGGTGCTGACGTGATCGGCGAGGTCGCATTTGAAGGTGATGTTGGAGAGGACTTGATCGGCATCAGACTTGACGATCTCGAGGACCTAAGAGGATTTCTGGAGATTGGAAAGATGTTTGTTGAGGTCGAAATGCTGAGAGAGGATGTTGTTGAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

138

Amino Acids

14.93

Weight (kDa)

4.05

Isoelectric Point (pI)

56.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09640 AT1G57720 AT1G57720
fragaria_vesca	FvH4_5g28250 FvH4_5g28250 FvH4_5g32590 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560
malus_domestica	MD08G1244100.v1.1 MD15G1403200.v1.1 MD15G1438400.v1.1
prunus_persica	Prupe.1G549300_v2.0.a1 Prupe.1G549300_v2.0.a1 Prupe.1G581500_v2.0.a1 Prupe.1G581500_v2.0.a1
pyrus_communis	pycom08g21180 pycom15g36060 pycom15g38640
rosa_chinensis	RchiOBHm_Chr7g0220411 RchiOBHm_Chr7g0229581 RchiOBHm_Chr7g0229711 RchiOBHm_Chr7g0230101 RchiOBHm_Chr7g0230191
rosa_laevigata	RLG00000001508 RLG00000001510
rosa_multiflora	Rmu_sc0000693.1_g000058 Rmu_sc0000851.1_g000010 Rmu_sc0001621.1_g000005 Rmu_sc0001918.1_g000014 Rmu_sc0002666.1_g000007 Rmu_sc0002822.1_g000020 Rmu_sc0002822.1_g000031 Rmu_sc0004110.1_g000004 Rmu_ssc0000189.1_g000051
rosa_roxburghii	Rroxscaffold_3G00230290 Rroxscaffold_3G00230310 Rroxscaffold_3G00239390
rosa_rugosa	Rorug07G0193900 Rorug07G0259200 Rorug07G0259700 Rorug07G0259900 Rorug07G0260000
rosa_samantha	Rh7AG334900 Rh7AG408700 Rh7AG409300 Rh7AG409800 Rh7BG325900 Rh7BG387800 Rh7BG388100 Rh7BG388200 Rh7BG388600 Rh7CG352600 Rh7CG427700
rosa_wichuraiana	Rw0G018580 Rw0G022570 Rw7G028550 Rw7G033930 Rw7G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	47
AccII	CGCG	1 cut(s)	113
AciI	CCGC	4 cut(s)	72, 111, 116, 251
AcsI	RAATTY	1 cut(s)	16
AcyI	GRCGYC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	47
AgsI	TTSAA	2 cut(s)	290, 410
AjiI	CACGTC	1 cut(s)	268
AjnI	CCWGG	1 cut(s)	46
AjuI	GAANNNNNNNTTGG	2 cut(s)	282, 314
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
Alw26I	GTCTC	2 cut(s)	10, 61
Ama87I	CYCGRG	1 cut(s)	335
ApeKI	GCWGC	2 cut(s)	64, 215
ApoI	RAATTY	1 cut(s)	16
AspLEI	GCGC	1 cut(s)	115
AspS9I	GGNCC	2 cut(s)	253, 340
AsuHPI	GGTGA	2 cut(s)	30, 305
AvaI	CYCGRG	1 cut(s)	335
AvaII	GGWCC	2 cut(s)	253, 340
BanII	GRGCYC	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	76, 202
BceAI	ACGGC	2 cut(s)	124, 144
BciT130I	CCWGG	1 cut(s)	48
BcoDI	GTCTC	2 cut(s)	10, 61
BisI	GCNGC	3 cut(s)	65, 116, 216
BlsI	GCNGC	3 cut(s)	66, 117, 217
Bme1390I	CCNGG	1 cut(s)	48
Bme18I	GGWCC	2 cut(s)	253, 340
BmeT110I	CYCGRG	1 cut(s)	335
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	2 cut(s)	253, 340
BmiI	GGNNCC	1 cut(s)	227
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	165
BpmI	CTGGAG	2 cut(s)	244, 377
BsaBI	GATNNNNATC	2 cut(s)	84, 317
BsaHI	GRCGYC	1 cut(s)	137
BsaI	GGTCTC	2 cut(s)	10, 61
BsaJI	CCNNGG	2 cut(s)	126, 256
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
Bse1I	ACTGG	1 cut(s)	227
Bse8I	GATNNNNATC	2 cut(s)	84, 317
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	2 cut(s)	126, 256
BseGI	GGATG	2 cut(s)	29, 406
BseJI	GATNNNNATC	2 cut(s)	84, 317
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	97
BseXI	GCAGC	2 cut(s)	76, 202
Bsh1236I	CGCG	1 cut(s)	113
BsiHKCI	CYCGRG	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	47
BsmAI	GTCTC	2 cut(s)	10, 61
Bso31I	GGTCTC	2 cut(s)	10, 61
BsoBI	CYCGRG	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	5 cut(s)	85, 99, 270, 312, 331
BspACI	CCGC	4 cut(s)	72, 111, 116, 251
BspCNI	CTCAG	1 cut(s)	384
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	227
BspTNI	GGTCTC	2 cut(s)	10, 61
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	126, 256
BssMI	GATC	5 cut(s)	85, 99, 270, 312, 331
BssNI	GRCGYC	1 cut(s)	137
BssT1I	CCWWGG	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	48
Bst6I	CTCTTC	3 cut(s)	13, 40, 64
BstACI	GRCGYC	1 cut(s)	137
BstDEI	CTNAG	2 cut(s)	344, 392
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	2 cut(s)	29, 406
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	5 cut(s)	88, 102, 273, 315, 334
BstMAI	GTCTC	2 cut(s)	10, 61
BstMBI	GATC	5 cut(s)	85, 99, 270, 312, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	2 cut(s)	76, 202
BstV2I	GAAGAC	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	126
BtrI	CACGTC	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	29, 406
BtsI	GCAGTG	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	158
CfoI	GCGC	1 cut(s)	115
Cfr13I	GGNCC	2 cut(s)	253, 340
CseI	GACGC	1 cut(s)	145
CsiI	ACCWGGT	1 cut(s)	46
CviJI	RGCY	4 cut(s)	67, 124, 131, 228
CviKI_1	RGCY	4 cut(s)	67, 124, 131, 228
DdeI	CTNAG	2 cut(s)	344, 392
DpnI	GATC	5 cut(s)	87, 101, 272, 314, 333
DpnII	GATC	5 cut(s)	85, 99, 270, 312, 331
Eam1104I	CTCTTC	3 cut(s)	13, 40, 64
EarI	CTCTTC	3 cut(s)	13, 40, 64
Eco130I	CCWWGG	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	230
Eco31I	GGTCTC	2 cut(s)	10, 61
Eco47I	GGWCC	2 cut(s)	253, 340
Eco88I	CYCGRG	1 cut(s)	335
EcoO109I	RGGNCCY	1 cut(s)	340
EcoRI	GAATTC	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	230
ErhI	CCWWGG	1 cut(s)	256
FaiI	YATR	2 cut(s)	84, 178
Fnu4HI	GCNGC	3 cut(s)	65, 116, 216
FokI	GGATG	2 cut(s)	16, 413
FriOI	GRGCYC	1 cut(s)	230
Fsp4HI	GCNGC	3 cut(s)	65, 116, 216
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	3 cut(s)	65, 116, 216
GsuI	CTGGAG	2 cut(s)	244, 377
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	115
Hin1I	GRCGYC	1 cut(s)	137
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HinfI	GANTC	2 cut(s)	192, 210
HphI	GGTGA	2 cut(s)	30, 305
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	2 cut(s)	191, 323
Hpy188III	TCNNGA	3 cut(s)	97, 335, 356
Hpy8I	GTNNAC	1 cut(s)	209
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	1 cut(s)	284
HpyCH4IV	ACGT	1 cut(s)	267
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	2 cut(s)	344, 392
HpySE526I	ACGT	1 cut(s)	267
Hsp92I	GRCGYC	1 cut(s)	137
HspAI	GCGC	1 cut(s)	113
Kzo9I	GATC	5 cut(s)	85, 99, 270, 312, 331
LmnI	GCTCC	1 cut(s)	225
LpnPI	CCDG	6 cut(s)	33, 38, 60, 184, 208, 341
Lsp1109I	GCAGC	2 cut(s)	76, 202
LweI	GCATC	1 cut(s)	327
MabI	ACCWGGT	1 cut(s)	46
MaeII	ACGT	1 cut(s)	267
MalI	GATC	5 cut(s)	87, 101, 272, 314, 333
MboI	GATC	5 cut(s)	85, 99, 270, 312, 331
MboII	GAAGA	3 cut(s)	27, 51, 165
MhlI	GDGCHC	1 cut(s)	230
MluCI	AATT	1 cut(s)	16
MlyI	GAGTC	1 cut(s)	204
MmeI	TCCRAC	1 cut(s)	280
MseI	TTAA	1 cut(s)	415
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	121
NdeII	GATC	5 cut(s)	85, 99, 270, 312, 331
NlaIV	GGNNCC	1 cut(s)	227
PaeR7I	CTCGAG	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	192
PflMI	CCANNNNNTGG	1 cut(s)	47
PkrI	GCNGC	3 cut(s)	66, 117, 217
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
PpuMI	RGGWCCY	1 cut(s)	340
Psp5II	RGGWCCY	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	227
PspPI	GGNCC	2 cut(s)	253, 340
PspPPI	RGGWCCY	1 cut(s)	340
SaqAI	TTAA	1 cut(s)	415
SatI	GCNGC	3 cut(s)	65, 116, 216
Sau3AI	GATC	5 cut(s)	85, 99, 270, 312, 331
Sau96I	GGNCC	2 cut(s)	253, 340
SchI	GAGTC	1 cut(s)	204
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	1 cut(s)	230
SexAI	ACCWGGT	1 cut(s)	46
SfaNI	GCATC	1 cut(s)	327
Sfr274I	CTCGAG	1 cut(s)	335
SinI	GGWCC	2 cut(s)	253, 340
SlaI	CTCGAG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	1 cut(s)	16
SsiI	CCGC	4 cut(s)	72, 111, 116, 251
StyD4I	CCNGG	1 cut(s)	46
StyI	CCWWGG	1 cut(s)	256
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	4 cut(s)	98, 243, 336, 384
TasI	AATT	1 cut(s)	16
TauI	GCSGC	1 cut(s)	118
TfiI	GAWTC	1 cut(s)	192
Tru1I	TTAA	1 cut(s)	415
Tru9I	TTAA	1 cut(s)	415
TscAI	CASTG	1 cut(s)	165
TseI	GCWGC	2 cut(s)	64, 215
TspDTI	ATGAA	3 cut(s)	9, 165, 175
TspRI	CASTG	1 cut(s)	165
Van91I	CCANNNNNTGG	1 cut(s)	47
VpaK11BI	GGWCC	2 cut(s)	253, 340
XapI	RAATTY	1 cut(s)	16
XhoI	CTCGAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.