Rroxscaffold_3G00230310

Elongation factor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
15138223 .. 15143007
4785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00230310.1

Sequence Viewer

Length: 1251 bp
ATGGCTTTGGTGCTGCACGCTGGAAACACCAATAAGAATGGTTACAAGGCACTTATTGCTGCTGAGTTCAGCGGTGTCAGTGTTGAGCTGGTGAAGGATTTCGAGATGGGTGTGTCGAACAAGAGTCCCGAGTTTCTCAAAATGAATCCCATTGGGAAGGTTCCTGTGTTGGAAACGCCGGACGGTCCTGTTTTTGAGAGCAATGCCATTGCGCGATATGGTGAGGGCTCGCTGTTAGGACTTTTGAAGTTGTATATAGAGAGTATTGCCCTTGTGGAGCAATGGATTGATTTTGCAACGTTAGAGATTGATGCCAATATTTTGCGTTGGTTCATACCACGTATCGGTTTTGCAGTCTACCTTCCTCCGGCTGAGGAAGCTGCAATTTCTTCCTTGAAGAGAGCACTAACTGCTTTGAACACTCATCTTGCTTCCAACACGTACTTAGTTGGGCACTCTGTGACATTGGCTGATATCATTATGATATGTAATTTAACACTGGGTTTTAACCGGTTGTTGACAAAAAGTTTTACCTCAGAATTTCCTCATGTTGAGAGATACTTTTGGACATTGGTTAATCAGCCTAATTTTTGCAAGATACTGGGTGAGGTGAAACAAGCTGAATCTGTTCCAGCTGTTCAGTCAAAGAAGCCTTCACAGCCTAAGGAACCTGCAAAGAAAGAGGCCAAGAAGGAAGTGAAGAAAGAACCAGCAAAGCCTAAAGTAGAAGAGGCTGCTCAGGAAGAGGAGGCGTCCAAGCCGAAGGCAAAGAATCCTCTTGATCTTTTGCCTCCTAGCAAGATGATTCTGGATGAATGGAAAAGGCTTTATTCAAACACAAAGACCAACTTCCGTGAGGTTGCTGTCAAAGGCTTCTGGGACATGTATGATCCAGAGGGTTACTCCCTTTGGTTTTGCAATTACAAGTACAACGATGAAAATACAGTTTCATTTGTGACTTTGAACAAGGTGGGTGGTTTTCTGCAGCGGATGGATTTGGCTCGTAAATATGCGTTTGGGAAGATGTTGGTGATTGGGTCTGATCCTCCTTTCAAGGTGAAGGGCTTGTGGCTGTTCCGTGGGCAAGAGGTTCCCCAGTTCATAATTGATGAATGTTATGACATGGAACTGTATGATTGGTGTAAGGTTGATATAACTGATGAGGATCAAAAGGAGCGCGTGAACCAGATGATTGAAGATCACGAGCCTTTTGAGGGGGAGGCTTTGTTGGATGCCAAATGCTTCAAGTGA

Protein Analysis

416

Amino Acids

47.17

Weight (kDa)

5.55

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 10 - 73 2.7e-13 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 16 - 73 1.2e-07 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 16 - 73 2.8e-06 Glutathione S-transferase, N-terminal domain
GST_C PF00043 126 - 195 2.3e-10 Glutathione S-transferase, C-terminal domain
EF1G PF00647 255 - 363 3e-42 Elongation factor 1 gamma, conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 679
AccI GTMKAC 1 cut(s) 357
AccII CGCG 2 cut(s) 214, 1179
AciI CCGC 2 cut(s) 72, 988
AclI AACGTT 1 cut(s) 299
AclWI GGATC 3 cut(s) 884, 1037, 1173
AcsI RAATTY 1 cut(s) 539
AcyI GRCGYC 1 cut(s) 752
AdeI CACNNNGTG 1 cut(s) 460
AfaI GTAC 2 cut(s) 443, 929
AfiI CCNNNNNNNGG 3 cut(s) 344, 367, 1214
AflIII ACRYGT 2 cut(s) 438, 882
AgeI ACCGGT 1 cut(s) 510
AgsI TTSAA 8 cut(s) 247, 397, 418, 834, 964, 1054, 1196, 1246
AluBI AGCT 4 cut(s) 88, 380, 620, 635
AluI AGCT 4 cut(s) 88, 380, 620, 635
Alw21I GWGCWC 1 cut(s) 406
AlwI GGATC 3 cut(s) 884, 1037, 1173
Ama87I CYCGRG 1 cut(s) 128
AoxI GGCC 1 cut(s) 684
ApeKI GCWGC 5 cut(s) 13, 59, 380, 734, 985
ApoI RAATTY 1 cut(s) 539
AsiGI ACCGGT 1 cut(s) 510
Asp700I GAANNNNTTC 2 cut(s) 98, 627
AspLEI GCGC 2 cut(s) 214, 1179
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 6 cut(s) 103, 233, 617, 622, 1042, 1069
AvaI CYCGRG 1 cut(s) 128
AvaII GGWCC 1 cut(s) 185
AxyI CCTNAGG 1 cut(s) 663
BaeGI GKGCMC 1 cut(s) 456
BanII GRGCYC 1 cut(s) 230
BauI CACGAG 1 cut(s) 1202
Bbv12I GWGCWC 1 cut(s) 406
BbvCI CCTCAGC 1 cut(s) 372
BbvI GCAGC 4 cut(s) 46, 367, 721, 997
BccI CCATC 2 cut(s) 100, 985
BfaI CTAG 1 cut(s) 795
BfmI CTRYAG 1 cut(s) 983
BfuAI ACCTGC 1 cut(s) 679
BisI GCNGC 5 cut(s) 14, 60, 381, 735, 986
BlsI GCNGC 5 cut(s) 15, 61, 382, 736, 987
Bme18I GGWCC 1 cut(s) 185
BmeT110I CYCGRG 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 3 cut(s) 162, 669, 1092
BmrI ACTGGG 3 cut(s) 509, 611, 1090
BmsI GCATC 2 cut(s) 301, 1222
BmuI ACTGGG 3 cut(s) 509, 611, 1090
BplI GAGNNNNNCTC 2 cut(s) 887, 919
Bpu10I CCTNAGC 2 cut(s) 372, 738
BsaAI YACGTR 2 cut(s) 341, 441
BsaBI GATNNNNATC 1 cut(s) 1164
BsaHI GRCGYC 1 cut(s) 752
BsaJI CCNNGG 1 cut(s) 1078
BsaWI WCCGGW 1 cut(s) 510
BsaXI ACNNNNNCTCC 2 cut(s) 1211, 1241
Bsc4I CCNNNNNNNGG 3 cut(s) 344, 367, 1214
Bse118I RCCGGY 1 cut(s) 510
Bse1I ACTGG 3 cut(s) 504, 606, 1096
Bse21I CCTNAGG 1 cut(s) 663
Bse3DI GCAATG 3 cut(s) 207, 208, 287
Bse8I GATNNNNATC 1 cut(s) 1164
BseDI CCNNGG 1 cut(s) 1078
BseGI GGATG 3 cut(s) 817, 996, 1237
BseJI GATNNNNATC 1 cut(s) 1164
BseLI CCNNNNNNNGG 3 cut(s) 344, 367, 1214
BseMI GCAATG 3 cut(s) 207, 208, 287
BseMII CTCAG 4 cut(s) 54, 363, 549, 752
BseNI ACTGG 3 cut(s) 504, 606, 1096
BseRI GAGGAG 1 cut(s) 761
BseSI GKGCMC 1 cut(s) 456
BseXI GCAGC 4 cut(s) 46, 367, 721, 997
Bsh1236I CGCG 2 cut(s) 214, 1179
BshFI GGCC 1 cut(s) 686
BshTI ACCGGT 1 cut(s) 510
BsiHKAI GWGCWC 1 cut(s) 406
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 3 cut(s) 179, 368, 511
BslFI GGGAC 2 cut(s) 111, 893
BslI CCNNNNNNNGG 3 cut(s) 344, 367, 1214
BsmFI GGGAC 2 cut(s) 111, 893
BsnI GGCC 1 cut(s) 686
BsoBI CYCGRG 1 cut(s) 128
Bsp1286I GDGCHC 3 cut(s) 230, 406, 456
Bsp143I GATC 5 cut(s) 781, 889, 1042, 1165, 1198
BspACI CCGC 2 cut(s) 72, 988
BspANI GGCC 1 cut(s) 686
BspCNI CTCAG 4 cut(s) 55, 364, 548, 751
BspFNI CGCG 2 cut(s) 214, 1179
BspLI GGNNCC 3 cut(s) 162, 669, 1092
BspMAI CTGCAG 1 cut(s) 987
BspMI ACCTGC 1 cut(s) 679
BspPI GGATC 3 cut(s) 884, 1037, 1173
BsrDI GCAATG 3 cut(s) 207, 208, 287
BsrFI RCCGGY 1 cut(s) 510
BsrI ACTGG 3 cut(s) 504, 606, 1096
BssAI RCCGGY 1 cut(s) 510
BssECI CCNNGG 1 cut(s) 1078
BssMI GATC 5 cut(s) 781, 889, 1042, 1165, 1198
BssNI GRCGYC 1 cut(s) 752
BssSI CACGAG 1 cut(s) 1202
Bst2BI CACGAG 1 cut(s) 1202
Bst4CI ACNGT 3 cut(s) 185, 946, 1131
Bst6I CTCTTC 3 cut(s) 392, 723, 738
BstACI GRCGYC 1 cut(s) 752
BstAPI GCANNNNNTGC 2 cut(s) 56, 410
BstBAI YACGTR 2 cut(s) 341, 441
BstC8I GCNNGC 2 cut(s) 18, 230
BstDEI CTNAG 6 cut(s) 63, 372, 445, 535, 663, 738
BstDSI CCRYGG 1 cut(s) 1078
BstF5I GGATG 3 cut(s) 817, 996, 1237
BstFNI CGCG 2 cut(s) 214, 1179
BstHHI GCGC 2 cut(s) 214, 1179
BstKTI GATC 5 cut(s) 784, 892, 1045, 1168, 1201
BstMBI GATC 5 cut(s) 781, 889, 1042, 1165, 1198
BstMWI GCNNNNNNNGC 4 cut(s) 56, 377, 410, 658
BstNSI RCATGY 1 cut(s) 886
BstSFI CTRYAG 1 cut(s) 983
BstSLI GKGCMC 1 cut(s) 456
BstUI CGCG 2 cut(s) 214, 1179
BstV1I GCAGC 4 cut(s) 46, 367, 721, 997
Bsu36I CCTNAGG 1 cut(s) 663
BsuRI GGCC 1 cut(s) 686
BtgI CCRYGG 1 cut(s) 1078
BtsCI GGATG 3 cut(s) 817, 996, 1237
BtsIMutI CAGTG 2 cut(s) 85, 497
BveI ACCTGC 1 cut(s) 679
Cac8I GCNNGC 2 cut(s) 18, 230
CfoI GCGC 2 cut(s) 214, 1179
Cfr10I RCCGGY 1 cut(s) 510
Cfr13I GGNCC 1 cut(s) 185
CseI GACGC 1 cut(s) 741
Csp6I GTAC 2 cut(s) 442, 928
CspAI ACCGGT 1 cut(s) 510
CspCI CAANNNNNGTGG 2 cut(s) 955, 990
CviAII CATG 3 cut(s) 548, 883, 1123
CviQI GTAC 2 cut(s) 442, 928
DdeI CTNAG 6 cut(s) 63, 372, 445, 535, 663, 738
DpnI GATC 5 cut(s) 783, 891, 1044, 1167, 1200
DpnII GATC 5 cut(s) 781, 889, 1042, 1165, 1198
DraIII CACNNNGTG 1 cut(s) 460
Eam1104I CTCTTC 3 cut(s) 392, 723, 738
EarI CTCTTC 3 cut(s) 392, 723, 738
Eco24I GRGCYC 1 cut(s) 230
Eco32I GATATC 1 cut(s) 475
Eco47I GGWCC 1 cut(s) 185
Eco81I CCTNAGG 1 cut(s) 663
Eco88I CYCGRG 1 cut(s) 128
EcoRV GATATC 1 cut(s) 475
EcoT38I GRGCYC 1 cut(s) 230
FaeI CATG 3 cut(s) 551, 886, 1126
FalI AAGNNNNNCTT 2 cut(s) 833, 865
FaqI GGGAC 2 cut(s) 111, 893
FatI CATG 3 cut(s) 547, 882, 1122
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 5 cut(s) 14, 60, 381, 735, 986
FokI GGATG 3 cut(s) 824, 1003, 1244
FriOI GRGCYC 1 cut(s) 230
Fsp4HI GCNGC 5 cut(s) 14, 60, 381, 735, 986
FspBI CTAG 1 cut(s) 795
GlaI GCGC 2 cut(s) 213, 1178
GluI GCNGC 5 cut(s) 14, 60, 381, 735, 986
HaeIII GGCC 1 cut(s) 686
HapII CCGG 3 cut(s) 179, 368, 511
HgaI GACGC 1 cut(s) 741
HhaI GCGC 2 cut(s) 214, 1179
Hin1I GRCGYC 1 cut(s) 752
Hin1II CATG 3 cut(s) 551, 886, 1126
Hin6I GCGC 2 cut(s) 212, 1177
HinP1I GCGC 2 cut(s) 212, 1177
HincII GTYRAC 1 cut(s) 519
HindII GTYRAC 1 cut(s) 519
HinfI GANTC 5 cut(s) 124, 145, 623, 772, 805
HpaII CCGG 3 cut(s) 179, 368, 511
HphI GGTGA 6 cut(s) 103, 233, 617, 622, 1042, 1069
Hpy166II GTNNAC 3 cut(s) 358, 519, 1183
Hpy188I TCNGA 2 cut(s) 538, 1042
Hpy188III TCNNGA 7 cut(s) 103, 128, 740, 779, 809, 893, 1202
Hpy8I GTNNAC 3 cut(s) 358, 519, 1183
HpyAV CCTTC 7 cut(s) 88, 151, 371, 663, 685, 757, 1054
HpyCH4III ACNGT 3 cut(s) 185, 946, 1131
HpyCH4IV ACGT 3 cut(s) 299, 340, 440
HpyCH4V TGCA 8 cut(s) 16, 296, 353, 383, 594, 674, 918, 985
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 377, 410, 658
HpyF3I CTNAG 6 cut(s) 63, 372, 445, 535, 663, 738
HpySE526I ACGT 3 cut(s) 299, 340, 440
Hsp92I GRCGYC 1 cut(s) 752
Hsp92II CATG 3 cut(s) 551, 886, 1126
HspAI GCGC 2 cut(s) 212, 1177
Kzo9I GATC 5 cut(s) 781, 889, 1042, 1165, 1198
LmnI GCTCC 2 cut(s) 277, 1174
Lsp1109I GCAGC 4 cut(s) 46, 367, 721, 997
LweI GCATC 2 cut(s) 301, 1222
MaeI CTAG 1 cut(s) 795
MaeII ACGT 3 cut(s) 299, 340, 440
MaeIII GTNAC 4 cut(s) 41, 460, 899, 955
MalI GATC 5 cut(s) 783, 891, 1044, 1167, 1200
MboI GATC 5 cut(s) 781, 889, 1042, 1165, 1198
MboII GAAGA 7 cut(s) 381, 409, 712, 740, 755, 1033, 1208
MhlI GDGCHC 3 cut(s) 230, 406, 456
MluCI AATT 6 cut(s) 384, 490, 539, 586, 919, 1104
MlyI GAGTC 1 cut(s) 133
MmeI TCCRAC 3 cut(s) 150, 459, 1209
MroXI GAANNNNTTC 2 cut(s) 98, 627
MseI TTAA 3 cut(s) 494, 507, 576
MspA1I CMGCKG 3 cut(s) 72, 635, 988
MspI CCGG 3 cut(s) 179, 368, 511
MvnI CGCG 2 cut(s) 214, 1179
MwoI GCNNNNNNNGC 4 cut(s) 56, 377, 410, 658
NdeII GATC 5 cut(s) 781, 889, 1042, 1165, 1198
NlaIII CATG 3 cut(s) 551, 886, 1126
NlaIV GGNNCC 3 cut(s) 162, 669, 1092
NmuCI GTSAC 2 cut(s) 460, 955
NspI RCATGY 1 cut(s) 886
PciI ACATGT 1 cut(s) 882
PdmI GAANNNNTTC 2 cut(s) 98, 627
PfeI GAWTC 4 cut(s) 145, 623, 772, 805
PinAI ACCGGT 1 cut(s) 510
PkrI GCNGC 5 cut(s) 15, 61, 382, 736, 987
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
Ppu21I YACGTR 2 cut(s) 341, 441
PscI ACATGT 1 cut(s) 882
Psp1406I AACGTT 1 cut(s) 299
PspN4I GGNNCC 3 cut(s) 162, 669, 1092
PspPI GGNCC 1 cut(s) 185
PstI CTGCAG 1 cut(s) 987
PvuII CAGCTG 1 cut(s) 635
RsaI GTAC 2 cut(s) 443, 929
RsaNI GTAC 2 cut(s) 442, 928
SaqAI TTAA 3 cut(s) 494, 507, 576
SatI GCNGC 5 cut(s) 14, 60, 381, 735, 986
Sau3AI GATC 5 cut(s) 781, 889, 1042, 1165, 1198
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 1 cut(s) 133
SduI GDGCHC 3 cut(s) 230, 406, 456
SfaNI GCATC 2 cut(s) 301, 1222
SfcI CTRYAG 1 cut(s) 983
SinI GGWCC 1 cut(s) 185
Sse9I AATT 6 cut(s) 384, 490, 539, 586, 919, 1104
SsiI CCGC 2 cut(s) 72, 988
SspI AATATT 1 cut(s) 319
SspMI CTAG 1 cut(s) 795
TaaI ACNGT 3 cut(s) 185, 946, 1131
TaiI ACGT 3 cut(s) 302, 343, 443
TaqI TCGA 2 cut(s) 102, 116
TasI AATT 6 cut(s) 384, 490, 539, 586, 919, 1104
TatI WGTACW 1 cut(s) 927
TfiI GAWTC 4 cut(s) 145, 623, 772, 805
Tru1I TTAA 3 cut(s) 494, 507, 576
Tru9I TTAA 3 cut(s) 494, 507, 576
TscAI CASTG 2 cut(s) 85, 504
TseFI GTSAC 2 cut(s) 460, 955
TseI GCWGC 5 cut(s) 13, 59, 380, 734, 985
Tsp45I GTSAC 2 cut(s) 460, 955
TspDTI ATGAA 7 cut(s) 158, 322, 828, 939, 951, 1090, 1125
TspGWI ACGGA 2 cut(s) 842, 1067
TspRI CASTG 2 cut(s) 85, 504
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 1 cut(s) 539
XceI RCATGY 1 cut(s) 886
XmiI GTMKAC 1 cut(s) 357
XmnI GAANNNNTTC 2 cut(s) 98, 627
XspI CTAG 1 cut(s) 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.