Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002822.1

Orthogroup ID

OG0000992

Physical Location & Seq

Genomic Coordinates Forward (+)

82499 .. 85102

Gene Structure 2604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002822.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

atgtctctggtgttgcatgattggaagaccaataaaaatggttgcaaggcacgtattgctgccgagtacagtggtgtgaaccttgaattggtgaaaataattgagatggggatgtccaataagactgccaattttctcaaattgacccctattgggaagcttcctttgttagaaacacctgttggtcctgtttttgagagcaatgccattgcacgctatgattttgcatctttggagattgatgccaatatgttgcgatggttgaaacagcgtatgggttatgctgtttaccttcctctggatgaggaagcggcaatttcttccttgaagagagcactaactgctttgaacattcatcttgcttccaacacgtacctggttgggcattctatcacgttggctgatatcattatgacatgtaatctgaagccgggatttagtcagttattaacaaaaagttttacatctgaatttcctcatgttgagagatacttttggacattggttaatcttcctaattgttgcaagatattgggggaggtgaaacaagcagaatctattccagctgttcagttagtgatgaagccttcacagcctaaggaatcttcagaaacaaaggtcaaggttcagacgaataaagaggccaagaaagaaccaacagaacctaaagtagaagaggaggcacccaagcccaaggcaaagaatcctcttgatcttttgcctcctagcaagatgatactggatgaatggaaaagacttccttcaaacacaaagaccaacttccgtgagcaaatggatttggctcgtaagtatgcttttgggaagatgttggtgattggctctgagccttctttcaaggtgaagggcttgtggctgttccacaggcaagaaattccgcagttcataatggatgagtgttatgacatgaaactgtatgattggcggaaggttgatatcacatatgaggatcaaaaagagcgtgtgaatcagatgattgaagatcatgagccctttgagggggagccattgttggatgccaaatgtttcaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

350

Amino Acids

40.04

Weight (kDa)

7.58

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09640 AT1G57720 AT1G57720
fragaria_vesca	FvH4_5g28250 FvH4_5g28250 FvH4_5g32590 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560
malus_domestica	MD08G1244100.v1.1 MD15G1403200.v1.1 MD15G1438400.v1.1
prunus_persica	Prupe.1G549300_v2.0.a1 Prupe.1G549300_v2.0.a1 Prupe.1G581500_v2.0.a1 Prupe.1G581500_v2.0.a1
pyrus_communis	pycom08g21180 pycom15g36060 pycom15g38640
rosa_chinensis	RchiOBHm_Chr7g0220411 RchiOBHm_Chr7g0229581 RchiOBHm_Chr7g0229711 RchiOBHm_Chr7g0230101 RchiOBHm_Chr7g0230191
rosa_laevigata	RLG00000001508 RLG00000001510
rosa_multiflora	Rmu_sc0000693.1_g000058 Rmu_sc0000851.1_g000010 Rmu_sc0001621.1_g000005 Rmu_sc0001918.1_g000014 Rmu_sc0002666.1_g000007 Rmu_sc0002822.1_g000020 Rmu_sc0002822.1_g000031 Rmu_sc0004110.1_g000004 Rmu_ssc0000189.1_g000051
rosa_roxburghii	Rroxscaffold_3G00230290 Rroxscaffold_3G00230310 Rroxscaffold_3G00239390
rosa_rugosa	Rorug07G0193900 Rorug07G0259200 Rorug07G0259700 Rorug07G0259900 Rorug07G0260000
rosa_samantha	Rh7AG334900 Rh7AG408700 Rh7AG409300 Rh7AG409800 Rh7BG325900 Rh7BG387800 Rh7BG388100 Rh7BG388200 Rh7BG388600 Rh7CG352600 Rh7CG427700
rosa_wichuraiana	Rw0G018580 Rw0G022570 Rw7G028550 Rw7G033930 Rw7G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	682
AciI	CCGC	3 cut(s)	311, 896, 943
AclWI	GGATC	1 cut(s)	975
AcsI	RAATTY	2 cut(s)	470, 891
AcuI	CTGAAG	2 cut(s)	446, 591
AfaI	GTAC	2 cut(s)	68, 374
AfiI	CCNNNNNNNGG	5 cut(s)	88, 153, 298, 1016, 1017
AflIII	ACRYGT	2 cut(s)	369, 416
AgsI	TTSAA	8 cut(s)	86, 265, 328, 349, 765, 856, 998, 1048
AjnI	CCWGG	1 cut(s)	375
AjuI	GAANNNNNNNTTGG	4 cut(s)	71, 103, 165, 197
AluBI	AGCT	2 cut(s)	160, 566
AluI	AGCT	2 cut(s)	160, 566
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	975
AoxI	GGCC	1 cut(s)	642
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	2 cut(s)	470, 891
Asp700I	GAANNNNTTC	1 cut(s)	558
AspS9I	GGNCC	1 cut(s)	185
AsuC2I	CCSGG	1 cut(s)	432
AsuHPI	GGTGA	4 cut(s)	103, 553, 844, 871
AvaII	GGWCC	1 cut(s)	185
AxyI	CCTNAGG	1 cut(s)	597
BanI	GGYRCC	1 cut(s)	682
BanII	GRGCYC	1 cut(s)	1011
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	2 cut(s)	100, 252
BciT130I	CCWGG	1 cut(s)	377
BcnI	CCSGG	1 cut(s)	432
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	726
BisI	GCNGC	2 cut(s)	60, 312
BlsI	GCNGC	2 cut(s)	61, 313
Bme1390I	CCNGG	2 cut(s)	377, 432
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	2 cut(s)	684, 1023
BmrFI	CCNGG	2 cut(s)	377, 432
BmsI	GCATC	3 cut(s)	232, 236, 1024
BpiI	GAAGAC	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	432
BsaAI	YACGTR	2 cut(s)	53, 372
BsaJI	CCNNGG	1 cut(s)	693
BsaXI	ACNNNNNCTCC	2 cut(s)	1013, 1043
Bsc4I	CCNNNNNNNGG	5 cut(s)	88, 153, 298, 1016, 1017
Bse1I	ACTGG	1 cut(s)	744
Bse21I	CCTNAGG	1 cut(s)	597
Bse3DI	GCAATG	2 cut(s)	207, 208
BseBI	CCWGG	1 cut(s)	377
BseDI	CCNNGG	1 cut(s)	693
BseGI	GGATG	5 cut(s)	117, 307, 748, 916, 1039
BseLI	CCNNNNNNNGG	5 cut(s)	88, 153, 298, 1016, 1017
BseMI	GCAATG	2 cut(s)	207, 208
BseMII	CTCAG	1 cut(s)	834
BseNI	ACTGG	1 cut(s)	744
BseRI	GAGGAG	1 cut(s)	692
BseXI	GCAGC	1 cut(s)	46
BshFI	GGCC	1 cut(s)	644
BshNI	GGYRCC	1 cut(s)	682
BsiHKAI	GWGCWC	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	431
BslI	CCNNNNNNNGG	5 cut(s)	88, 153, 298, 1016, 1017
BsmAI	GTCTC	1 cut(s)	9
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	1 cut(s)	644
Bsp1286I	GDGCHC	2 cut(s)	337, 1011
Bsp143I	GATC	3 cut(s)	712, 967, 1000
BspACI	CCGC	3 cut(s)	311, 896, 943
BspANI	GGCC	1 cut(s)	644
BspCNI	CTCAG	1 cut(s)	835
BspHI	TCATGA	1 cut(s)	1003
BspLI	GGNNCC	2 cut(s)	684, 1023
BspPI	GGATC	1 cut(s)	975
BspT107I	GGYRCC	1 cut(s)	682
BsrDI	GCAATG	2 cut(s)	207, 208
BsrI	ACTGG	1 cut(s)	744
BssECI	CCNNGG	1 cut(s)	693
BssMI	GATC	3 cut(s)	712, 967, 1000
BssT1I	CCWWGG	1 cut(s)	693
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	2 cut(s)	71, 933
Bst6I	CTCTTC	2 cut(s)	323, 669
BstAPI	GCANNNNNTGC	2 cut(s)	56, 341
BstBAI	YACGTR	2 cut(s)	53, 372
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	2 cut(s)	597, 843
BstF5I	GGATG	5 cut(s)	117, 307, 748, 916, 1039
BstKTI	GATC	3 cut(s)	715, 970, 1003
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	712, 967, 1000
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 341, 592
BstNI	CCWGG	1 cut(s)	377
BstNSI	RCATGY	1 cut(s)	420
BstSCI	CCNGG	2 cut(s)	375, 430
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	1 cut(s)	32
Bsu36I	CCTNAGG	1 cut(s)	597
BsuRI	GGCC	1 cut(s)	644
BtgZI	GCGATG	1 cut(s)	271
BtsCI	GGATG	5 cut(s)	117, 307, 748, 916, 1039
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	214
CciI	TCATGA	1 cut(s)	1003
Cfr13I	GGNCC	1 cut(s)	185
CsiI	ACCWGGT	1 cut(s)	375
Csp6I	GTAC	2 cut(s)	67, 373
CviAII	CATG	5 cut(s)	17, 417, 479, 925, 1004
CviQI	GTAC	2 cut(s)	67, 373
DdeI	CTNAG	2 cut(s)	597, 843
DpnI	GATC	3 cut(s)	714, 969, 1002
DpnII	GATC	3 cut(s)	712, 967, 1000
Eam1104I	CTCTTC	2 cut(s)	323, 669
EarI	CTCTTC	2 cut(s)	323, 669
EciI	GGCGGA	1 cut(s)	958
Eco130I	CCWWGG	1 cut(s)	693
Eco24I	GRGCYC	1 cut(s)	1011
Eco32I	GATATC	2 cut(s)	406, 955
Eco47I	GGWCC	1 cut(s)	185
Eco57I	CTGAAG	2 cut(s)	446, 591
Eco81I	CCTNAGG	1 cut(s)	597
EcoRII	CCWGG	1 cut(s)	375
EcoRV	GATATC	2 cut(s)	406, 955
EcoT14I	CCWWGG	1 cut(s)	693
EcoT38I	GRGCYC	1 cut(s)	1011
ErhI	CCWWGG	1 cut(s)	693
FaeI	CATG	5 cut(s)	20, 420, 482, 928, 1007
FalI	AAGNNNNNCTT	4 cut(s)	745, 777, 764, 796
FatI	CATG	5 cut(s)	16, 416, 478, 924, 1003
FauNDI	CATATG	1 cut(s)	961
Fnu4HI	GCNGC	2 cut(s)	60, 312
FokI	GGATG	5 cut(s)	124, 314, 755, 923, 1046
FriOI	GRGCYC	1 cut(s)	1011
Fsp4HI	GCNGC	2 cut(s)	60, 312
FspBI	CTAG	1 cut(s)	726
GluI	GCNGC	2 cut(s)	60, 312
HaeIII	GGCC	1 cut(s)	644
HapII	CCGG	1 cut(s)	431
Hin1II	CATG	5 cut(s)	20, 420, 482, 928, 1007
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	4 cut(s)	554, 602, 703, 985
HpaII	CCGG	1 cut(s)	431
HphI	GGTGA	4 cut(s)	103, 553, 844, 871
Hpy166II	GTNNAC	2 cut(s)	79, 289
Hpy188I	TCNGA	6 cut(s)	426, 469, 610, 630, 844, 990
Hpy188III	TCNNGA	3 cut(s)	299, 710, 1004
Hpy8I	GTNNAC	2 cut(s)	79, 289
HpyAV	CCTTC	6 cut(s)	302, 597, 771, 856, 858, 940
HpyCH4III	ACNGT	2 cut(s)	71, 933
HpyCH4IV	ACGT	3 cut(s)	52, 371, 395
HpyCH4V	TGCA	5 cut(s)	16, 45, 212, 227, 525
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 341, 592
HpyF3I	CTNAG	2 cut(s)	597, 843
HpySE526I	ACGT	3 cut(s)	52, 371, 395
Hsp92II	CATG	5 cut(s)	20, 420, 482, 928, 1007
Kzo9I	GATC	3 cut(s)	712, 967, 1000
LmnI	GCTCC	1 cut(s)	1021
LpnPI	CCDG	9 cut(s)	192, 201, 284, 362, 389, 444, 576, 725, 868
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	3 cut(s)	232, 236, 1024
MabI	ACCWGGT	1 cut(s)	375
MaeI	CTAG	1 cut(s)	726
MaeII	ACGT	3 cut(s)	52, 371, 395
MalI	GATC	3 cut(s)	714, 969, 1002
MboI	GATC	3 cut(s)	712, 967, 1000
MboII	GAAGA	8 cut(s)	37, 312, 340, 503, 597, 686, 835, 1010
MhlI	GDGCHC	2 cut(s)	337, 1011
MluCI	AATT	8 cut(s)	86, 99, 130, 140, 315, 470, 517, 891
MmeI	TCCRAC	2 cut(s)	390, 1011
MroXI	GAANNNNTTC	1 cut(s)	558
MseI	TTAA	2 cut(s)	449, 507
MspA1I	CMGCKG	1 cut(s)	566
MspI	CCGG	1 cut(s)	431
MspR9I	CCNGG	2 cut(s)	377, 432
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	3 cut(s)	56, 341, 592
NciI	CCSGG	1 cut(s)	432
NdeI	CATATG	1 cut(s)	961
NdeII	GATC	3 cut(s)	712, 967, 1000
NlaIII	CATG	5 cut(s)	20, 420, 482, 928, 1007
NlaIV	GGNNCC	2 cut(s)	684, 1023
NmeAIII	GCCGAG	1 cut(s)	88
NspI	RCATGY	1 cut(s)	420
PagI	TCATGA	1 cut(s)	1003
PciI	ACATGT	1 cut(s)	416
PctI	GAATGC	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	558
PfeI	GAWTC	4 cut(s)	554, 602, 703, 985
PkrI	GCNGC	2 cut(s)	61, 313
Ppu21I	YACGTR	2 cut(s)	53, 372
PscI	ACATGT	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	2 cut(s)	684, 1023
PspPI	GGNCC	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	566
RsaI	GTAC	2 cut(s)	68, 374
RsaNI	GTAC	2 cut(s)	67, 373
SaqAI	TTAA	2 cut(s)	449, 507
SatI	GCNGC	2 cut(s)	60, 312
Sau3AI	GATC	3 cut(s)	712, 967, 1000
Sau96I	GGNCC	1 cut(s)	185
ScrFI	CCNGG	2 cut(s)	377, 432
SduI	GDGCHC	2 cut(s)	337, 1011
SexAI	ACCWGGT	1 cut(s)	375
SfaNI	GCATC	3 cut(s)	232, 236, 1024
SinI	GGWCC	1 cut(s)	185
Sse9I	AATT	8 cut(s)	86, 99, 130, 140, 315, 470, 517, 891
SsiI	CCGC	3 cut(s)	311, 896, 943
SspMI	CTAG	1 cut(s)	726
StyD4I	CCNGG	2 cut(s)	375, 430
StyI	CCWWGG	1 cut(s)	693
TaaI	ACNGT	2 cut(s)	71, 933
TaiI	ACGT	3 cut(s)	55, 374, 398
TasI	AATT	8 cut(s)	86, 99, 130, 140, 315, 470, 517, 891
TatI	WGTACW	1 cut(s)	66
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	4 cut(s)	554, 602, 703, 985
Tru1I	TTAA	2 cut(s)	449, 507
Tru9I	TTAA	2 cut(s)	449, 507
TscAI	CASTG	1 cut(s)	76
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	5 cut(s)	344, 596, 759, 892, 941
TspGWI	ACGGA	1 cut(s)	773
TspRI	CASTG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	2 cut(s)	470, 891
XceI	RCATGY	1 cut(s)	420
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XmnI	GAANNNNTTC	1 cut(s)	558
XspI	CTAG	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.