Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000693.1

Orthogroup ID

OG0000992

Physical Location & Seq

Genomic Coordinates Reverse (-)

292133 .. 293125

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000693.1_g000058.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atgctttcacttgctgcagttactcttttatttgtaaagtttctgtatgtctcctcaacgttcgcccttgtggagcaatggattgattttgcaacgttagagattgatgccaatattttgcgttggttcataccacgtatcggttttgcagtctaccttcctccggctgaggaagctgcaatttcttccttgaagagagcactaactgctttgaacactcatcttgcttccaacacgtacttagttggacactctgtgacattggctgatatcattatgatatgtaatttaacactgggttttaaccggttgttgacaaaaagttttacctcagaatttcctcatgttgagagatacttttggacattggttaatcagcctaattttcgcaagatactgggtgagcctaaggaacctgcaaagaaagaggccaagaaggaagtgaagaaagaaccagcaaagcctaaagtagaacaggctgctcaggaagaggaggcgcccaagcccaaggcaaagaatcctctcgatcttttgcctcctagcaagatgattctggatgaatggaaaggctttattcaaacacaaagaccaacttccgtgaggttgctgtcaaaggtgattccttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

209

Amino Acids

23.7

Weight (kDa)

9.34

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09640 AT1G57720 AT1G57720
fragaria_vesca	FvH4_5g28250 FvH4_5g28250 FvH4_5g32590 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560
malus_domestica	MD08G1244100.v1.1 MD15G1403200.v1.1 MD15G1438400.v1.1
prunus_persica	Prupe.1G549300_v2.0.a1 Prupe.1G549300_v2.0.a1 Prupe.1G581500_v2.0.a1 Prupe.1G581500_v2.0.a1
pyrus_communis	pycom08g21180 pycom15g36060 pycom15g38640
rosa_chinensis	RchiOBHm_Chr7g0220411 RchiOBHm_Chr7g0229581 RchiOBHm_Chr7g0229711 RchiOBHm_Chr7g0230101 RchiOBHm_Chr7g0230191
rosa_laevigata	RLG00000001508 RLG00000001510
rosa_multiflora	Rmu_sc0000693.1_g000058 Rmu_sc0000851.1_g000010 Rmu_sc0001621.1_g000005 Rmu_sc0001918.1_g000014 Rmu_sc0002666.1_g000007 Rmu_sc0002822.1_g000020 Rmu_sc0002822.1_g000031 Rmu_sc0004110.1_g000004 Rmu_ssc0000189.1_g000051
rosa_roxburghii	Rroxscaffold_3G00230290 Rroxscaffold_3G00230310 Rroxscaffold_3G00239390
rosa_rugosa	Rorug07G0193900 Rorug07G0259200 Rorug07G0259700 Rorug07G0259900 Rorug07G0260000
rosa_samantha	Rh7AG334900 Rh7AG408700 Rh7AG409300 Rh7AG409800 Rh7BG325900 Rh7BG387800 Rh7BG388100 Rh7BG388200 Rh7BG388600 Rh7CG352600 Rh7CG427700
rosa_wichuraiana	Rw0G018580 Rw0G022570 Rw7G028550 Rw7G033930 Rw7G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	424
AccB1I	GGYRCC	1 cut(s)	496
AccI	GTMKAC	1 cut(s)	153
AclI	AACGTT	2 cut(s)	59, 95
AcsI	RAATTY	1 cut(s)	335
AcyI	GRCGYC	1 cut(s)	497
AdeI	CACNNNGTG	1 cut(s)	256
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	2 cut(s)	140, 163
AflIII	ACRYGT	1 cut(s)	234
AgeI	ACCGGT	1 cut(s)	306
AgsI	TTSAA	3 cut(s)	193, 214, 578
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	55
AoxI	GGCC	1 cut(s)	429
ApeKI	GCWGC	3 cut(s)	14, 176, 479
ApoI	RAATTY	1 cut(s)	335
AsiGI	ACCGGT	1 cut(s)	306
AspLEI	GCGC	1 cut(s)	499
AsuHPI	GGTGA	2 cut(s)	413, 628
AxyI	CCTNAGG	1 cut(s)	408
BanI	GGYRCC	1 cut(s)	496
Bbv12I	GWGCWC	1 cut(s)	202
BbvCI	CCTCAGC	1 cut(s)	168
BbvI	GCAGC	2 cut(s)	163, 466
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	540
BfmI	CTRYAG	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	500
BfuAI	ACCTGC	1 cut(s)	424
BisI	GCNGC	3 cut(s)	15, 177, 480
BlsI	GCNGC	3 cut(s)	16, 178, 481
BmiI	GGNNCC	2 cut(s)	414, 498
BmrI	ACTGGG	2 cut(s)	305, 407
BmsI	GCATC	1 cut(s)	97
BmuI	ACTGGG	2 cut(s)	305, 407
Bpu10I	CCTNAGC	2 cut(s)	168, 483
BsaAI	YACGTR	2 cut(s)	137, 237
BsaHI	GRCGYC	1 cut(s)	497
BsaJI	CCNNGG	1 cut(s)	507
BsaWI	WCCGGW	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 163
Bse118I	RCCGGY	1 cut(s)	306
Bse1I	ACTGG	2 cut(s)	300, 402
Bse21I	CCTNAGG	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	507
BseGI	GGATG	1 cut(s)	562
BseLI	CCNNNNNNNGG	2 cut(s)	140, 163
BseMI	GCAATG	1 cut(s)	83
BseMII	CTCAG	3 cut(s)	159, 345, 497
BseNI	ACTGG	2 cut(s)	300, 402
BseRI	GAGGAG	2 cut(s)	43, 506
BseXI	GCAGC	2 cut(s)	163, 466
BshFI	GGCC	1 cut(s)	431
BshNI	GGYRCC	1 cut(s)	496
BshTI	ACCGGT	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	202
BsiSI	CCGG	2 cut(s)	164, 307
BslI	CCNNNNNNNGG	2 cut(s)	140, 163
BsmAI	GTCTC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	431
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	1 cut(s)	526
BspANI	GGCC	1 cut(s)	431
BspCNI	CTCAG	3 cut(s)	160, 344, 496
BspLI	GGNNCC	2 cut(s)	414, 498
BspMAI	CTGCAG	1 cut(s)	19
BspMI	ACCTGC	1 cut(s)	424
BspT107I	GGYRCC	1 cut(s)	496
BsrDI	GCAATG	1 cut(s)	83
BsrFI	RCCGGY	1 cut(s)	306
BsrI	ACTGG	2 cut(s)	300, 402
BssAI	RCCGGY	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	1 cut(s)	526
BssNI	GRCGYC	1 cut(s)	497
BssT1I	CCWWGG	1 cut(s)	507
Bst6I	CTCTTC	2 cut(s)	188, 483
BstACI	GRCGYC	1 cut(s)	497
BstAPI	GCANNNNNTGC	1 cut(s)	206
BstBAI	YACGTR	2 cut(s)	137, 237
BstDEI	CTNAG	5 cut(s)	168, 241, 331, 408, 483
BstF5I	GGATG	1 cut(s)	562
BstH2I	RGCGCY	1 cut(s)	500
BstHHI	GCGC	1 cut(s)	499
BstKTI	GATC	1 cut(s)	529
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	526
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 206
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	2 cut(s)	163, 466
Bsu36I	CCTNAGG	1 cut(s)	408
BsuRI	GGCC	1 cut(s)	431
BtsCI	GGATG	1 cut(s)	562
BtsIMutI	CAGTG	1 cut(s)	293
BveI	ACCTGC	1 cut(s)	424
CfoI	GCGC	1 cut(s)	499
Cfr10I	RCCGGY	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	238
CspAI	ACCGGT	1 cut(s)	306
CviAII	CATG	1 cut(s)	344
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	5 cut(s)	168, 241, 331, 408, 483
DinI	GGCGCC	1 cut(s)	498
DpnI	GATC	1 cut(s)	528
DpnII	GATC	1 cut(s)	526
DraIII	CACNNNGTG	1 cut(s)	256
Eam1104I	CTCTTC	2 cut(s)	188, 483
EarI	CTCTTC	2 cut(s)	188, 483
Eco130I	CCWWGG	1 cut(s)	507
Eco32I	GATATC	1 cut(s)	271
Eco81I	CCTNAGG	1 cut(s)	408
EcoRV	GATATC	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	507
EgeI	GGCGCC	1 cut(s)	498
EheI	GGCGCC	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	1 cut(s)	347
FaiI	YATR	5 cut(s)	48, 131, 278, 283, 345
FalI	AAGNNNNNCTT	2 cut(s)	577, 609
FatI	CATG	1 cut(s)	343
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	3 cut(s)	15, 177, 480
FokI	GGATG	1 cut(s)	569
Fsp4HI	GCNGC	3 cut(s)	15, 177, 480
FspBI	CTAG	1 cut(s)	540
GlaI	GCGC	1 cut(s)	498
GluI	GCNGC	3 cut(s)	15, 177, 480
HaeII	RGCGCY	1 cut(s)	500
HaeIII	GGCC	1 cut(s)	431
HapII	CCGG	2 cut(s)	164, 307
HhaI	GCGC	1 cut(s)	499
Hin1I	GRCGYC	1 cut(s)	497
Hin1II	CATG	1 cut(s)	347
Hin6I	GCGC	1 cut(s)	497
HinP1I	GCGC	1 cut(s)	497
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HinfI	GANTC	3 cut(s)	517, 550, 619
HpaII	CCGG	2 cut(s)	164, 307
HphI	GGTGA	2 cut(s)	413, 628
Hpy166II	GTNNAC	2 cut(s)	154, 315
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	3 cut(s)	485, 524, 554
Hpy8I	GTNNAC	2 cut(s)	154, 315
HpyAV	CCTTC	2 cut(s)	167, 430
HpyCH4IV	ACGT	4 cut(s)	59, 95, 136, 236
HpyCH4V	TGCA	5 cut(s)	17, 92, 149, 179, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 206
HpyF3I	CTNAG	5 cut(s)	168, 241, 331, 408, 483
HpySE526I	ACGT	4 cut(s)	59, 95, 136, 236
Hsp92I	GRCGYC	1 cut(s)	497
Hsp92II	CATG	1 cut(s)	347
HspAI	GCGC	1 cut(s)	497
KasI	GGCGCC	1 cut(s)	496
Kzo9I	GATC	1 cut(s)	526
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	9 cut(s)	177, 281, 320, 383, 429, 461, 468, 470, 539
Lsp1109I	GCAGC	2 cut(s)	163, 466
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	540
MaeII	ACGT	4 cut(s)	59, 95, 136, 236
MaeIII	GTNAC	2 cut(s)	19, 256
MalI	GATC	1 cut(s)	528
MboI	GATC	1 cut(s)	526
MboII	GAAGA	4 cut(s)	177, 205, 457, 500
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	4 cut(s)	180, 286, 335, 382
Mly113I	GGCGCC	1 cut(s)	497
MmeI	TCCRAC	2 cut(s)	226, 255
MseI	TTAA	3 cut(s)	290, 303, 372
MspI	CCGG	2 cut(s)	164, 307
MwoI	GCNNNNNNNGC	2 cut(s)	173, 206
NarI	GGCGCC	1 cut(s)	497
NdeII	GATC	1 cut(s)	526
NlaIII	CATG	1 cut(s)	347
NlaIV	GGNNCC	2 cut(s)	414, 498
NmuCI	GTSAC	1 cut(s)	256
PfeI	GAWTC	3 cut(s)	517, 550, 619
PinAI	ACCGGT	1 cut(s)	306
PkrI	GCNGC	3 cut(s)	16, 178, 481
PluTI	GGCGCC	1 cut(s)	500
Ppu21I	YACGTR	2 cut(s)	137, 237
Psp1406I	AACGTT	2 cut(s)	59, 95
PspN4I	GGNNCC	2 cut(s)	414, 498
PstI	CTGCAG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SaqAI	TTAA	3 cut(s)	290, 303, 372
SatI	GCNGC	3 cut(s)	15, 177, 480
Sau3AI	GATC	1 cut(s)	526
SduI	GDGCHC	1 cut(s)	202
SfaNI	GCATC	1 cut(s)	97
SfcI	CTRYAG	1 cut(s)	15
SfoI	GGCGCC	1 cut(s)	498
Sse9I	AATT	4 cut(s)	180, 286, 335, 382
SspDI	GGCGCC	1 cut(s)	496
SspI	AATATT	1 cut(s)	115
SspMI	CTAG	1 cut(s)	540
StyI	CCWWGG	1 cut(s)	507
TaiI	ACGT	4 cut(s)	62, 98, 139, 239
TaqI	TCGA	1 cut(s)	525
TasI	AATT	4 cut(s)	180, 286, 335, 382
TfiI	GAWTC	3 cut(s)	517, 550, 619
Tru1I	TTAA	3 cut(s)	290, 303, 372
Tru9I	TTAA	3 cut(s)	290, 303, 372
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	3 cut(s)	14, 176, 479
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	2 cut(s)	118, 573
TspGWI	ACGGA	1 cut(s)	586
TspRI	CASTG	1 cut(s)	300
XapI	RAATTY	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.