Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004110.1

Orthogroup ID

OG0000992

Physical Location & Seq

Genomic Coordinates Reverse (-)

20986 .. 26063

Gene Structure 5078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004110.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

atgtggagggacctcaagttgggcacacaagcaattcttgggaatgcacgtattattactcgtttgaaggcggataatcccctttatggttcctccttgattgaatatgcccttgtggagcaatggattgattttgcaacgttagagattgatgccaatattttgcgttggttcataccacgtatcggttttgcagtctaccttcctccggctgaggaagctgcaatttcttccttgaagagagcactaactgctttgaacactcatcttacttccaacacgtacttagttgggcactctgtgacattggctgatatcattatgatatgtaatttaacactgggttttaaccggttgttgacaaaaagttttacctcagaatttcctcatgttgagagatacttttggacattggttaatcagcctaattttcgcaagatactgggtgaggtgaaccaagctgaatctgttccagctattcagtcaaagaagccttcacagcctaaggaacctgcaaagaaagaggccaagaaggaagtgaagaaagagccagtaaagcctaaagtagaagaggctgctcaggaagaggaggcacccagacccaaggcaaagaatcctcttgatcttttgcctcctagcaagatgattctggatgaatggaaaaggctttattcaaacacaaagaccaacttccgtgaggttgctgtcaaaggcttctgggacatgtatgatccagagggttactctctttggttttgcgattacaaatacaatgatgaaaatacagtctcattcgtgactttaaacaaggtgggcggctttctgcagcggatggatttggctcgtagatatgcgtttgggaagatgttggtgattggatctgatcctcctttcaaggggaagggcttgtggctgttccgtgggcaagaggttccccagttcataattgatgaatgttatgatatggaactgtatgattggcataaggttgatatcactgatgaggatcaaaaggagcgcgtgaaccagatgattgaagatcaggagccttttgagggggaggccttgttggatgccaaatgcttcaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

363

Amino Acids

41.89

Weight (kDa)

5.81

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09640 AT1G57720 AT1G57720
fragaria_vesca	FvH4_5g28250 FvH4_5g28250 FvH4_5g32590 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560
malus_domestica	MD08G1244100.v1.1 MD15G1403200.v1.1 MD15G1438400.v1.1
prunus_persica	Prupe.1G549300_v2.0.a1 Prupe.1G549300_v2.0.a1 Prupe.1G581500_v2.0.a1 Prupe.1G581500_v2.0.a1
pyrus_communis	pycom08g21180 pycom15g36060 pycom15g38640
rosa_chinensis	RchiOBHm_Chr7g0220411 RchiOBHm_Chr7g0229581 RchiOBHm_Chr7g0229711 RchiOBHm_Chr7g0230101 RchiOBHm_Chr7g0230191
rosa_laevigata	RLG00000001508 RLG00000001510
rosa_multiflora	Rmu_sc0000693.1_g000058 Rmu_sc0000851.1_g000010 Rmu_sc0001621.1_g000005 Rmu_sc0001918.1_g000014 Rmu_sc0002666.1_g000007 Rmu_sc0002822.1_g000020 Rmu_sc0002822.1_g000031 Rmu_sc0004110.1_g000004 Rmu_ssc0000189.1_g000051
rosa_roxburghii	Rroxscaffold_3G00230290 Rroxscaffold_3G00230310 Rroxscaffold_3G00239390
rosa_rugosa	Rorug07G0193900 Rorug07G0259200 Rorug07G0259700 Rorug07G0259900 Rorug07G0260000
rosa_samantha	Rh7AG334900 Rh7AG408700 Rh7AG409300 Rh7AG409800 Rh7BG325900 Rh7BG387800 Rh7BG388100 Rh7BG388200 Rh7BG388600 Rh7CG352600 Rh7CG427700
rosa_wichuraiana	Rw0G018580 Rw0G022570 Rw7G028550 Rw7G033930 Rw7G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	520
AccB1I	GGYRCC	1 cut(s)	592
AccI	GTMKAC	1 cut(s)	198
AccII	CGCG	1 cut(s)	1020
AciI	CCGC	3 cut(s)	71, 816, 829
AclI	AACGTT	1 cut(s)	140
AclWI	GGATC	4 cut(s)	725, 878, 886, 1014
AcsI	RAATTY	1 cut(s)	380
AdeI	CACNNNGTG	1 cut(s)	301
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	6 cut(s)	19, 86, 185, 208, 896, 1055
AflIII	ACRYGT	2 cut(s)	279, 723
AgeI	ACCGGT	1 cut(s)	351
AgsI	TTSAA	8 cut(s)	67, 104, 238, 259, 675, 895, 1037, 1087
AluBI	AGCT	3 cut(s)	221, 461, 476
AluI	AGCT	3 cut(s)	221, 461, 476
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	793
AlwI	GGATC	4 cut(s)	725, 878, 886, 1014
AoxI	GGCC	2 cut(s)	525, 1062
ApeKI	GCWGC	3 cut(s)	221, 575, 826
ApoI	RAATTY	1 cut(s)	380
AsiGI	ACCGGT	1 cut(s)	351
Asp700I	GAANNNNTTC	1 cut(s)	468
AspLEI	GCGC	1 cut(s)	1020
AspS9I	GGNCC	1 cut(s)	10
AsuHPI	GGTGA	3 cut(s)	458, 463, 883
AvaII	GGWCC	1 cut(s)	10
AxyI	CCTNAGG	1 cut(s)	504
BaeGI	GKGCMC	2 cut(s)	26, 297
BanI	GGYRCC	1 cut(s)	592
Bbv12I	GWGCWC	1 cut(s)	247
BbvCI	CCTCAGC	1 cut(s)	213
BbvI	GCAGC	3 cut(s)	208, 562, 838
BccI	CCATC	1 cut(s)	826
BcoDI	GTCTC	1 cut(s)	793
BfaI	CTAG	1 cut(s)	636
BfmI	CTRYAG	1 cut(s)	824
BfuAI	ACCTGC	1 cut(s)	520
BisI	GCNGC	4 cut(s)	222, 576, 817, 827
BlsI	GCNGC	4 cut(s)	223, 577, 818, 828
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	6 cut(s)	11, 91, 510, 594, 933, 1047
BmrI	ACTGGG	3 cut(s)	350, 452, 931
BmsI	GCATC	2 cut(s)	142, 1063
BmuI	ACTGGG	3 cut(s)	350, 452, 931
BplI	GAGNNNNNCTC	2 cut(s)	728, 760
Bpu10I	CCTNAGC	2 cut(s)	213, 579
BsaAI	YACGTR	3 cut(s)	50, 182, 282
BsaBI	GATNNNNATC	1 cut(s)	1005
BsaJI	CCNNGG	2 cut(s)	603, 919
BsaWI	WCCGGW	1 cut(s)	351
BsaXI	ACNNNNNCTCC	2 cut(s)	1052, 1082
Bsc4I	CCNNNNNNNGG	6 cut(s)	19, 86, 185, 208, 896, 1055
Bse118I	RCCGGY	1 cut(s)	351
Bse1I	ACTGG	4 cut(s)	345, 447, 551, 937
Bse21I	CCTNAGG	1 cut(s)	504
Bse3DI	GCAATG	1 cut(s)	128
Bse8I	GATNNNNATC	1 cut(s)	1005
BseDI	CCNNGG	2 cut(s)	603, 919
BseGI	GGATG	3 cut(s)	658, 837, 1078
BseJI	GATNNNNATC	1 cut(s)	1005
BseLI	CCNNNNNNNGG	6 cut(s)	19, 86, 185, 208, 896, 1055
BseMI	GCAATG	1 cut(s)	128
BseMII	CTCAG	3 cut(s)	204, 390, 593
BseNI	ACTGG	4 cut(s)	345, 447, 551, 937
BseRI	GAGGAG	1 cut(s)	602
BseSI	GKGCMC	2 cut(s)	26, 297
BseXI	GCAGC	3 cut(s)	208, 562, 838
Bsh1236I	CGCG	1 cut(s)	1020
BshFI	GGCC	2 cut(s)	527, 1064
BshNI	GGYRCC	1 cut(s)	592
BshTI	ACCGGT	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	247
BsiSI	CCGG	2 cut(s)	209, 352
BslFI	GGGAC	2 cut(s)	23, 734
BslI	CCNNNNNNNGG	6 cut(s)	19, 86, 185, 208, 896, 1055
BsmAI	GTCTC	1 cut(s)	793
BsmFI	GGGAC	2 cut(s)	23, 734
BsmI	GAATGC	1 cut(s)	49
BsnI	GGCC	2 cut(s)	527, 1064
Bsp1286I	GDGCHC	3 cut(s)	26, 247, 297
Bsp143I	GATC	6 cut(s)	622, 730, 878, 883, 1006, 1039
BspACI	CCGC	3 cut(s)	71, 816, 829
BspANI	GGCC	2 cut(s)	527, 1064
BspCNI	CTCAG	3 cut(s)	205, 389, 592
BspFNI	CGCG	1 cut(s)	1020
BspLI	GGNNCC	6 cut(s)	11, 91, 510, 594, 933, 1047
BspMAI	CTGCAG	1 cut(s)	828
BspMI	ACCTGC	1 cut(s)	520
BspPI	GGATC	4 cut(s)	725, 878, 886, 1014
BspT107I	GGYRCC	1 cut(s)	592
BsrDI	GCAATG	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	351
BsrI	ACTGG	4 cut(s)	345, 447, 551, 937
BssAI	RCCGGY	1 cut(s)	351
BssECI	CCNNGG	2 cut(s)	603, 919
BssMI	GATC	6 cut(s)	622, 730, 878, 883, 1006, 1039
BssT1I	CCWWGG	1 cut(s)	603
Bst4CI	ACNGT	2 cut(s)	787, 972
Bst6I	CTCTTC	3 cut(s)	233, 564, 579
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstBAI	YACGTR	3 cut(s)	50, 182, 282
BstDEI	CTNAG	5 cut(s)	213, 286, 376, 504, 579
BstDSI	CCRYGG	1 cut(s)	919
BstF5I	GGATG	3 cut(s)	658, 837, 1078
BstFNI	CGCG	1 cut(s)	1020
BstHHI	GCGC	1 cut(s)	1020
BstKTI	GATC	6 cut(s)	625, 733, 881, 886, 1009, 1042
BstMAI	GTCTC	1 cut(s)	793
BstMBI	GATC	6 cut(s)	622, 730, 878, 883, 1006, 1039
BstMWI	GCNNNNNNNGC	4 cut(s)	218, 251, 499, 556
BstNSI	RCATGY	1 cut(s)	727
BstSFI	CTRYAG	1 cut(s)	824
BstSLI	GKGCMC	2 cut(s)	26, 297
BstUI	CGCG	1 cut(s)	1020
BstV1I	GCAGC	3 cut(s)	208, 562, 838
BstX2I	RGATCY	1 cut(s)	878
BstYI	RGATCY	1 cut(s)	878
Bsu36I	CCTNAGG	1 cut(s)	504
BsuRI	GGCC	2 cut(s)	527, 1064
BtgI	CCRYGG	1 cut(s)	919
BtsCI	GGATG	3 cut(s)	658, 837, 1078
BtsIMutI	CAGTG	2 cut(s)	338, 996
BveI	ACCTGC	1 cut(s)	520
CfoI	GCGC	1 cut(s)	1020
Cfr10I	RCCGGY	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	283
CspAI	ACCGGT	1 cut(s)	351
CviAII	CATG	2 cut(s)	389, 724
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	5 cut(s)	213, 286, 376, 504, 579
DpnI	GATC	6 cut(s)	624, 732, 880, 885, 1008, 1041
DpnII	GATC	6 cut(s)	622, 730, 878, 883, 1006, 1039
DraI	TTTAAA	1 cut(s)	804
DraIII	CACNNNGTG	1 cut(s)	301
Eam1104I	CTCTTC	3 cut(s)	233, 564, 579
EarI	CTCTTC	3 cut(s)	233, 564, 579
EciI	GGCGGA	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	603
Eco147I	AGGCCT	1 cut(s)	1064
Eco32I	GATATC	2 cut(s)	316, 994
Eco47I	GGWCC	1 cut(s)	10
Eco81I	CCTNAGG	1 cut(s)	504
EcoO109I	RGGNCCY	1 cut(s)	10
EcoRV	GATATC	2 cut(s)	316, 994
EcoT14I	CCWWGG	1 cut(s)	603
ErhI	CCWWGG	1 cut(s)	603
FaeI	CATG	2 cut(s)	392, 727
FalI	AAGNNNNNCTT	4 cut(s)	21, 53, 674, 706
FaqI	GGGAC	2 cut(s)	23, 734
FatI	CATG	2 cut(s)	388, 723
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	4 cut(s)	222, 576, 817, 827
FokI	GGATG	3 cut(s)	665, 844, 1085
Fsp4HI	GCNGC	4 cut(s)	222, 576, 817, 827
FspBI	CTAG	1 cut(s)	636
GlaI	GCGC	1 cut(s)	1019
GluI	GCNGC	4 cut(s)	222, 576, 817, 827
HaeIII	GGCC	2 cut(s)	527, 1064
HapII	CCGG	2 cut(s)	209, 352
HhaI	GCGC	1 cut(s)	1020
Hin1II	CATG	2 cut(s)	392, 727
Hin6I	GCGC	1 cut(s)	1018
HinP1I	GCGC	1 cut(s)	1018
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HinfI	GANTC	3 cut(s)	464, 613, 646
HpaII	CCGG	2 cut(s)	209, 352
HphI	GGTGA	3 cut(s)	458, 463, 883
Hpy166II	GTNNAC	4 cut(s)	199, 360, 454, 1024
Hpy188I	TCNGA	2 cut(s)	379, 883
Hpy188III	TCNNGA	6 cut(s)	581, 620, 650, 734, 796, 1043
Hpy8I	GTNNAC	4 cut(s)	199, 360, 454, 1024
HpyAV	CCTTC	5 cut(s)	61, 212, 504, 526, 895
HpyCH4III	ACNGT	2 cut(s)	787, 972
HpyCH4IV	ACGT	4 cut(s)	49, 140, 181, 281
HpyCH4V	TGCA	6 cut(s)	47, 137, 194, 224, 515, 826
HpyF10VI	GCNNNNNNNGC	4 cut(s)	218, 251, 499, 556
HpyF3I	CTNAG	5 cut(s)	213, 286, 376, 504, 579
HpySE526I	ACGT	4 cut(s)	49, 140, 181, 281
Hsp92II	CATG	2 cut(s)	392, 727
HspAI	GCGC	1 cut(s)	1018
Kzo9I	GATC	6 cut(s)	622, 730, 878, 883, 1006, 1039
LmnI	GCTCC	3 cut(s)	118, 1015, 1045
Lsp1109I	GCAGC	3 cut(s)	208, 562, 838
LweI	GCATC	2 cut(s)	142, 1063
MaeI	CTAG	1 cut(s)	636
MaeII	ACGT	4 cut(s)	49, 140, 181, 281
MaeIII	GTNAC	3 cut(s)	301, 740, 796
MalI	GATC	6 cut(s)	624, 732, 880, 885, 1008, 1041
MboI	GATC	6 cut(s)	622, 730, 878, 883, 1006, 1039
MboII	GAAGA	7 cut(s)	222, 250, 553, 581, 596, 874, 1049
MflI	RGATCY	1 cut(s)	878
MhlI	GDGCHC	3 cut(s)	26, 247, 297
MluCI	AATT	6 cut(s)	33, 225, 331, 380, 427, 945
MmeI	TCCRAC	2 cut(s)	300, 1050
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	4 cut(s)	335, 348, 417, 803
MspA1I	CMGCKG	1 cut(s)	829
MspI	CCGG	2 cut(s)	209, 352
Mva1269I	GAATGC	1 cut(s)	49
MvnI	CGCG	1 cut(s)	1020
MwoI	GCNNNNNNNGC	4 cut(s)	218, 251, 499, 556
NdeII	GATC	6 cut(s)	622, 730, 878, 883, 1006, 1039
NlaIII	CATG	2 cut(s)	392, 727
NlaIV	GGNNCC	6 cut(s)	11, 91, 510, 594, 933, 1047
NmuCI	GTSAC	2 cut(s)	301, 796
NspI	RCATGY	1 cut(s)	727
PceI	AGGCCT	1 cut(s)	1064
PciI	ACATGT	1 cut(s)	723
PctI	GAATGC	1 cut(s)	49
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	3 cut(s)	464, 613, 646
PinAI	ACCGGT	1 cut(s)	351
PkrI	GCNGC	4 cut(s)	223, 577, 818, 828
Ppu21I	YACGTR	3 cut(s)	50, 182, 282
PpuMI	RGGWCCY	1 cut(s)	10
PscI	ACATGT	1 cut(s)	723
Psp1406I	AACGTT	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	10
PspN4I	GGNNCC	6 cut(s)	11, 91, 510, 594, 933, 1047
PspPI	GGNCC	1 cut(s)	10
PspPPI	RGGWCCY	1 cut(s)	10
PstI	CTGCAG	1 cut(s)	828
PsuI	RGATCY	1 cut(s)	878
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SaqAI	TTAA	4 cut(s)	335, 348, 417, 803
SatI	GCNGC	4 cut(s)	222, 576, 817, 827
Sau3AI	GATC	6 cut(s)	622, 730, 878, 883, 1006, 1039
Sau96I	GGNCC	1 cut(s)	10
SduI	GDGCHC	3 cut(s)	26, 247, 297
SfaNI	GCATC	2 cut(s)	142, 1063
SfcI	CTRYAG	1 cut(s)	824
SinI	GGWCC	1 cut(s)	10
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	6 cut(s)	33, 225, 331, 380, 427, 945
SseBI	AGGCCT	1 cut(s)	1064
SsiI	CCGC	3 cut(s)	71, 816, 829
SspI	AATATT	1 cut(s)	160
SspMI	CTAG	1 cut(s)	636
StuI	AGGCCT	1 cut(s)	1064
StyI	CCWWGG	1 cut(s)	603
TaaI	ACNGT	2 cut(s)	787, 972
TaiI	ACGT	4 cut(s)	52, 143, 184, 284
TasI	AATT	6 cut(s)	33, 225, 331, 380, 427, 945
TauI	GCSGC	1 cut(s)	819
TfiI	GAWTC	3 cut(s)	464, 613, 646
Tru1I	TTAA	4 cut(s)	335, 348, 417, 803
Tru9I	TTAA	4 cut(s)	335, 348, 417, 803
TscAI	CASTG	2 cut(s)	345, 1003
TseFI	GTSAC	2 cut(s)	301, 796
TseI	GCWGC	3 cut(s)	221, 575, 826
Tsp45I	GTSAC	2 cut(s)	301, 796
TspDTI	ATGAA	5 cut(s)	163, 669, 792, 931, 966
TspGWI	ACGGA	2 cut(s)	683, 908
TspRI	CASTG	2 cut(s)	345, 1003
VpaK11BI	GGWCC	1 cut(s)	10
XapI	RAATTY	1 cut(s)	380
XceI	RCATGY	1 cut(s)	727
XmiI	GTMKAC	1 cut(s)	198
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.