Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000992

Physical Location & Seq

Genomic Coordinates Reverse (-)

54567527 .. 54571601

Gene Structure 4075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG408700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGCTTTGGTGCTGCACGCTGGGAACACCAATAAGAATGGTTACAAGGCACTTATTGCTGCCGAGTTCAGCGGTGTCAGTGTTGAGCTGGTGAAGGATTTCGAGATGGGTGTGTCGAACAAGACTCCCCAGTTTCTCAAAATGAATCCCATTGGGAAGGTTCCTGTGTTGGAAACGCCGGACGGTCCTGTTTTTGAGAGCAATGCCATTGCGCGATATGTTACTCATTTGAAGGCCGATAATCCCCTTTATGGTTCTTCCTTGATTGAATATGCCCTCGTGGAGCAATGGATTGATTTTGCAACGTTAGAGATTGATGCCAATATTTTGCGTTGGTTCATACCGCGTATCGGTTTTGCAGTCTACCTTCCTCCGGCTGAGGAAGCTGCAATTTCTTCCTTGAAGAGAGCACTAACTGCTTTGAACACTCATCTTGCTTCCAACACGTACTTAGTTGGGCACTATGTGACATTGGCTGATATCATTATGATATGTAATTTAACACTGGGATTTAACCGGTTGTTGACAAAAACTTTTACCTCGGAATTTCCTCATGTTGAGAGATACTTTTGGACATTGGCTAATCAGCCTAATTTTCGCAAGATACTGGGTGAGGTGAAACAAGCTGAATCTGTTCCAGCTGTTCAGTCAGCAAAGAAGCCTTCTCAGCCTAAGGAACCTGCAAAGAAAGAGGCCAAGAAAGAAGTGAAGAAAGAACCGGCAAAGCCTAAAGTAGAAGAGGCTCTGGAGGAAGAGGCACCCAAGCCCAAGGCAAAGAATCCTCTTGATCTTTTGCCTCCTAGCAAGATGATTCTGGATGAATGGAAAAGGCTTTATTCAAACACAAAGACCAACTTCCGTGAGGTTGCTGTCAAAGGCTTTTGGGACATGTATGATCCAGAGGGTTACTCCCTTTGGTTTTGCGATTACAAATACAACGATGAAAATACAGTTTCATTTGTGACTTTGAACAAGGTGGGCGGTTTTCTGCAGCGGATGGATTTGGCTCGTAAATATGCGTTTGGGAAGATGTTGGTGATTGGGTCTGTTCCTCCTTTCAAGGTGAAGGGCTTGTGGCTGTTCCGTGGGCAAGAGGTTCCCCAGTTCATAATTGATGAATGTTATGACATGGAACTGTATGATTGGTGTAAGGTTGATATAACTGATGAGGATCAAAAGGAGCGCGTGAACCAGATGATTGAAGATCACGAGCCTTTTGAGGGGGAGGCTTTGTTGGATGCCAAATGCTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

418

Amino Acids

47.6

Weight (kDa)

5.86

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	10 - 74	1.4e-13	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	16 - 76	6.1e-08	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	16 - 81	4.4e-07	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	128 - 197	1.1e-09	Glutathione S-transferase, C-terminal domain
EF1G	PF00647	257 - 365	1.1e-41	Elongation factor 1 gamma, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09640 AT1G57720 AT1G57720
fragaria_vesca	FvH4_5g28250 FvH4_5g28250 FvH4_5g32590 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560
malus_domestica	MD08G1244100.v1.1 MD15G1403200.v1.1 MD15G1438400.v1.1
prunus_persica	Prupe.1G549300_v2.0.a1 Prupe.1G549300_v2.0.a1 Prupe.1G581500_v2.0.a1 Prupe.1G581500_v2.0.a1
pyrus_communis	pycom08g21180 pycom15g36060 pycom15g38640
rosa_chinensis	RchiOBHm_Chr7g0220411 RchiOBHm_Chr7g0229581 RchiOBHm_Chr7g0229711 RchiOBHm_Chr7g0230101 RchiOBHm_Chr7g0230191
rosa_laevigata	RLG00000001508 RLG00000001510
rosa_multiflora	Rmu_sc0000693.1_g000058 Rmu_sc0000851.1_g000010 Rmu_sc0001621.1_g000005 Rmu_sc0001918.1_g000014 Rmu_sc0002666.1_g000007 Rmu_sc0002822.1_g000020 Rmu_sc0002822.1_g000031 Rmu_sc0004110.1_g000004 Rmu_ssc0000189.1_g000051
rosa_roxburghii	Rroxscaffold_3G00230290 Rroxscaffold_3G00230310 Rroxscaffold_3G00239390
rosa_rugosa	Rorug07G0193900 Rorug07G0259200 Rorug07G0259700 Rorug07G0259900 Rorug07G0260000
rosa_samantha	Rh7AG334900 Rh7AG408700 Rh7AG409300 Rh7AG409800 Rh7BG325900 Rh7BG387800 Rh7BG388100 Rh7BG388200 Rh7BG388600 Rh7CG352600 Rh7CG427700
rosa_wichuraiana	Rw0G018580 Rw0G022570 Rw7G028550 Rw7G033930 Rw7G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	688
AccB1I	GGYRCC	1 cut(s)	757
AccI	GTMKAC	1 cut(s)	363
AccII	CGCG	3 cut(s)	214, 346, 1185
AciI	CCGC	4 cut(s)	72, 344, 981, 994
AclI	AACGTT	1 cut(s)	305
AclWI	GGATC	2 cut(s)	890, 1179
AcsI	RAATTY	1 cut(s)	545
AdeI	CACNNNGTG	1 cut(s)	466
AfaI	GTAC	1 cut(s)	449
AfiI	CCNNNNNNNGG	4 cut(s)	251, 350, 373, 1220
AflIII	ACRYGT	2 cut(s)	444, 888
AgeI	ACCGGT	1 cut(s)	516
AgsI	TTSAA	9 cut(s)	232, 269, 403, 424, 840, 970, 1060, 1202, 1252
AluBI	AGCT	4 cut(s)	88, 386, 626, 641
AluI	AGCT	4 cut(s)	88, 386, 626, 641
Alw21I	GWGCWC	1 cut(s)	412
AlwI	GGATC	2 cut(s)	890, 1179
AoxI	GGCC	2 cut(s)	234, 693
ApeKI	GCWGC	4 cut(s)	13, 59, 386, 991
ApoI	RAATTY	1 cut(s)	545
AsiGI	ACCGGT	1 cut(s)	516
Asp700I	GAANNNNTTC	2 cut(s)	98, 633
AspLEI	GCGC	2 cut(s)	214, 1185
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	5 cut(s)	103, 623, 628, 1048, 1075
AvaII	GGWCC	1 cut(s)	185
AxyI	CCTNAGG	1 cut(s)	672
BaeGI	GKGCMC	1 cut(s)	462
BanI	GGYRCC	1 cut(s)	757
BauI	CACGAG	2 cut(s)	278, 1208
Bbv12I	GWGCWC	1 cut(s)	412
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	3 cut(s)	46, 373, 1003
BccI	CCATC	2 cut(s)	100, 991
BfaI	CTAG	1 cut(s)	801
BfmI	CTRYAG	1 cut(s)	989
BfuAI	ACCTGC	1 cut(s)	688
BisI	GCNGC	4 cut(s)	14, 60, 387, 992
BlsI	GCNGC	4 cut(s)	15, 61, 388, 993
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	4 cut(s)	162, 678, 759, 1098
BmrI	ACTGGG	4 cut(s)	124, 515, 617, 1096
BmsI	GCATC	2 cut(s)	307, 1228
BmuI	ACTGGG	4 cut(s)	124, 515, 617, 1096
BplI	GAGNNNNNCTC	2 cut(s)	893, 925
BpmI	CTGGAG	1 cut(s)	767
Bpu10I	CCTNAGC	1 cut(s)	378
BsaAI	YACGTR	1 cut(s)	447
BsaBI	GATNNNNATC	1 cut(s)	1170
BsaJI	CCNNGG	3 cut(s)	540, 768, 1084
BsaWI	WCCGGW	1 cut(s)	516
BsaXI	ACNNNNNCTCC	2 cut(s)	1217, 1247
Bsc4I	CCNNNNNNNGG	4 cut(s)	251, 350, 373, 1220
Bse118I	RCCGGY	2 cut(s)	516, 718
Bse1I	ACTGG	4 cut(s)	130, 510, 612, 1102
Bse21I	CCTNAGG	1 cut(s)	672
Bse3DI	GCAATG	3 cut(s)	207, 208, 293
Bse8I	GATNNNNATC	1 cut(s)	1170
BseDI	CCNNGG	3 cut(s)	540, 768, 1084
BseGI	GGATG	3 cut(s)	823, 1002, 1243
BseJI	GATNNNNATC	1 cut(s)	1170
BseLI	CCNNNNNNNGG	4 cut(s)	251, 350, 373, 1220
BseMI	GCAATG	3 cut(s)	207, 208, 293
BseMII	CTCAG	2 cut(s)	369, 680
BseNI	ACTGG	4 cut(s)	130, 510, 612, 1102
BseSI	GKGCMC	1 cut(s)	462
BseXI	GCAGC	3 cut(s)	46, 373, 1003
BseYI	CCCAGC	1 cut(s)	20
Bsh1236I	CGCG	3 cut(s)	214, 346, 1185
BshFI	GGCC	2 cut(s)	236, 695
BshNI	GGYRCC	1 cut(s)	757
BshTI	ACCGGT	1 cut(s)	516
BsiHKAI	GWGCWC	1 cut(s)	412
BsiSI	CCGG	4 cut(s)	179, 374, 517, 719
BslFI	GGGAC	1 cut(s)	899
BslI	CCNNNNNNNGG	4 cut(s)	251, 350, 373, 1220
BsmFI	GGGAC	1 cut(s)	899
BsnI	GGCC	2 cut(s)	236, 695
Bsp1286I	GDGCHC	2 cut(s)	412, 462
Bsp143I	GATC	4 cut(s)	787, 895, 1171, 1204
BspACI	CCGC	4 cut(s)	72, 344, 981, 994
BspANI	GGCC	2 cut(s)	236, 695
BspCNI	CTCAG	2 cut(s)	370, 679
BspFNI	CGCG	3 cut(s)	214, 346, 1185
BspLI	GGNNCC	4 cut(s)	162, 678, 759, 1098
BspMAI	CTGCAG	1 cut(s)	993
BspMI	ACCTGC	1 cut(s)	688
BspPI	GGATC	2 cut(s)	890, 1179
BspT107I	GGYRCC	1 cut(s)	757
BsrDI	GCAATG	3 cut(s)	207, 208, 293
BsrFI	RCCGGY	2 cut(s)	516, 718
BsrI	ACTGG	4 cut(s)	130, 510, 612, 1102
BssAI	RCCGGY	2 cut(s)	516, 718
BssECI	CCNNGG	3 cut(s)	540, 768, 1084
BssMI	GATC	4 cut(s)	787, 895, 1171, 1204
BssSI	CACGAG	2 cut(s)	278, 1208
BssT1I	CCWWGG	1 cut(s)	768
Bst2BI	CACGAG	2 cut(s)	278, 1208
Bst4CI	ACNGT	3 cut(s)	185, 952, 1137
Bst6I	CTCTTC	3 cut(s)	398, 732, 747
BstAPI	GCANNNNNTGC	2 cut(s)	56, 416
BstBAI	YACGTR	1 cut(s)	447
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	4 cut(s)	378, 451, 666, 672
BstDSI	CCRYGG	1 cut(s)	1084
BstF5I	GGATG	3 cut(s)	823, 1002, 1243
BstFNI	CGCG	3 cut(s)	214, 346, 1185
BstHHI	GCGC	2 cut(s)	214, 1185
BstKTI	GATC	4 cut(s)	790, 898, 1174, 1207
BstMBI	GATC	4 cut(s)	787, 895, 1171, 1204
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 383, 416, 667
BstNSI	RCATGY	1 cut(s)	892
BstSFI	CTRYAG	1 cut(s)	989
BstSLI	GKGCMC	1 cut(s)	462
BstUI	CGCG	3 cut(s)	214, 346, 1185
BstV1I	GCAGC	3 cut(s)	46, 373, 1003
Bsu36I	CCTNAGG	1 cut(s)	672
BsuRI	GGCC	2 cut(s)	236, 695
BtgI	CCRYGG	1 cut(s)	1084
BtsCI	GGATG	3 cut(s)	823, 1002, 1243
BtsIMutI	CAGTG	2 cut(s)	85, 503
BveI	ACCTGC	1 cut(s)	688
Cac8I	GCNNGC	1 cut(s)	18
CfoI	GCGC	2 cut(s)	214, 1185
Cfr10I	RCCGGY	2 cut(s)	516, 718
Cfr13I	GGNCC	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	448
CspAI	ACCGGT	1 cut(s)	516
CviAII	CATG	3 cut(s)	554, 889, 1129
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	4 cut(s)	378, 451, 666, 672
DpnI	GATC	4 cut(s)	789, 897, 1173, 1206
DpnII	GATC	4 cut(s)	787, 895, 1171, 1204
DraIII	CACNNNGTG	1 cut(s)	466
Eam1104I	CTCTTC	3 cut(s)	398, 732, 747
EarI	CTCTTC	3 cut(s)	398, 732, 747
Eco130I	CCWWGG	1 cut(s)	768
Eco32I	GATATC	1 cut(s)	481
Eco47I	GGWCC	1 cut(s)	185
Eco81I	CCTNAGG	1 cut(s)	672
EcoRV	GATATC	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	768
ErhI	CCWWGG	1 cut(s)	768
FaeI	CATG	3 cut(s)	557, 892, 1132
FalI	AAGNNNNNCTT	2 cut(s)	839, 871
FaqI	GGGAC	1 cut(s)	899
FatI	CATG	3 cut(s)	553, 888, 1128
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	4 cut(s)	14, 60, 387, 992
FokI	GGATG	3 cut(s)	830, 1009, 1250
Fsp4HI	GCNGC	4 cut(s)	14, 60, 387, 992
FspBI	CTAG	1 cut(s)	801
GlaI	GCGC	2 cut(s)	213, 1184
GluI	GCNGC	4 cut(s)	14, 60, 387, 992
GsaI	CCCAGC	1 cut(s)	24
GsuI	CTGGAG	1 cut(s)	767
HaeIII	GGCC	2 cut(s)	236, 695
HapII	CCGG	4 cut(s)	179, 374, 517, 719
HhaI	GCGC	2 cut(s)	214, 1185
Hin1II	CATG	3 cut(s)	557, 892, 1132
Hin6I	GCGC	2 cut(s)	212, 1183
HinP1I	GCGC	2 cut(s)	212, 1183
HincII	GTYRAC	1 cut(s)	525
HindII	GTYRAC	1 cut(s)	525
HinfI	GANTC	5 cut(s)	124, 145, 629, 778, 811
HpaII	CCGG	4 cut(s)	179, 374, 517, 719
HphI	GGTGA	5 cut(s)	103, 623, 628, 1048, 1075
Hpy166II	GTNNAC	3 cut(s)	364, 525, 1189
Hpy188I	TCNGA	1 cut(s)	544
Hpy188III	TCNNGA	6 cut(s)	103, 746, 785, 815, 899, 1208
Hpy8I	GTNNAC	3 cut(s)	364, 525, 1189
HpyAV	CCTTC	6 cut(s)	88, 151, 226, 377, 672, 1060
HpyCH4III	ACNGT	3 cut(s)	185, 952, 1137
HpyCH4IV	ACGT	2 cut(s)	305, 446
HpyCH4V	TGCA	6 cut(s)	16, 302, 359, 389, 683, 991
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 383, 416, 667
HpyF3I	CTNAG	4 cut(s)	378, 451, 666, 672
HpySE526I	ACGT	2 cut(s)	305, 446
Hsp92II	CATG	3 cut(s)	557, 892, 1132
HspAI	GCGC	2 cut(s)	212, 1183
Kzo9I	GATC	4 cut(s)	787, 895, 1171, 1204
LmnI	GCTCC	2 cut(s)	283, 1180
Lsp1109I	GCAGC	3 cut(s)	46, 373, 1003
LweI	GCATC	2 cut(s)	307, 1228
MaeI	CTAG	1 cut(s)	801
MaeII	ACGT	2 cut(s)	305, 446
MaeIII	GTNAC	5 cut(s)	41, 220, 466, 905, 961
MalI	GATC	4 cut(s)	789, 897, 1173, 1206
MboI	GATC	4 cut(s)	787, 895, 1171, 1204
MboII	GAAGA	8 cut(s)	249, 387, 415, 721, 749, 764, 1039, 1214
MhlI	GDGCHC	2 cut(s)	412, 462
MluCI	AATT	5 cut(s)	390, 496, 545, 592, 1110
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	3 cut(s)	150, 465, 1215
MroXI	GAANNNNTTC	2 cut(s)	98, 633
MseI	TTAA	2 cut(s)	500, 513
MspA1I	CMGCKG	3 cut(s)	72, 641, 994
MspI	CCGG	4 cut(s)	179, 374, 517, 719
MvnI	CGCG	3 cut(s)	214, 346, 1185
MwoI	GCNNNNNNNGC	4 cut(s)	56, 383, 416, 667
NdeII	GATC	4 cut(s)	787, 895, 1171, 1204
NlaIII	CATG	3 cut(s)	557, 892, 1132
NlaIV	GGNNCC	4 cut(s)	162, 678, 759, 1098
NmeAIII	GCCGAG	1 cut(s)	88
NmuCI	GTSAC	2 cut(s)	466, 961
NspI	RCATGY	1 cut(s)	892
PciI	ACATGT	1 cut(s)	888
PdmI	GAANNNNTTC	2 cut(s)	98, 633
PfeI	GAWTC	4 cut(s)	145, 629, 778, 811
PinAI	ACCGGT	1 cut(s)	516
PkrI	GCNGC	4 cut(s)	15, 61, 388, 993
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Ppu21I	YACGTR	1 cut(s)	447
PscI	ACATGT	1 cut(s)	888
Psp1406I	AACGTT	1 cut(s)	305
PspFI	CCCAGC	1 cut(s)	20
PspN4I	GGNNCC	4 cut(s)	162, 678, 759, 1098
PspPI	GGNCC	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	993
PvuII	CAGCTG	1 cut(s)	641
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
SaqAI	TTAA	2 cut(s)	500, 513
SatI	GCNGC	4 cut(s)	14, 60, 387, 992
Sau3AI	GATC	4 cut(s)	787, 895, 1171, 1204
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	1 cut(s)	118
SduI	GDGCHC	2 cut(s)	412, 462
SfaNI	GCATC	2 cut(s)	307, 1228
SfcI	CTRYAG	1 cut(s)	989
SinI	GGWCC	1 cut(s)	185
Sse9I	AATT	5 cut(s)	390, 496, 545, 592, 1110
SsiI	CCGC	4 cut(s)	72, 344, 981, 994
SspI	AATATT	1 cut(s)	325
SspMI	CTAG	1 cut(s)	801
StyI	CCWWGG	1 cut(s)	768
TaaI	ACNGT	3 cut(s)	185, 952, 1137
TaiI	ACGT	2 cut(s)	308, 449
TaqI	TCGA	2 cut(s)	102, 116
TasI	AATT	5 cut(s)	390, 496, 545, 592, 1110
TfiI	GAWTC	4 cut(s)	145, 629, 778, 811
Tru1I	TTAA	2 cut(s)	500, 513
Tru9I	TTAA	2 cut(s)	500, 513
TscAI	CASTG	2 cut(s)	85, 510
TseFI	GTSAC	2 cut(s)	466, 961
TseI	GCWGC	4 cut(s)	13, 59, 386, 991
Tsp45I	GTSAC	2 cut(s)	466, 961
TspDTI	ATGAA	7 cut(s)	158, 328, 834, 945, 957, 1096, 1131
TspGWI	ACGGA	2 cut(s)	848, 1073
TspRI	CASTG	2 cut(s)	85, 510
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	1 cut(s)	545
XceI	RCATGY	1 cut(s)	892
XmiI	GTMKAC	1 cut(s)	363
XmnI	GAANNNNTTC	2 cut(s)	98, 633
XspI	CTAG	1 cut(s)	801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.