Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000992

Physical Location & Seq

Genomic Coordinates Reverse (-)

16502601 .. 16505478

Gene Structure 2878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0193900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGCCTCATCAAAGGAGCATTTCAATATCCAATTTTCTCTCAAGTCCTACCTCAAATTCTAGTTTCTGTACTTCTTGTATCCTTGGCATCTATATCCAAATCACTCTGAAAATTGTAATGGCACTCACTTTTATTTCCTCACTTTCCATTCAGTCCTTAACCTCATCTTCTTCGAATTCAAAGACTTATCCAACCCGTCAGCAATCCCTCTCCAGACCCTTTTCCATGGTATGCCAGATAGACCCTAACAGACACAATTTTCAAGATGGTTCCCACAAGCAATGCATGACCGTTAGAGAAGGGTCCAAGAATTGGAAAAACATAGTTTCAGTAGCCTTGGCAACTGCTGCAGTTATTAGCTTCAGCTCTGGCATGCCCGCCATTGCAGACCTCAATAAGTTTGAAGCCGAAACACCTGGTGAATTTGGTATAGGATCAGCAGCCCAATTTGGTTCTGCAGACCTCAGGAAAGCAGTACATGTGAATGAAAATTTCAGGAGAGCCAATTTCACATCTGCTGATATGAGGGAATCTGATTTCAGTGGTTCAACATTCAATGGTGCATACCTTGAGAAAGCTGTAGCATATAAGGCTAATTTTGCTGGTGCGGATTTGAGCGACACATTGATGGATCGTATGGTCCTTAATGAAGCTAATCTCAAGGATGCTGTGCTTGTTAGATCAGTTCTCACTCGAAGTGATCTTGGTGGTGCCCTAATCGAAGGCGCTGATTTCAGTGACGCTGTCTTGGACCTCACCCAGAAGCAGGCTCTCTGCAAGTATGCAAGTGGCACGAACCCAACTACAGGGGTGAGCACAAGATCAAGCCTAGGTTGCGGGAACAGTCGACGAAATGCTTATGGCTCTCCCTCATCCCCTCTGTTAAGTGCTCCACCTCAGAAACTACTTAATCGGGATGGATTCTGTGATCAAGAAACTGGTCTTTGTGATGTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

319

Amino Acids

34.24

Weight (kDa)

8.39

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pentapeptide	PF00805	148 - 187	1.3e-08	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	173 - 210	7.6e-08	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09640 AT1G57720 AT1G57720
fragaria_vesca	FvH4_5g28250 FvH4_5g28250 FvH4_5g32590 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560
malus_domestica	MD08G1244100.v1.1 MD15G1403200.v1.1 MD15G1438400.v1.1
prunus_persica	Prupe.1G549300_v2.0.a1 Prupe.1G549300_v2.0.a1 Prupe.1G581500_v2.0.a1 Prupe.1G581500_v2.0.a1
pyrus_communis	pycom08g21180 pycom15g36060 pycom15g38640
rosa_chinensis	RchiOBHm_Chr7g0220411 RchiOBHm_Chr7g0229581 RchiOBHm_Chr7g0229711 RchiOBHm_Chr7g0230101 RchiOBHm_Chr7g0230191
rosa_laevigata	RLG00000001508 RLG00000001510
rosa_multiflora	Rmu_sc0000693.1_g000058 Rmu_sc0000851.1_g000010 Rmu_sc0001621.1_g000005 Rmu_sc0001918.1_g000014 Rmu_sc0002666.1_g000007 Rmu_sc0002822.1_g000020 Rmu_sc0002822.1_g000031 Rmu_sc0004110.1_g000004 Rmu_ssc0000189.1_g000051
rosa_roxburghii	Rroxscaffold_3G00230290 Rroxscaffold_3G00230310 Rroxscaffold_3G00239390
rosa_rugosa	Rorug07G0193900 Rorug07G0259200 Rorug07G0259700 Rorug07G0259900 Rorug07G0260000
rosa_samantha	Rh7AG334900 Rh7AG408700 Rh7AG409300 Rh7AG409800 Rh7BG325900 Rh7BG387800 Rh7BG388100 Rh7BG388200 Rh7BG388600 Rh7CG352600 Rh7CG427700
rosa_wichuraiana	Rw0G018580 Rw0G022570 Rw7G028550 Rw7G033930 Rw7G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	710
AccB7I	CCANNNNNTGG	1 cut(s)	312
AccI	GTMKAC	1 cut(s)	847
AciI	CCGC	3 cut(s)	378, 608, 837
AclWI	GGATC	2 cut(s)	442, 639
AcsI	RAATTY	4 cut(s)	55, 175, 422, 490
AcuI	CTGAAG	1 cut(s)	346
AdeI	CACNNNGTG	1 cut(s)	419
AfaI	GTAC	2 cut(s)	70, 477
AfiI	CCNNNNNNNGG	3 cut(s)	312, 766, 806
AflIII	ACRYGT	1 cut(s)	478
AgsI	TTSAA	6 cut(s)	24, 180, 263, 404, 549, 556
AjnI	CCWGG	1 cut(s)	415
AluBI	AGCT	4 cut(s)	360, 366, 578, 653
AluI	AGCT	4 cut(s)	360, 366, 578, 653
Alw21I	GWGCWC	2 cut(s)	818, 892
AlwI	GGATC	2 cut(s)	442, 639
ApeKI	GCWGC	2 cut(s)	347, 440
ApoI	RAATTY	4 cut(s)	55, 175, 422, 490
AspA2I	CCTAGG	1 cut(s)	829
AspLEI	GCGC	1 cut(s)	728
AspS9I	GGNCC	3 cut(s)	303, 640, 751
AsuHPI	GGTGA	3 cut(s)	431, 748, 823
AsuII	TTCGAA	1 cut(s)	173
AvaII	GGWCC	3 cut(s)	303, 640, 751
AvrII	CCTAGG	1 cut(s)	829
AxyI	CCTNAGG	1 cut(s)	464
BaeGI	GKGCMC	1 cut(s)	715
BanI	GGYRCC	1 cut(s)	710
Bbv12I	GWGCWC	2 cut(s)	818, 892
BbvI	GCAGC	2 cut(s)	334, 452
BccI	CCATC	3 cut(s)	260, 622, 911
BciT130I	CCWGG	1 cut(s)	417
BciVI	GTATCC	1 cut(s)	89
BclI	TGATCA	1 cut(s)	928
BfaI	CTAG	2 cut(s)	60, 830
BfmI	CTRYAG	4 cut(s)	348, 456, 579, 804
BfoI	RGCGCY	1 cut(s)	729
BfuI	GTATCC	1 cut(s)	89
BisI	GCNGC	2 cut(s)	348, 441
BlnI	CCTAGG	1 cut(s)	829
BlsI	GCNGC	2 cut(s)	349, 442
Bme1390I	CCNGG	1 cut(s)	417
Bme18I	GGWCC	3 cut(s)	303, 640, 751
BmgT120I	GGNCC	3 cut(s)	303, 640, 751
BmiI	GGNNCC	3 cut(s)	271, 304, 712
BmrFI	CCNGG	1 cut(s)	417
BmsI	GCATC	2 cut(s)	96, 655
BpmI	CTGGAG	1 cut(s)	196
Bpu14I	TTCGAA	1 cut(s)	173
BpuEI	CTTGAG	3 cut(s)	25, 590, 644
BsaJI	CCNNGG	4 cut(s)	82, 225, 336, 829
Bsc4I	CCNNNNNNNGG	3 cut(s)	312, 766, 806
Bse1I	ACTGG	1 cut(s)	943
Bse21I	CCTNAGG	1 cut(s)	464
Bse3DI	GCAATG	2 cut(s)	287, 381
BseBI	CCWGG	1 cut(s)	417
BseDI	CCNNGG	4 cut(s)	82, 225, 336, 829
BseGI	GGATG	3 cut(s)	670, 872, 922
BseLI	CCNNNNNNNGG	3 cut(s)	312, 766, 806
BseMI	GCAATG	2 cut(s)	287, 381
BseMII	CTCAG	2 cut(s)	478, 911
BseNI	ACTGG	1 cut(s)	943
BseSI	GKGCMC	1 cut(s)	715
BseXI	GCAGC	2 cut(s)	334, 452
BshNI	GGYRCC	1 cut(s)	710
BsiHKAI	GWGCWC	2 cut(s)	818, 892
BslI	CCNNNNNNNGG	3 cut(s)	312, 766, 806
Bsp119I	TTCGAA	1 cut(s)	173
Bsp1286I	GDGCHC	3 cut(s)	715, 818, 892
Bsp143I	GATC	6 cut(s)	434, 631, 680, 700, 821, 928
Bsp19I	CCATGG	1 cut(s)	225
BspACI	CCGC	3 cut(s)	378, 608, 837
BspCNI	CTCAG	2 cut(s)	477, 910
BspLI	GGNNCC	3 cut(s)	271, 304, 712
BspMAI	CTGCAG	2 cut(s)	352, 460
BspPI	GGATC	2 cut(s)	442, 639
BspT104I	TTCGAA	1 cut(s)	173
BspT107I	GGYRCC	1 cut(s)	710
BsrDI	GCAATG	2 cut(s)	287, 381
BsrI	ACTGG	1 cut(s)	943
BssECI	CCNNGG	4 cut(s)	82, 225, 336, 829
BssMI	GATC	6 cut(s)	434, 631, 680, 700, 821, 928
BssT1I	CCWWGG	4 cut(s)	82, 225, 336, 829
Bst2UI	CCWGG	1 cut(s)	417
Bst4CI	ACNGT	2 cut(s)	292, 845
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstBI	TTCGAA	1 cut(s)	173
BstC8I	GCNNGC	3 cut(s)	374, 378, 768
BstDEI	CTNAG	2 cut(s)	464, 897
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	3 cut(s)	670, 872, 922
BstH2I	RGCGCY	1 cut(s)	729
BstHHI	GCGC	1 cut(s)	728
BstKTI	GATC	6 cut(s)	437, 634, 683, 703, 824, 931
BstMBI	GATC	6 cut(s)	434, 631, 680, 700, 821, 928
BstMWI	GCNNNNNNNGC	4 cut(s)	347, 590, 599, 834
BstNI	CCWGG	1 cut(s)	417
BstNSI	RCATGY	2 cut(s)	376, 482
BstSCI	CCNGG	1 cut(s)	415
BstSFI	CTRYAG	4 cut(s)	348, 456, 579, 804
BstSLI	GKGCMC	1 cut(s)	715
BstV1I	GCAGC	2 cut(s)	334, 452
Bsu36I	CCTNAGG	1 cut(s)	464
BsuI	GTATCC	1 cut(s)	89
BtgI	CCRYGG	1 cut(s)	225
BtsCI	GGATG	3 cut(s)	670, 872, 922
BtsIMutI	CAGTG	2 cut(s)	547, 742
Cac8I	GCNNGC	3 cut(s)	374, 378, 768
CfoI	GCGC	1 cut(s)	728
Cfr13I	GGNCC	3 cut(s)	303, 640, 751
CseI	GACGC	1 cut(s)	749
CsiI	ACCWGGT	1 cut(s)	415
Csp6I	GTAC	2 cut(s)	69, 476
CviAII	CATG	4 cut(s)	226, 286, 373, 479
CviQI	GTAC	2 cut(s)	69, 476
DdeI	CTNAG	2 cut(s)	464, 897
DpnI	GATC	6 cut(s)	436, 633, 682, 702, 823, 930
DpnII	GATC	6 cut(s)	434, 631, 680, 700, 821, 928
DraIII	CACNNNGTG	1 cut(s)	419
Eco130I	CCWWGG	4 cut(s)	82, 225, 336, 829
Eco47I	GGWCC	3 cut(s)	303, 640, 751
Eco57I	CTGAAG	1 cut(s)	346
Eco81I	CCTNAGG	1 cut(s)	464
EcoRI	GAATTC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	415
EcoT14I	CCWWGG	4 cut(s)	82, 225, 336, 829
EcoT22I	ATGCAT	1 cut(s)	287
ErhI	CCWWGG	4 cut(s)	82, 225, 336, 829
FaeI	CATG	4 cut(s)	229, 289, 376, 482
FatI	CATG	4 cut(s)	225, 285, 372, 478
FauI	CCCGC	2 cut(s)	385, 830
FbaI	TGATCA	1 cut(s)	928
FblI	GTMKAC	1 cut(s)	847
Fnu4HI	GCNGC	2 cut(s)	348, 441
FokI	GGATG	3 cut(s)	677, 859, 929
Fsp4HI	GCNGC	2 cut(s)	348, 441
FspBI	CTAG	2 cut(s)	60, 830
GlaI	GCGC	1 cut(s)	727
GluI	GCNGC	2 cut(s)	348, 441
GsuI	CTGGAG	1 cut(s)	196
HaeII	RGCGCY	1 cut(s)	729
HgaI	GACGC	1 cut(s)	749
HhaI	GCGC	1 cut(s)	728
Hin1II	CATG	4 cut(s)	229, 289, 376, 482
Hin6I	GCGC	1 cut(s)	726
HinP1I	GCGC	1 cut(s)	726
HincII	GTYRAC	1 cut(s)	848
HindII	GTYRAC	1 cut(s)	848
HinfI	GANTC	2 cut(s)	530, 921
HphI	GGTGA	3 cut(s)	431, 748, 823
Hpy166II	GTNNAC	1 cut(s)	848
Hpy188I	TCNGA	3 cut(s)	108, 535, 900
Hpy188III	TCNNGA	6 cut(s)	213, 263, 466, 496, 914, 932
Hpy8I	GTNNAC	1 cut(s)	848
Hpy99I	CGWCG	1 cut(s)	852
HpyAV	CCTTC	2 cut(s)	293, 716
HpyCH4III	ACNGT	2 cut(s)	292, 845
HpyCH4V	TGCA	7 cut(s)	285, 350, 386, 458, 563, 777, 785
HpyF10VI	GCNNNNNNNGC	4 cut(s)	347, 590, 599, 834
HpyF3I	CTNAG	2 cut(s)	464, 897
Hsp92II	CATG	4 cut(s)	229, 289, 376, 482
HspAI	GCGC	1 cut(s)	726
Ksp22I	TGATCA	1 cut(s)	928
Kzo9I	GATC	6 cut(s)	434, 631, 680, 700, 821, 928
LmnI	GCTCC	2 cut(s)	15, 895
Lsp1109I	GCAGC	2 cut(s)	334, 452
LweI	GCATC	2 cut(s)	96, 655
MabI	ACCWGGT	1 cut(s)	415
MaeI	CTAG	2 cut(s)	60, 830
MaeIII	GTNAC	1 cut(s)	737
MalI	GATC	6 cut(s)	436, 633, 682, 702, 823, 930
MboI	GATC	6 cut(s)	434, 631, 680, 700, 821, 928
MboII	GAAGA	2 cut(s)	159, 162
MhlI	GDGCHC	3 cut(s)	715, 818, 892
MmeI	TCCRAC	1 cut(s)	215
Mph1103I	ATGCAT	1 cut(s)	287
MseI	TTAA	4 cut(s)	158, 645, 884, 909
MslI	CAYNNNNRTG	2 cut(s)	483, 626
MspR9I	CCNGG	1 cut(s)	417
MvaI	CCWGG	1 cut(s)	417
MwoI	GCNNNNNNNGC	4 cut(s)	347, 590, 599, 834
NcoI	CCATGG	1 cut(s)	225
NdeII	GATC	6 cut(s)	434, 631, 680, 700, 821, 928
NlaIII	CATG	4 cut(s)	229, 289, 376, 482
NlaIV	GGNNCC	3 cut(s)	271, 304, 712
NmuCI	GTSAC	1 cut(s)	737
NsiI	ATGCAT	1 cut(s)	287
NspI	RCATGY	2 cut(s)	376, 482
NspV	TTCGAA	1 cut(s)	173
PaeI	GCATGC	1 cut(s)	376
PciI	ACATGT	1 cut(s)	478
PfeI	GAWTC	2 cut(s)	530, 921
PflFI	GACNNNGTC	1 cut(s)	743
PflMI	CCANNNNNTGG	1 cut(s)	312
PkrI	GCNGC	2 cut(s)	349, 442
PscI	ACATGT	1 cut(s)	478
Psp6I	CCWGG	1 cut(s)	415
PspGI	CCWGG	1 cut(s)	415
PspN4I	GGNNCC	3 cut(s)	271, 304, 712
PspPI	GGNCC	3 cut(s)	303, 640, 751
PstI	CTGCAG	2 cut(s)	352, 460
PsyI	GACNNNGTC	1 cut(s)	743
RsaI	GTAC	2 cut(s)	70, 477
RsaNI	GTAC	2 cut(s)	69, 476
RseI	CAYNNNNRTG	2 cut(s)	483, 626
SalI	GTCGAC	1 cut(s)	846
SaqAI	TTAA	4 cut(s)	158, 645, 884, 909
SatI	GCNGC	2 cut(s)	348, 441
Sau3AI	GATC	6 cut(s)	434, 631, 680, 700, 821, 928
Sau96I	GGNCC	3 cut(s)	303, 640, 751
ScrFI	CCNGG	1 cut(s)	417
SduI	GDGCHC	3 cut(s)	715, 818, 892
SexAI	ACCWGGT	1 cut(s)	415
SfaNI	GCATC	2 cut(s)	96, 655
SfcI	CTRYAG	4 cut(s)	348, 456, 579, 804
SfuI	TTCGAA	1 cut(s)	173
SinI	GGWCC	3 cut(s)	303, 640, 751
SmiMI	CAYNNNNRTG	2 cut(s)	483, 626
SmlI	CTYRAG	3 cut(s)	40, 569, 659
SmoI	CTYRAG	3 cut(s)	40, 569, 659
SphI	GCATGC	1 cut(s)	376
SsiI	CCGC	3 cut(s)	378, 608, 837
SspMI	CTAG	2 cut(s)	60, 830
StyD4I	CCNGG	1 cut(s)	415
StyI	CCWWGG	4 cut(s)	82, 225, 336, 829
TaaI	ACNGT	2 cut(s)	292, 845
TaqI	TCGA	4 cut(s)	173, 694, 720, 847
TatI	WGTACW	2 cut(s)	68, 475
TfiI	GAWTC	2 cut(s)	530, 921
Tru1I	TTAA	4 cut(s)	158, 645, 884, 909
Tru9I	TTAA	4 cut(s)	158, 645, 884, 909
TscAI	CASTG	2 cut(s)	547, 742
TseFI	GTSAC	1 cut(s)	737
TseI	GCWGC	2 cut(s)	347, 440
Tsp45I	GTSAC	1 cut(s)	737
TspDTI	ATGAA	2 cut(s)	501, 663
TspRI	CASTG	2 cut(s)	547, 742
Tth111I	GACNNNGTC	1 cut(s)	743
Van91I	CCANNNNNTGG	1 cut(s)	312
VpaK11BI	GGWCC	3 cut(s)	303, 640, 751
XapI	RAATTY	4 cut(s)	55, 175, 422, 490
XceI	RCATGY	2 cut(s)	376, 482
XmaJI	CCTAGG	1 cut(s)	829
XmiI	GTMKAC	1 cut(s)	847
XspI	CTAG	2 cut(s)	60, 830
Zsp2I	ATGCAT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.