Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000992

Physical Location & Seq

Genomic Coordinates Reverse (-)

53141992 .. 53144394

Gene Structure 2403 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20566

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCCAATATTTTGCGTTGGTTCATACCGCTTTTCGGTTTTGCAGTCTACCTTCGCTGAGGAAGCTGCAATTTCTTCCTTGAAGAGAGCACTAACTGCTTTGAACACTCATCTAGCTTCCAACACGTACTTAGTTGGGCACTCTGTGACATTGGCTGATATCATTATGATATGTAATTTAACACTGGGATTTAAACGGTTGTTGACAAAAAATTTTACCTCGGAATTTCCTCATGTTGAGAGATACTTTTGGAAATTGGTTAATCAGCCTAATTTTCGCAAGATACTGGGTGAGGTGAAACAAGCTGAATCTGTTCCAGCTGTTCAGTCAGCAAAGAAGCCTTCACAGCCTAGCCTAAGGAACCTGCAAAGAAAGAGGCCAAGAAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

130

Amino Acids

14.77

Weight (kDa)

10.38

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_C_2	PF13410	21 - 83	1.4e-06	Glutathione S-transferase, C-terminal domain
GST_C	PF00043	22 - 90	1.2e-10	Glutathione S-transferase, C-terminal domain
GST_C_3	PF14497	22 - 92	1.7e-06	Glutathione S-transferase, C-terminal domain
Arc1p_N_like	PF21972	25 - 86	3.3e-06	Nuclear-export cofactor Arc1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09640 AT1G57720 AT1G57720
fragaria_vesca	FvH4_5g28250 FvH4_5g28250 FvH4_5g32590 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560
malus_domestica	MD08G1244100.v1.1 MD15G1403200.v1.1 MD15G1438400.v1.1
prunus_persica	Prupe.1G549300_v2.0.a1 Prupe.1G549300_v2.0.a1 Prupe.1G581500_v2.0.a1 Prupe.1G581500_v2.0.a1
pyrus_communis	pycom08g21180 pycom15g36060 pycom15g38640
rosa_chinensis	RchiOBHm_Chr7g0220411 RchiOBHm_Chr7g0229581 RchiOBHm_Chr7g0229711 RchiOBHm_Chr7g0230101 RchiOBHm_Chr7g0230191
rosa_laevigata	RLG00000001508 RLG00000001510
rosa_multiflora	Rmu_sc0000693.1_g000058 Rmu_sc0000851.1_g000010 Rmu_sc0001621.1_g000005 Rmu_sc0001918.1_g000014 Rmu_sc0002666.1_g000007 Rmu_sc0002822.1_g000020 Rmu_sc0002822.1_g000031 Rmu_sc0004110.1_g000004 Rmu_ssc0000189.1_g000051
rosa_roxburghii	Rroxscaffold_3G00230290 Rroxscaffold_3G00230310 Rroxscaffold_3G00239390
rosa_rugosa	Rorug07G0193900 Rorug07G0259200 Rorug07G0259700 Rorug07G0259900 Rorug07G0260000
rosa_samantha	Rh7AG334900 Rh7AG408700 Rh7AG409300 Rh7AG409800 Rh7BG325900 Rh7BG387800 Rh7BG388100 Rh7BG388200 Rh7BG388600 Rh7CG352600 Rh7CG427700
rosa_wichuraiana	Rw0G018580 Rw0G022570 Rw7G028550 Rw7G033930 Rw7G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	372
AccI	GTMKAC	1 cut(s)	47
AciI	CCGC	1 cut(s)	28
AcsI	RAATTY	2 cut(s)	211, 224
AdeI	CACNNNGTG	1 cut(s)	145
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	34
AflIII	ACRYGT	1 cut(s)	123
AgsI	TTSAA	2 cut(s)	82, 103
AluBI	AGCT	4 cut(s)	65, 116, 305, 320
AluI	AGCT	4 cut(s)	65, 116, 305, 320
Alw21I	GWGCWC	1 cut(s)	91
AoxI	GGCC	1 cut(s)	377
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	2 cut(s)	211, 224
Asp700I	GAANNNNTTC	1 cut(s)	312
AsuHPI	GGTGA	2 cut(s)	302, 307
AxyI	CCTNAGG	1 cut(s)	356
BaeGI	GKGCMC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	91
BbvCI	CCTCAGC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	52
BfaI	CTAG	2 cut(s)	113, 351
BfuAI	ACCTGC	1 cut(s)	372
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	362
BmrI	ACTGGG	2 cut(s)	194, 296
BmuI	ACTGGG	2 cut(s)	194, 296
Bpu10I	CCTNAGC	1 cut(s)	57
BsaAI	YACGTR	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	2 cut(s)	189, 291
Bse21I	CCTNAGG	1 cut(s)	356
BseDI	CCNNGG	1 cut(s)	219
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	2 cut(s)	189, 291
BseSI	GKGCMC	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	52
BshFI	GGCC	1 cut(s)	379
BsiHKAI	GWGCWC	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	34
BsnI	GGCC	1 cut(s)	379
Bsp1286I	GDGCHC	2 cut(s)	91, 141
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	1 cut(s)	379
BspCNI	CTCAG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	362
BspMI	ACCTGC	1 cut(s)	372
BsrI	ACTGG	2 cut(s)	189, 291
BssECI	CCNNGG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	198
Bst6I	CTCTTC	1 cut(s)	77
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstBAI	YACGTR	1 cut(s)	126
BstDEI	CTNAG	3 cut(s)	57, 130, 356
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 95, 346
BstSLI	GKGCMC	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	52
Bsu36I	CCTNAGG	1 cut(s)	356
BsuRI	GGCC	1 cut(s)	379
BtsIMutI	CAGTG	1 cut(s)	182
BveI	ACCTGC	1 cut(s)	372
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	1 cut(s)	233
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	3 cut(s)	57, 130, 356
DraI	TTTAAA	1 cut(s)	193
DraIII	CACNNNGTG	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Eco32I	GATATC	1 cut(s)	160
Eco81I	CCTNAGG	1 cut(s)	356
EcoRV	GATATC	1 cut(s)	160
FaeI	CATG	1 cut(s)	236
FaiI	YATR	4 cut(s)	25, 167, 172, 234
FatI	CATG	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	66
FspBI	CTAG	2 cut(s)	113, 351
GluI	GCNGC	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	379
Hin1II	CATG	1 cut(s)	236
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HinfI	GANTC	1 cut(s)	308
HphI	GGTGA	2 cut(s)	302, 307
Hpy166II	GTNNAC	2 cut(s)	48, 204
Hpy188I	TCNGA	1 cut(s)	223
Hpy8I	GTNNAC	2 cut(s)	48, 204
HpyAV	CCTTC	2 cut(s)	61, 351
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4IV	ACGT	1 cut(s)	125
HpyCH4V	TGCA	3 cut(s)	43, 68, 367
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 95, 346
HpyF3I	CTNAG	3 cut(s)	57, 130, 356
HpySE526I	ACGT	1 cut(s)	125
Hsp92II	CATG	1 cut(s)	236
LpnPI	CCDG	4 cut(s)	170, 272, 330, 377
Lsp1109I	GCAGC	1 cut(s)	52
MaeI	CTAG	2 cut(s)	113, 351
MaeII	ACGT	1 cut(s)	125
MaeIII	GTNAC	1 cut(s)	145
MboII	GAAGA	2 cut(s)	66, 94
MhlI	GDGCHC	2 cut(s)	91, 141
MluCI	AATT	6 cut(s)	69, 175, 211, 224, 254, 271
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	5 cut(s)	52, 229, 240, 286, 369
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	3 cut(s)	179, 192, 261
MspA1I	CMGCKG	1 cut(s)	320
MwoI	GCNNNNNNNGC	3 cut(s)	62, 95, 346
NlaIII	CATG	1 cut(s)	236
NlaIV	GGNNCC	1 cut(s)	362
NmuCI	GTSAC	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	308
PkrI	GCNGC	1 cut(s)	67
Ppu21I	YACGTR	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	362
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SaqAI	TTAA	3 cut(s)	179, 192, 261
SatI	GCNGC	1 cut(s)	66
SduI	GDGCHC	2 cut(s)	91, 141
SetI	ASST	9 cut(s)	53, 67, 118, 128, 221, 297, 307, 322, 366
Sse9I	AATT	6 cut(s)	69, 175, 211, 224, 254, 271
SsiI	CCGC	1 cut(s)	28
SspI	AATATT	1 cut(s)	9
SspMI	CTAG	2 cut(s)	113, 351
TaaI	ACNGT	1 cut(s)	198
TaiI	ACGT	1 cut(s)	128
TasI	AATT	6 cut(s)	69, 175, 211, 224, 254, 271
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	3 cut(s)	179, 192, 261
Tru9I	TTAA	3 cut(s)	179, 192, 261
TscAI	CASTG	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	12
TspRI	CASTG	1 cut(s)	189
XapI	RAATTY	2 cut(s)	211, 224
XmiI	GTMKAC	1 cut(s)	47
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	2 cut(s)	113, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.