Rmu_ssc0000189.1_g000051

Elongation factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000189.1
Physical Location & Seq
Forward (+)
343348 .. 347043
3696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000189.1_g000051.1.cds

Sequence Viewer

Length: 1461 bp
ctgcttccttctcagttcccctattatatcgtctctttgctctctcactcactcctccctccttctctgctctctcggaagaacgcttgcgcctcacagatctcaactctgtgcgattcgtttttccgtcaagccatggctctggtcctgcatgcagggagtacaaacaaaaatgcgtacaagactctcattgctgcagagtatacaggtgtgaaagttgcacttgcacccaactttgagatgggcgtctcgaacaagactcctgaatttctcaagatgaacccgattgggaaggttccggtgctggaaacacctgatggtcccatcttcgagagtaatgccattgcacgttacgttactcgcttgaaggctgacaatcctctttatggttcatcttcaattgattatgcccatatcgagcaatggattgattttggatccttggagattgatgctaacattgttaattggtttagaccaagaatgggaaggactgtctatcttcctccagcggaggaagctgcaattgctgcattgaagagagcactgggtgcattgaacacacaccttgcttcctgcacataccttgttggggattctgtcactcttgctgacatcattatgacatgcaatttgtttatgggcttcactaagctcatgactaagagcttcacttcagagtttcctcatgttgagagatacttctggaccatggtcaatcaaccaaacttcaaaaaggtattgggtgaggttaagcagacggattctgttcctgctgttcaatctgcaaagaagcctgcccaggccaaagaatctgctaaacccaaggctaaggaggagccaaagaaagaagccaagaaggagcaggcaaagcccaaagcagaagctgaggaggaagaggcaccaaagccaaaacccaagaatcctcttgatctgcttcccccgagtaagatgatattggatgactggaaaaggctttactctaacacgaagaccaacttccgtgaggtggcaattaaaggattctgggacatgtacgatcctgagggatattctctttggttctgtgattacaagtacaatgatgagaatactgtttccttcgtgacgctgaacaaggtcggtggatttctccagcggatggatctggcccgcaagtatgcttttgggaagatgctaattattggtgcagacccaccatacaaggtgaagggcttgtggctcttccgtggcccagaaatccctgaatttgtgatgaatgagtgctatgacatggagctttttgagtggaccaaggtcgacatctcagatgaaaaccaaaaggagcgtaatctgaggctccggaatgaaggacatgagggaagctcctctgctcgggtggatgtgatttatttgtcaggtgatatggaaaccgagaatactagagacagcgaaggtttttctatggacggtgctgcatga

Protein Analysis

486

Amino Acids

54.76

Weight (kDa)

6.42

Isoelectric Point (pI)

39.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 901
AccB7I CCANNNNNTGG 1 cut(s) 1141
AccI GTMKAC 2 cut(s) 203, 1299
AccIII TCCGGA 1 cut(s) 1341
AciI CCGC 3 cut(s) 512, 1138, 1153
AclWI GGATC 4 cut(s) 432, 445, 1034, 1152
AcsI RAATTY 2 cut(s) 266, 1247
AcuI CTGAAG 1 cut(s) 660
AcyI GRCGYC 1 cut(s) 246
AdeI CACNNNGTG 1 cut(s) 551
AfaI GTAC 4 cut(s) 163, 179, 1037, 1079
AfiI CCNNNNNNNGG 6 cut(s) 386, 485, 592, 1009, 1141, 1374
AflIII ACRYGT 1 cut(s) 1032
AgsI TTSAA 6 cut(s) 367, 399, 538, 559, 733, 782
AjnI CCWGG 1 cut(s) 801
AluBI AGCT 6 cut(s) 521, 655, 669, 887, 1279, 1365
AluI AGCT 6 cut(s) 521, 655, 669, 887, 1279, 1365
Alw21I GWGCWC 1 cut(s) 547
Alw26I GTCTC 3 cut(s) 37, 253, 1419
AlwI GGATC 4 cut(s) 432, 445, 1034, 1152
AlwNI CAGNNNCTG 1 cut(s) 887
Ama87I CYCGRG 2 cut(s) 943, 1374
Aor13HI TCCGGA 1 cut(s) 1341
AoxI GGCC 3 cut(s) 804, 1149, 1231
ApeKI GCWGC 4 cut(s) 194, 521, 530, 1454
ApoI RAATTY 2 cut(s) 266, 1247
ArsI GACNNNNNNTTYG 2 cut(s) 616, 648
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 6 cut(s) 145, 320, 708, 1150, 1232, 1290
AsuHPI GGTGA 3 cut(s) 758, 1219, 1412
AvaI CYCGRG 2 cut(s) 943, 1374
AvaII GGWCC 4 cut(s) 145, 320, 708, 1290
AxyI CCTNAGG 1 cut(s) 1044
BamHI GGATCC 1 cut(s) 437
BanI GGYRCC 1 cut(s) 901
BbsI GAAGAC 1 cut(s) 998
Bbv12I GWGCWC 1 cut(s) 547
BbvCI CCTCAGC 1 cut(s) 888
BbvI GCAGC 4 cut(s) 181, 508, 517, 1441
BccI CCATC 4 cut(s) 235, 311, 332, 1135
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BciT130I CCWGG 1 cut(s) 803
BcoDI GTCTC 3 cut(s) 37, 253, 1419
BfaI CTAG 1 cut(s) 1422
BfmI CTRYAG 1 cut(s) 195
BglII AGATCT 1 cut(s) 99
BisI GCNGC 4 cut(s) 195, 522, 531, 1455
BlsI GCNGC 4 cut(s) 196, 523, 532, 1456
Bme1390I CCNGG 1 cut(s) 803
Bme18I GGWCC 4 cut(s) 145, 320, 708, 1290
BmeT110I CYCGRG 2 cut(s) 943, 1374
BmgT120I GGNCC 6 cut(s) 145, 320, 708, 1150, 1232, 1290
BmiI GGNNCC 6 cut(s) 297, 322, 439, 840, 903, 1340
BmrFI CCNGG 1 cut(s) 803
BmrI ACTGGG 1 cut(s) 557
BmsI GCATC 2 cut(s) 442, 1164
BmuI ACTGGG 1 cut(s) 557
BoxI GACNNNNGTC 2 cut(s) 713, 1295
BpiI GAAGAC 1 cut(s) 998
BplI GAGNNNNNCTC 2 cut(s) 1349, 1381
BpmI CTGGAG 2 cut(s) 492, 1118
Bpu10I CCTNAGC 2 cut(s) 831, 888
BpuEI CTTGAG 1 cut(s) 257
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 7 cut(s) 135, 441, 711, 801, 825, 1228, 1293
BsaWI WCCGGW 2 cut(s) 298, 1341
Bsc4I CCNNNNNNNGG 6 cut(s) 386, 485, 592, 1009, 1141, 1374
Bse1I ACTGG 2 cut(s) 552, 971
Bse21I CCTNAGG 1 cut(s) 1044
Bse3DI GCAATG 3 cut(s) 189, 342, 428
BseAI TCCGGA 1 cut(s) 1341
BseBI CCWGG 1 cut(s) 803
BseDI CCNNGG 7 cut(s) 135, 441, 711, 801, 825, 1228, 1293
BseGI GGATG 3 cut(s) 967, 1146, 1387
BseLI CCNNNNNNNGG 6 cut(s) 386, 485, 592, 1009, 1141, 1374
BseMI GCAATG 3 cut(s) 189, 342, 428
BseMII CTCAG 5 cut(s) 26, 879, 1035, 1320, 1325
BseNI ACTGG 2 cut(s) 552, 971
BseRI GAGGAG 4 cut(s) 44, 851, 905, 1357
BseXI GCAGC 4 cut(s) 181, 508, 517, 1441
BsgI GTGCAG 2 cut(s) 562, 1209
BshFI GGCC 3 cut(s) 806, 1151, 1233
BshNI GGYRCC 1 cut(s) 901
BsiHKAI GWGCWC 1 cut(s) 547
BsiHKCI CYCGRG 2 cut(s) 943, 1374
BsiSI CCGG 2 cut(s) 299, 1342
BslFI GGGAC 2 cut(s) 306, 1043
BslI CCNNNNNNNGG 6 cut(s) 386, 485, 592, 1009, 1141, 1374
BsmAI GTCTC 3 cut(s) 37, 253, 1419
BsmBI CGTCTC 2 cut(s) 37, 253
BsmFI GGGAC 2 cut(s) 306, 1043
BsnI GGCC 3 cut(s) 806, 1151, 1233
BsoBI CYCGRG 2 cut(s) 943, 1374
Bsp1286I GDGCHC 1 cut(s) 547
Bsp13I TCCGGA 1 cut(s) 1341
Bsp143I GATC 5 cut(s) 99, 437, 931, 1039, 1144
Bsp19I CCATGG 2 cut(s) 135, 711
BspACI CCGC 3 cut(s) 512, 1138, 1153
BspANI GGCC 3 cut(s) 806, 1151, 1233
BspCNI CTCAG 5 cut(s) 25, 880, 1036, 1319, 1326
BspEI TCCGGA 1 cut(s) 1341
BspHI TCATGA 1 cut(s) 657
BspLI GGNNCC 6 cut(s) 297, 322, 439, 840, 903, 1340
BspMAI CTGCAG 1 cut(s) 199
BspPI GGATC 4 cut(s) 432, 445, 1034, 1152
BspQI GCTCTTC 1 cut(s) 1229
BspT107I GGYRCC 1 cut(s) 901
BsrDI GCAATG 3 cut(s) 189, 342, 428
BsrI ACTGG 2 cut(s) 552, 971
BssECI CCNNGG 7 cut(s) 135, 441, 711, 801, 825, 1228, 1293
BssMI GATC 5 cut(s) 99, 437, 931, 1039, 1144
BssNAI GTATAC 1 cut(s) 204
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 5 cut(s) 135, 441, 711, 825, 1293
Bst1107I GTATAC 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 803
Bst4CI ACNGT 3 cut(s) 496, 1096, 1451
Bst6I CTCTTC 3 cut(s) 533, 891, 1229
BstACI GRCGYC 1 cut(s) 246
BstAPI GCANNNNNTGC 2 cut(s) 530, 551
BstC8I GCNNGC 5 cut(s) 88, 153, 798, 867, 1153
BstDEI CTNAG 8 cut(s) 12, 651, 663, 831, 888, 1044, 1306, 1334
BstDSI CCRYGG 3 cut(s) 135, 711, 1228
BstF5I GGATG 3 cut(s) 967, 1146, 1387
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 5 cut(s) 102, 440, 934, 1042, 1147
BstMAI GTCTC 3 cut(s) 37, 253, 1419
BstMBI GATC 5 cut(s) 99, 437, 931, 1039, 1144
BstMWI GCNNNNNNNGC 5 cut(s) 518, 527, 530, 551, 871
BstNI CCWGG 1 cut(s) 803
BstNSI RCATGY 3 cut(s) 155, 630, 1036
BstPAI GACNNNNGTC 2 cut(s) 713, 1295
BstSCI CCNGG 1 cut(s) 801
BstSFI CTRYAG 1 cut(s) 195
BstV1I GCAGC 4 cut(s) 181, 508, 517, 1441
BstV2I GAAGAC 1 cut(s) 998
BstX2I RGATCY 3 cut(s) 99, 437, 1144
BstXI CCANNNNNNTGG 1 cut(s) 142
BstYI RGATCY 3 cut(s) 99, 437, 1144
BstZ17I GTATAC 1 cut(s) 204
Bsu36I CCTNAGG 1 cut(s) 1044
BsuRI GGCC 3 cut(s) 806, 1151, 1233
BtgI CCRYGG 3 cut(s) 135, 711, 1228
BtsCI GGATG 3 cut(s) 967, 1146, 1387
BtsIMutI CAGTG 1 cut(s) 545
Cac8I GCNNGC 5 cut(s) 88, 153, 798, 867, 1153
CaiI CAGNNNCTG 1 cut(s) 887
CciI TCATGA 1 cut(s) 657
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 6 cut(s) 145, 320, 708, 1150, 1232, 1290
CseI GACGC 2 cut(s) 235, 1117
Csp6I GTAC 4 cut(s) 162, 178, 1036, 1078
CspCI CAANNNNNGTGG 2 cut(s) 1105, 1140
CviQI GTAC 4 cut(s) 162, 178, 1036, 1078
DdeI CTNAG 8 cut(s) 12, 651, 663, 831, 888, 1044, 1306, 1334
DpnI GATC 5 cut(s) 101, 439, 933, 1041, 1146
DpnII GATC 5 cut(s) 99, 437, 931, 1039, 1144
DraIII CACNNNGTG 1 cut(s) 551
Eam1104I CTCTTC 3 cut(s) 533, 891, 1229
EarI CTCTTC 3 cut(s) 533, 891, 1229
Eco130I CCWWGG 5 cut(s) 135, 441, 711, 825, 1293
Eco47I GGWCC 4 cut(s) 145, 320, 708, 1290
Eco57I CTGAAG 1 cut(s) 660
Eco81I CCTNAGG 1 cut(s) 1044
Eco88I CYCGRG 2 cut(s) 943, 1374
EcoRII CCWGG 1 cut(s) 801
EcoT14I CCWWGG 5 cut(s) 135, 441, 711, 825, 1293
ErhI CCWWGG 5 cut(s) 135, 441, 711, 825, 1293
Esp3I CGTCTC 2 cut(s) 37, 253
FalI AAGNNNNNCTT 4 cut(s) 207, 239, 983, 1015
FaqI GGGAC 2 cut(s) 306, 1043
FauI CCCGC 1 cut(s) 1160
FblI GTMKAC 2 cut(s) 203, 1299
Fnu4HI GCNGC 4 cut(s) 195, 522, 531, 1455
FokI GGATG 3 cut(s) 974, 1153, 1394
Fsp4HI GCNGC 4 cut(s) 195, 522, 531, 1455
FspBI CTAG 1 cut(s) 1422
GlaI GCGC 1 cut(s) 91
GluI GCNGC 4 cut(s) 195, 522, 531, 1455
GsuI CTGGAG 2 cut(s) 492, 1118
HaeIII GGCC 3 cut(s) 806, 1151, 1233
HapII CCGG 2 cut(s) 299, 1342
HgaI GACGC 2 cut(s) 235, 1117
HhaI GCGC 1 cut(s) 92
Hin1I GRCGYC 1 cut(s) 246
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 1 cut(s) 1300
HindII GTYRAC 1 cut(s) 1300
HinfI GANTC 8 cut(s) 116, 184, 259, 596, 764, 812, 922, 1023
HpaII CCGG 2 cut(s) 299, 1342
HphI GGTGA 3 cut(s) 758, 1219, 1412
Hpy166II GTNNAC 3 cut(s) 204, 1290, 1300
Hpy188I TCNGA 4 cut(s) 78, 679, 1309, 1335
Hpy8I GTNNAC 3 cut(s) 204, 1290, 1300
HpyCH4III ACNGT 3 cut(s) 496, 1096, 1451
HpyCH4IV ACGT 2 cut(s) 349, 354
HpyF10VI GCNNNNNNNGC 5 cut(s) 518, 527, 530, 551, 871
HpyF3I CTNAG 8 cut(s) 12, 651, 663, 831, 888, 1044, 1306, 1334
HpySE526I ACGT 2 cut(s) 349, 354
Hsp92I GRCGYC 1 cut(s) 246
HspAI GCGC 1 cut(s) 90
Kpn2I TCCGGA 1 cut(s) 1341
Kzo9I GATC 5 cut(s) 99, 437, 931, 1039, 1144
LguI GCTCTTC 1 cut(s) 1229
LmnI GCTCC 6 cut(s) 838, 862, 1276, 1324, 1344, 1370
Lsp1109I GCAGC 4 cut(s) 181, 508, 517, 1441
LweI GCATC 2 cut(s) 442, 1164
MaeI CTAG 1 cut(s) 1422
MaeII ACGT 2 cut(s) 349, 354
MaeIII GTNAC 4 cut(s) 350, 355, 601, 1105
MalI GATC 5 cut(s) 101, 439, 933, 1041, 1146
MboI GATC 5 cut(s) 99, 437, 931, 1039, 1144
MboII GAAGA 9 cut(s) 91, 319, 387, 494, 550, 908, 1003, 1183, 1216
MfeI CAATTG 2 cut(s) 399, 525
MflI RGATCY 3 cut(s) 99, 437, 1144
MhlI GDGCHC 1 cut(s) 547
MluCI AATT 8 cut(s) 266, 399, 466, 525, 631, 1014, 1179, 1247
MlyI GAGTC 2 cut(s) 178, 253
MroI TCCGGA 1 cut(s) 1341
MseI TTAA 3 cut(s) 465, 753, 1017
MslI CAYNNNNRTG 1 cut(s) 620
MspA1I CMGCKG 2 cut(s) 512, 1138
MspI CCGG 2 cut(s) 299, 1342
MspR9I CCNGG 1 cut(s) 803
MunI CAATTG 2 cut(s) 399, 525
MvaI CCWGG 1 cut(s) 803
MwoI GCNNNNNNNGC 5 cut(s) 518, 527, 530, 551, 871
NcoI CCATGG 2 cut(s) 135, 711
NdeII GATC 5 cut(s) 99, 437, 931, 1039, 1144
NlaIV GGNNCC 6 cut(s) 297, 322, 439, 840, 903, 1340
NmuCI GTSAC 2 cut(s) 601, 1105
NspI RCATGY 3 cut(s) 155, 630, 1036
PaeI GCATGC 1 cut(s) 155
PagI TCATGA 1 cut(s) 657
PciI ACATGT 1 cut(s) 1032
PciSI GCTCTTC 1 cut(s) 1229
PfeI GAWTC 6 cut(s) 116, 596, 764, 812, 922, 1023
PflMI CCANNNNNTGG 1 cut(s) 1141
PkrI GCNGC 4 cut(s) 196, 523, 532, 1456
PleI GAGTC 2 cut(s) 178, 253
PpsI GAGTC 2 cut(s) 178, 253
PscI ACATGT 1 cut(s) 1032
PshAI GACNNNNGTC 2 cut(s) 713, 1295
Psp6I CCWGG 1 cut(s) 801
PspGI CCWGG 1 cut(s) 801
PspN4I GGNNCC 6 cut(s) 297, 322, 439, 840, 903, 1340
PspPI GGNCC 6 cut(s) 145, 320, 708, 1150, 1232, 1290
PstI CTGCAG 1 cut(s) 199
PstNI CAGNNNCTG 1 cut(s) 887
PsuI RGATCY 3 cut(s) 99, 437, 1144
RsaI GTAC 4 cut(s) 163, 179, 1037, 1079
RsaNI GTAC 4 cut(s) 162, 178, 1036, 1078
RseI CAYNNNNRTG 1 cut(s) 620
SalI GTCGAC 1 cut(s) 1298
SapI GCTCTTC 1 cut(s) 1229
SaqAI TTAA 3 cut(s) 465, 753, 1017
SatI GCNGC 4 cut(s) 195, 522, 531, 1455
Sau3AI GATC 5 cut(s) 99, 437, 931, 1039, 1144
Sau96I GGNCC 6 cut(s) 145, 320, 708, 1150, 1232, 1290
SchI GAGTC 2 cut(s) 178, 253
ScrFI CCNGG 1 cut(s) 803
SduI GDGCHC 1 cut(s) 547
SfaNI GCATC 2 cut(s) 442, 1164
SfcI CTRYAG 1 cut(s) 195
SinI GGWCC 4 cut(s) 145, 320, 708, 1290
SmiMI CAYNNNNRTG 1 cut(s) 620
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
SphI GCATGC 1 cut(s) 155
Sse9I AATT 8 cut(s) 266, 399, 466, 525, 631, 1014, 1179, 1247
SsiI CCGC 3 cut(s) 512, 1138, 1153
SspMI CTAG 1 cut(s) 1422
StyD4I CCNGG 1 cut(s) 801
StyI CCWWGG 5 cut(s) 135, 441, 711, 825, 1293
TaaI ACNGT 3 cut(s) 496, 1096, 1451
TaiI ACGT 2 cut(s) 352, 357
TaqI TCGA 4 cut(s) 251, 330, 417, 1299
TasI AATT 8 cut(s) 266, 399, 466, 525, 631, 1014, 1179, 1247
TatI WGTACW 2 cut(s) 161, 1077
TfiI GAWTC 6 cut(s) 116, 596, 764, 812, 922, 1023
Tru1I TTAA 3 cut(s) 465, 753, 1017
Tru9I TTAA 3 cut(s) 465, 753, 1017
TscAI CASTG 1 cut(s) 552
TseFI GTSAC 2 cut(s) 601, 1105
TseI GCWGC 4 cut(s) 194, 521, 530, 1454
Tsp45I GTSAC 2 cut(s) 601, 1105
TspDTI ATGAA 5 cut(s) 293, 381, 1271, 1326, 1362
TspGWI ACGGA 4 cut(s) 116, 776, 992, 1217
TspRI CASTG 1 cut(s) 552
Van91I CCANNNNNTGG 1 cut(s) 1141
VpaK11BI GGWCC 4 cut(s) 145, 320, 708, 1290
XapI RAATTY 2 cut(s) 266, 1247
XceI RCATGY 3 cut(s) 155, 630, 1036
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XmiI GTMKAC 2 cut(s) 203, 1299
XspI CTAG 1 cut(s) 1422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.