Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000992

Physical Location & Seq

Genomic Coordinates Forward (+)

36157385 .. 36159383

Gene Structure 1999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g36060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCTTTAGTGCTGCACGCCGGAAGCACCAACAAAAATGGTTTCAAGGCACTTATTGCTGCTGAGTTTAGTGGTGCCAAGGTTGAACTGGTCAAGAATTTCGAGATGGGTGTGTCCAACAAAAGTCCAAAGTTTCTCGAAATGAACCCCATTGGGAAGGTTCCTGTATTAGAAACACCTGATGGCCCTGTTTTTGAGAGCAATGCCATTGCACGCTACGTTACTCGGTTGAAGGCAGATAATCCTCTTTATGGTTCTTCCTTAATTGAATATGCTCGTGTGGAGCAATGGATTGATTTTGCCACACTGGAGATTGACGCCAATATTTTGCGATGGTTAATACCACGTATTGGTTTTTCTGTTTACCTTCCTCCGGTTGAGGAAGCTGCGGTTTCTGCATTGAAGAGAGCGCTAACTGCTTTGAACACTCATCTTTCTTCCAACACGTACCTGGTTGGGCATTCTGTCACTTTGGCTGATATCATTCTGACATGTAATTTGACTTTGGGATTTAGCAGGTTATTCACAAAAAGTTTTACCTCTGAATTTCCTCATGTTGAGAGATACTTTTGGACCTTAGTTAACCAACCAAATTTCCGCAAGATATTGGGTGAAGTTAAACAAGCAGAATCCGTTCCATCTATTCAATCAGTAAAGAAGCCGTCACAGGCGAAGGAACCTGCAAAACCTAAGGCCAAGGATGAGCCAAAGAAAGAGGACAAGAAAGAATCAGCAAAGCCTAAATTAGAAGAGGCTGCGGAAGAAGAGGCACCCAAGCCCAAGGCAAAGAATCCTCTTGATCTTTTGCCGCCTAGCAAGATGATTCTGGATGACTGGAAAAGACTTTACTCAAACACAAAGACCAACTTCCGTGAGGTTGCTGTTAAAGGTGATTCTTTATCACATACTATACACATGGCTTCACCCATTTCTTGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

314

Amino Acids

34.82

Weight (kDa)

9.06

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09640 AT1G57720 AT1G57720
fragaria_vesca	FvH4_5g28250 FvH4_5g28250 FvH4_5g32590 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560
malus_domestica	MD08G1244100.v1.1 MD15G1403200.v1.1 MD15G1438400.v1.1
prunus_persica	Prupe.1G549300_v2.0.a1 Prupe.1G549300_v2.0.a1 Prupe.1G581500_v2.0.a1 Prupe.1G581500_v2.0.a1
pyrus_communis	pycom08g21180 pycom15g36060 pycom15g38640
rosa_chinensis	RchiOBHm_Chr7g0220411 RchiOBHm_Chr7g0229581 RchiOBHm_Chr7g0229711 RchiOBHm_Chr7g0230101 RchiOBHm_Chr7g0230191
rosa_laevigata	RLG00000001508 RLG00000001510
rosa_multiflora	Rmu_sc0000693.1_g000058 Rmu_sc0000851.1_g000010 Rmu_sc0001621.1_g000005 Rmu_sc0001918.1_g000014 Rmu_sc0002666.1_g000007 Rmu_sc0002822.1_g000020 Rmu_sc0002822.1_g000031 Rmu_sc0004110.1_g000004 Rmu_ssc0000189.1_g000051
rosa_roxburghii	Rroxscaffold_3G00230290 Rroxscaffold_3G00230310 Rroxscaffold_3G00239390
rosa_rugosa	Rorug07G0193900 Rorug07G0259200 Rorug07G0259700 Rorug07G0259900 Rorug07G0260000
rosa_samantha	Rh7AG334900 Rh7AG408700 Rh7AG409300 Rh7AG409800 Rh7BG325900 Rh7BG387800 Rh7BG388100 Rh7BG388200 Rh7BG388600 Rh7CG352600 Rh7CG427700
rosa_wichuraiana	Rw0G018580 Rw0G022570 Rw7G028550 Rw7G033930 Rw7G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	507, 688
AccB1I	GGYRCC	2 cut(s)	74, 769
AccB7I	CCANNNNNTGG	1 cut(s)	350
AciI	CCGC	4 cut(s)	389, 598, 758, 809
AcsI	RAATTY	3 cut(s)	97, 545, 592
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	1 cut(s)	449
AfeI	AGCGCT	1 cut(s)	411
AfiI	CCNNNNNNNGG	3 cut(s)	251, 350, 373
AflIII	ACRYGT	2 cut(s)	444, 491
AgsI	TTSAA	7 cut(s)	46, 86, 232, 269, 403, 424, 647
AjnI	CCWGG	1 cut(s)	450
AluBI	AGCT	1 cut(s)	386
AluI	AGCT	1 cut(s)	386
Aor51HI	AGCGCT	1 cut(s)	411
AoxI	GGCC	2 cut(s)	184, 693
ApeKI	GCWGC	4 cut(s)	13, 59, 386, 755
ApoI	RAATTY	3 cut(s)	97, 545, 592
ArsI	GACNNNNNNTTYG	2 cut(s)	481, 513
Asp700I	GAANNNNTTC	1 cut(s)	633
AspLEI	GCGC	1 cut(s)	412
AspS9I	GGNCC	2 cut(s)	185, 573
AsuHPI	GGTGA	3 cut(s)	623, 902, 915
AvaII	GGWCC	1 cut(s)	573
AxyI	CCTNAGG	1 cut(s)	690
BanI	GGYRCC	2 cut(s)	74, 769
BauI	CACGAG	1 cut(s)	276
BbvI	GCAGC	3 cut(s)	46, 373, 742
BccI	CCATC	4 cut(s)	100, 176, 327, 646
BceAI	ACGGC	1 cut(s)	646
BciT130I	CCWGG	1 cut(s)	452
BfaI	CTAG	1 cut(s)	813
BfoI	RGCGCY	1 cut(s)	413
BfuAI	ACCTGC	2 cut(s)	507, 688
BisI	GCNGC	5 cut(s)	14, 60, 387, 756, 809
BlsI	GCNGC	5 cut(s)	15, 61, 388, 757, 810
Bme1390I	CCNGG	1 cut(s)	452
Bme18I	GGWCC	1 cut(s)	573
BmgT120I	GGNCC	2 cut(s)	185, 573
BmiI	GGNNCC	4 cut(s)	76, 162, 678, 771
BmrFI	CCNGG	1 cut(s)	452
BpmI	CTGGAG	1 cut(s)	329
BsaAI	YACGTR	2 cut(s)	347, 447
BsaHI	GRCGYC	1 cut(s)	318
BsaJI	CCNNGG	3 cut(s)	78, 696, 780
BsaWI	WCCGGW	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	3 cut(s)	251, 350, 373
Bse1I	ACTGG	3 cut(s)	93, 312, 839
Bse21I	CCTNAGG	1 cut(s)	690
Bse3DI	GCAATG	3 cut(s)	207, 208, 293
BseBI	CCWGG	1 cut(s)	452
BseDI	CCNNGG	3 cut(s)	78, 696, 780
BseGI	GGATG	2 cut(s)	706, 835
BseLI	CCNNNNNNNGG	3 cut(s)	251, 350, 373
BseMI	GCAATG	3 cut(s)	207, 208, 293
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	3 cut(s)	93, 312, 839
BseXI	GCAGC	3 cut(s)	46, 373, 742
BshFI	GGCC	2 cut(s)	186, 695
BshNI	GGYRCC	2 cut(s)	74, 769
BsiSI	CCGG	2 cut(s)	21, 374
BslI	CCNNNNNNNGG	3 cut(s)	251, 350, 373
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	2 cut(s)	186, 695
Bsp143I	GATC	1 cut(s)	799
BspACI	CCGC	4 cut(s)	389, 598, 758, 809
BspANI	GGCC	2 cut(s)	186, 695
BspCNI	CTCAG	1 cut(s)	55
BspLI	GGNNCC	4 cut(s)	76, 162, 678, 771
BspMI	ACCTGC	2 cut(s)	507, 688
BspT107I	GGYRCC	2 cut(s)	74, 769
BsrDI	GCAATG	3 cut(s)	207, 208, 293
BsrI	ACTGG	3 cut(s)	93, 312, 839
BssECI	CCNNGG	3 cut(s)	78, 696, 780
BssMI	GATC	1 cut(s)	799
BssNI	GRCGYC	1 cut(s)	318
BssSI	CACGAG	1 cut(s)	276
BssT1I	CCWWGG	3 cut(s)	78, 696, 780
Bst2BI	CACGAG	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	452
Bst6I	CTCTTC	3 cut(s)	398, 744, 759
BstACI	GRCGYC	1 cut(s)	318
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstBAI	YACGTR	2 cut(s)	347, 447
BstC8I	GCNNGC	2 cut(s)	18, 214
BstDEI	CTNAG	3 cut(s)	63, 577, 690
BstF5I	GGATG	2 cut(s)	706, 835
BstH2I	RGCGCY	1 cut(s)	413
BstHHI	GCGC	1 cut(s)	412
BstKTI	GATC	1 cut(s)	802
BstMBI	GATC	1 cut(s)	799
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 395, 416
BstNI	CCWGG	1 cut(s)	452
BstNSI	RCATGY	1 cut(s)	495
BstSCI	CCNGG	1 cut(s)	450
BstV1I	GCAGC	3 cut(s)	46, 373, 742
Bsu36I	CCTNAGG	1 cut(s)	690
BsuRI	GGCC	2 cut(s)	186, 695
BtgZI	GCGATG	1 cut(s)	346
BtsCI	GGATG	2 cut(s)	706, 835
BtsIMutI	CAGTG	1 cut(s)	305
BveI	ACCTGC	2 cut(s)	507, 688
Cac8I	GCNNGC	2 cut(s)	18, 214
CfoI	GCGC	1 cut(s)	412
Cfr13I	GGNCC	2 cut(s)	185, 573
CseI	GACGC	1 cut(s)	326
CsiI	ACCWGGT	1 cut(s)	450
Csp6I	GTAC	1 cut(s)	448
CviAII	CATG	3 cut(s)	492, 554, 916
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	3 cut(s)	63, 577, 690
DpnI	GATC	1 cut(s)	801
DpnII	GATC	1 cut(s)	799
Eam1104I	CTCTTC	3 cut(s)	398, 744, 759
EarI	CTCTTC	3 cut(s)	398, 744, 759
Eco130I	CCWWGG	3 cut(s)	78, 696, 780
Eco32I	GATATC	1 cut(s)	481
Eco47I	GGWCC	1 cut(s)	573
Eco47III	AGCGCT	1 cut(s)	411
Eco81I	CCTNAGG	1 cut(s)	690
EcoRII	CCWGG	1 cut(s)	450
EcoRV	GATATC	1 cut(s)	481
EcoT14I	CCWWGG	3 cut(s)	78, 696, 780
ErhI	CCWWGG	3 cut(s)	78, 696, 780
FaeI	CATG	3 cut(s)	495, 557, 919
FaiI	YATR	7 cut(s)	252, 273, 493, 555, 906, 911, 917
FalI	AAGNNNNNCTT	2 cut(s)	851, 883
FatI	CATG	3 cut(s)	491, 553, 915
Fnu4HI	GCNGC	5 cut(s)	14, 60, 387, 756, 809
FokI	GGATG	2 cut(s)	713, 842
Fsp4HI	GCNGC	5 cut(s)	14, 60, 387, 756, 809
FspBI	CTAG	1 cut(s)	813
GlaI	GCGC	1 cut(s)	411
GluI	GCNGC	5 cut(s)	14, 60, 387, 756, 809
GsuI	CTGGAG	1 cut(s)	329
HaeII	RGCGCY	1 cut(s)	413
HaeIII	GGCC	2 cut(s)	186, 695
HapII	CCGG	2 cut(s)	21, 374
HgaI	GACGC	1 cut(s)	326
HhaI	GCGC	1 cut(s)	412
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	3 cut(s)	495, 557, 919
Hin6I	GCGC	1 cut(s)	410
HinP1I	GCGC	1 cut(s)	410
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HinfI	GANTC	5 cut(s)	629, 728, 790, 823, 893
HpaI	GTTAAC	1 cut(s)	583
HpaII	CCGG	2 cut(s)	21, 374
HphI	GGTGA	3 cut(s)	623, 902, 915
Hpy166II	GTNNAC	2 cut(s)	364, 583
Hpy188I	TCNGA	2 cut(s)	489, 544
Hpy188III	TCNNGA	5 cut(s)	94, 103, 137, 797, 827
Hpy8I	GTNNAC	2 cut(s)	364, 583
HpyAV	CCTTC	4 cut(s)	151, 226, 377, 667
HpyCH4IV	ACGT	3 cut(s)	219, 346, 446
HpyCH4V	TGCA	4 cut(s)	16, 212, 398, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 395, 416
HpyF3I	CTNAG	3 cut(s)	63, 577, 690
HpySE526I	ACGT	3 cut(s)	219, 346, 446
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	3 cut(s)	495, 557, 919
HspAI	GCGC	1 cut(s)	410
KspAI	GTTAAC	1 cut(s)	583
Kzo9I	GATC	1 cut(s)	799
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	3 cut(s)	46, 373, 742
MabI	ACCWGGT	1 cut(s)	450
MaeI	CTAG	1 cut(s)	813
MaeII	ACGT	3 cut(s)	219, 346, 446
MaeIII	GTNAC	3 cut(s)	220, 466, 663
MalI	GATC	1 cut(s)	801
MboI	GATC	1 cut(s)	799
MboII	GAAGA	6 cut(s)	249, 415, 429, 761, 773, 776
MluCI	AATT	6 cut(s)	97, 264, 496, 545, 592, 743
MmeI	TCCRAC	2 cut(s)	141, 465
MroXI	GAANNNNTTC	1 cut(s)	633
MseI	TTAA	6 cut(s)	263, 338, 582, 618, 885, 940
MspI	CCGG	2 cut(s)	21, 374
MspR9I	CCNGG	1 cut(s)	452
Mva1269I	GAATGC	1 cut(s)	460
MvaI	CCWGG	1 cut(s)	452
MwoI	GCNNNNNNNGC	3 cut(s)	56, 395, 416
NdeII	GATC	1 cut(s)	799
NlaIII	CATG	3 cut(s)	495, 557, 919
NlaIV	GGNNCC	4 cut(s)	76, 162, 678, 771
NmuCI	GTSAC	2 cut(s)	466, 663
NspI	RCATGY	1 cut(s)	495
PciI	ACATGT	1 cut(s)	491
PctI	GAATGC	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	5 cut(s)	629, 728, 790, 823, 893
PflMI	CCANNNNNTGG	1 cut(s)	350
PkrI	GCNGC	5 cut(s)	15, 61, 388, 757, 810
Ppu21I	YACGTR	2 cut(s)	347, 447
PscI	ACATGT	1 cut(s)	491
Psp6I	CCWGG	1 cut(s)	450
PspGI	CCWGG	1 cut(s)	450
PspN4I	GGNNCC	4 cut(s)	76, 162, 678, 771
PspPI	GGNCC	2 cut(s)	185, 573
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
SaqAI	TTAA	6 cut(s)	263, 338, 582, 618, 885, 940
SatI	GCNGC	5 cut(s)	14, 60, 387, 756, 809
Sau3AI	GATC	1 cut(s)	799
Sau96I	GGNCC	2 cut(s)	185, 573
ScrFI	CCNGG	1 cut(s)	452
SexAI	ACCWGGT	1 cut(s)	450
SinI	GGWCC	1 cut(s)	573
Sse9I	AATT	6 cut(s)	97, 264, 496, 545, 592, 743
SsiI	CCGC	4 cut(s)	389, 598, 758, 809
SspI	AATATT	1 cut(s)	325
SspMI	CTAG	1 cut(s)	813
StyD4I	CCNGG	1 cut(s)	450
StyI	CCWWGG	3 cut(s)	78, 696, 780
TaiI	ACGT	3 cut(s)	222, 349, 449
TaqI	TCGA	2 cut(s)	102, 138
TasI	AATT	6 cut(s)	97, 264, 496, 545, 592, 743
TauI	GCSGC	1 cut(s)	811
TfiI	GAWTC	5 cut(s)	629, 728, 790, 823, 893
Tru1I	TTAA	6 cut(s)	263, 338, 582, 618, 885, 940
Tru9I	TTAA	6 cut(s)	263, 338, 582, 618, 885, 940
TscAI	CASTG	1 cut(s)	312
TseFI	GTSAC	2 cut(s)	466, 663
TseI	GCWGC	4 cut(s)	13, 59, 386, 755
Tsp45I	GTSAC	2 cut(s)	466, 663
TspDTI	ATGAA	1 cut(s)	158
TspGWI	ACGGA	2 cut(s)	622, 860
TspRI	CASTG	1 cut(s)	312
Van91I	CCANNNNNTGG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	573
XapI	RAATTY	3 cut(s)	97, 545, 592
XceI	RCATGY	1 cut(s)	495
XcmI	CCANNNNNNNNNTGG	2 cut(s)	85, 448
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.