Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000992

Physical Location & Seq

Genomic Coordinates Reverse (-)

24397312 .. 24399454

Gene Structure 2143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0259900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1821 bp

ATGACAGGGACAACAGTCCTTAACCACCAAACCCATCTCTTGTTACCTGCAAAAGATCCACCAGGGAGCCTAGAACTCCATTTCAGGTTGAAGGAGCAAGAAAGCTTGTCACTTTTGAAGAGATGCAAGAACATGGAGGAGTTCAAGCAAGTCCATTCCCATATTCTCAAGTTGGGTGTTTTCTGTGATTCTTTTGTTGCAGGCAATCTTGTGGCCACTTGTGCTCTCTCAGCATGGGGAAGCATGGACTATGCCTGCTCGATTTTCGAACAAATCGAGGAACCGGGTTCGTTTGTATGCAACACCATGATCAAAGGGCATGTGAAGGCTTTGAACTGGGATCAGGCATTGCTTGTTTACTGTGAAATGCTTGAGAGAGGAGCTGGACCTGACAATTTCACTTACCCAGTTGTTCTCAAGGCTTGTGCTTGGTTAGTGGCAATTGAGGAAGGGATGCAAATTCATGGGCATGTTTTCAAGCTTGGGCTTGAAAATGATGTGTTTGTGCAGAACAGTTTGATCAGCATGTATGGCAAGTGTGGTAAGGTACAACTTTCTCGTGCTGTTTTTGAGCAATTAATGGATCAAAAGAGTGTTGCTTCTTGGAGTGCTATAATTGCAGCTCATGCTAGTTTGGGTTTGTGGAGTGAGTGTTTGAAGCTTTTTGGGGATATGAGAAGGGAGGGTTTGAGGGCTGAAGAAAGTACATTAGTGAGTGTGCTCTCTGCTTGCACTCATTTGGGTGCACTTGATTTGGGAAGGTGCTGCCATGGATTTTTGTTGAGAAACATTAGTGCACTCAATGTGATAGTAGAGACTTCCTTAATAGACATGTATGTTAAGTGTGGGTGCCTAGAGAAAGGGTTGGGTCTATTCCAAAAGATGACCAAGAAGAACAAATTGTCTTACACTGTGGTGATCTGTGGGCTTGCTATCCATGGACATGGTAGGGAAGCTCTTGAGCTATACTCAGAGATGTTTCGAGAAGGTTTGAGACCTGATGATGTTGTCCATGTGGGTTTACTAAGCGCTTGTAATCATGCCGGCCTAGTACAGGAGGGTCTCCAATGTTTCAAAACGATGAAATATGAGCATAAAATTCAACCTACAATTCAACACTATGGTTGCCTGGTAGACCTCATAGGCAGAGCAGGAAGGCTTGAGGAAGCAATGCAGCTCATCAATAGCATGCCCATTACGCCAAATGACGTCATATGGCGAAGCCTTCTTAGTGCTTGTAGAGTTCATAAAAACCTGGAAATTGGGGAGTTTGCAGCTAACAAGCTGTTCCAATTGAACATGCATAACCCTAGTGATTATGTGGTCCTATCGAATATGTATGCACAAGCTCAAAGATGGGACAATGTGGCAAGAATTAGAACAGAAATGGCTTCCAAGGGCTTGACACAAACACCTGGAAGTAGCTTGGTTGAGGTGAAGAGAGAAGTGCACAAGTTTGTTTCACAAGACATGTCACACCCCCAATGTAAGTGCGTTTACGAGATGATACACCAGATGGAATGGCAATTGAGATTTGAAGGCTATTCTGCAGACACGACTCAAGTACTGCTAGATGTAGATGAAGAAGAGAAGAGAGAGAGGTTAAAGTATCACAGTCAGAAGTTAGCAATTGCTTTTGCACTCATACATACATCTCAGGGATCTCCTATAAGAATAGTTAGAAACCTCAGGATGTGTAGTGACTGTCACACGTACACTAAATTTATATCAATGATCTATCAAAGGCAAATTACTGTAAGAGATCGAAACAGGTTCCACCATTTTGAAGATGGAATTTGCTCTTGTAAAGACTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

606

Amino Acids

68.61

Weight (kDa)

7.11

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	95 - 143	4.1e-11	PPR repeat family
PPR_2	PF13041	301 - 345	2.5e-07	PPR repeat family
E_motif	PF20431	416 - 478	4.6e-19	E motif
DYW_deaminase	PF14432	514 - 606	4.8e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09640 AT1G57720 AT1G57720
fragaria_vesca	FvH4_5g28250 FvH4_5g28250 FvH4_5g32590 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560
malus_domestica	MD08G1244100.v1.1 MD15G1403200.v1.1 MD15G1438400.v1.1
prunus_persica	Prupe.1G549300_v2.0.a1 Prupe.1G549300_v2.0.a1 Prupe.1G581500_v2.0.a1 Prupe.1G581500_v2.0.a1
pyrus_communis	pycom08g21180 pycom15g36060 pycom15g38640
rosa_chinensis	RchiOBHm_Chr7g0220411 RchiOBHm_Chr7g0229581 RchiOBHm_Chr7g0229711 RchiOBHm_Chr7g0230101 RchiOBHm_Chr7g0230191
rosa_laevigata	RLG00000001508 RLG00000001510
rosa_multiflora	Rmu_sc0000693.1_g000058 Rmu_sc0000851.1_g000010 Rmu_sc0001621.1_g000005 Rmu_sc0001918.1_g000014 Rmu_sc0002666.1_g000007 Rmu_sc0002822.1_g000020 Rmu_sc0002822.1_g000031 Rmu_sc0004110.1_g000004 Rmu_ssc0000189.1_g000051
rosa_roxburghii	Rroxscaffold_3G00230290 Rroxscaffold_3G00230310 Rroxscaffold_3G00239390
rosa_rugosa	Rorug07G0193900 Rorug07G0259200 Rorug07G0259700 Rorug07G0259900 Rorug07G0260000
rosa_samantha	Rh7AG334900 Rh7AG408700 Rh7AG409300 Rh7AG409800 Rh7BG325900 Rh7BG387800 Rh7BG388100 Rh7BG388200 Rh7BG388600 Rh7CG352600 Rh7CG427700
rosa_wichuraiana	Rw0G018580 Rw0G022570 Rw7G028550 Rw7G033930 Rw7G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1212
Acc36I	ACCTGC	1 cut(s)	55
AccB1I	GGYRCC	1 cut(s)	849
AccI	GTMKAC	1 cut(s)	1134
AclWI	GGATC	4 cut(s)	50, 348, 591, 1669
AcoI	YGGCCR	1 cut(s)	213
AcsI	RAATTY	4 cut(s)	459, 1098, 1721, 1794
AcuI	CTGAAG	1 cut(s)	717
AcyI	GRCGYC	1 cut(s)	1209
AfaI	GTAC	5 cut(s)	549, 706, 1053, 1566, 1715
AfeI	AGCGCT	1 cut(s)	1030
AfiI	CCNNNNNNNGG	1 cut(s)	1054
AflIII	ACRYGT	3 cut(s)	831, 1470, 1710
AjnI	CCWGG	4 cut(s)	61, 1128, 1254, 1414
AleI	CACNNNNGTG	1 cut(s)	914
Alw21I	GWGCWC	5 cut(s)	226, 723, 748, 799, 1452
Alw26I	GTCTC	3 cut(s)	809, 988, 1067
Alw44I	GTGCAC	3 cut(s)	744, 795, 1448
AlwI	GGATC	4 cut(s)	50, 348, 591, 1669
Aor51HI	AGCGCT	1 cut(s)	1030
AoxI	GGCC	2 cut(s)	213, 1045
ApaLI	GTGCAC	3 cut(s)	744, 795, 1448
ApeKI	GCWGC	4 cut(s)	620, 765, 1174, 1274
ApoI	RAATTY	4 cut(s)	459, 1098, 1721, 1794
AseI	ATTAAT	1 cut(s)	578
AspLEI	GCGC	1 cut(s)	1031
AspS9I	GGNCC	2 cut(s)	386, 1324
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	2 cut(s)	928, 1447
AsuII	TTCGAA	1 cut(s)	267
AvaII	GGWCC	2 cut(s)	386, 1324
AxyI	CCTNAGG	1 cut(s)	1688
BaeGI	GKGCMC	3 cut(s)	748, 799, 1452
BalI	TGGCCA	1 cut(s)	215
BanI	GGYRCC	1 cut(s)	849
BauI	CACGAG	1 cut(s)	558
Bbv12I	GWGCWC	5 cut(s)	226, 723, 748, 799, 1452
BbvI	GCAGC	4 cut(s)	632, 752, 1186, 1286
BccI	CCATC	4 cut(s)	42, 1350, 1510, 1784
BciT130I	CCWGG	4 cut(s)	63, 1130, 1256, 1416
BclI	TGATCA	2 cut(s)	309, 519
BcnI	CCSGG	1 cut(s)	285
BcoDI	GTCTC	3 cut(s)	809, 988, 1067
BfaI	CTAG	6 cut(s)	71, 630, 854, 1049, 1311, 1571
BfmI	CTRYAG	1 cut(s)	1548
BfoI	RGCGCY	1 cut(s)	1032
BfuAI	ACCTGC	1 cut(s)	55
BisI	GCNGC	4 cut(s)	621, 766, 1175, 1275
BlsI	GCNGC	4 cut(s)	622, 767, 1176, 1276
BmcAI	AGTACT	1 cut(s)	1566
Bme1390I	CCNGG	5 cut(s)	63, 285, 1130, 1256, 1416
Bme18I	GGWCC	2 cut(s)	386, 1324
BmgT120I	GGNCC	2 cut(s)	386, 1324
BmiI	GGNNCC	4 cut(s)	68, 282, 851, 1775
BmrFI	CCNGG	5 cut(s)	63, 285, 1130, 1256, 1416
BmrI	ACTGGG	2 cut(s)	346, 401
BmsI	GCATC	2 cut(s)	113, 444
BmuI	ACTGGG	2 cut(s)	346, 401
BoxI	GACNNNNGTC	1 cut(s)	14
BplI	GAGNNNNNCTC	2 cut(s)	953, 985
Bpu14I	TTCGAA	1 cut(s)	267
BpuEI	CTTGAG	6 cut(s)	152, 392, 401, 980, 1181, 1545
BpuMI	CCSGG	1 cut(s)	285
BsaAI	YACGTR	1 cut(s)	1713
BsaHI	GRCGYC	1 cut(s)	1209
BsaI	GGTCTC	2 cut(s)	988, 1067
BsaJI	CCNNGG	4 cut(s)	62, 769, 937, 1395
BsaXI	ACNNNNNCTCC	2 cut(s)	637, 667
Bsc4I	CCNNNNNNNGG	1 cut(s)	1054
Bse118I	RCCGGY	1 cut(s)	1043
Bse1I	ACTGG	3 cut(s)	341, 407, 1820
Bse21I	CCTNAGG	1 cut(s)	1688
Bse3DI	GCAATG	2 cut(s)	347, 1176
BseBI	CCWGG	4 cut(s)	63, 1130, 1256, 1416
BseDI	CCNNGG	4 cut(s)	62, 769, 937, 1395
BseGI	GGATG	2 cut(s)	459, 1698
BseLI	CCNNNNNNNGG	1 cut(s)	1054
BseMI	GCAATG	2 cut(s)	347, 1176
BseMII	CTCAG	4 cut(s)	243, 984, 1670, 1702
BseNI	ACTGG	3 cut(s)	341, 407, 1820
BseRI	GAGGAG	2 cut(s)	152, 393
BseSI	GKGCMC	3 cut(s)	748, 799, 1452
BseXI	GCAGC	4 cut(s)	632, 752, 1186, 1286
BsgI	GTGCAG	1 cut(s)	527
BshFI	GGCC	2 cut(s)	215, 1047
BshNI	GGYRCC	1 cut(s)	849
BsiHKAI	GWGCWC	5 cut(s)	226, 723, 748, 799, 1452
BsiSI	CCGG	2 cut(s)	284, 1044
BslFI	GGGAC	2 cut(s)	22, 1373
BslI	CCNNNNNNNGG	1 cut(s)	1054
BsmAI	GTCTC	3 cut(s)	809, 988, 1067
BsmFI	GGGAC	2 cut(s)	22, 1373
BsnI	GGCC	2 cut(s)	215, 1047
Bso31I	GGTCTC	2 cut(s)	988, 1067
Bsp119I	TTCGAA	1 cut(s)	267
Bsp1286I	GDGCHC	5 cut(s)	226, 723, 748, 799, 1452
Bsp143I	GATC	9 cut(s)	55, 309, 340, 519, 583, 918, 1661, 1734, 1762
Bsp19I	CCATGG	2 cut(s)	769, 937
BspANI	GGCC	2 cut(s)	215, 1047
BspCNI	CTCAG	4 cut(s)	242, 983, 1669, 1701
BspLI	GGNNCC	4 cut(s)	68, 282, 851, 1775
BspMAI	CTGCAG	1 cut(s)	1552
BspMI	ACCTGC	1 cut(s)	55
BspPI	GGATC	4 cut(s)	50, 348, 591, 1669
BspT104I	TTCGAA	1 cut(s)	267
BspT107I	GGYRCC	1 cut(s)	849
BspTNI	GGTCTC	2 cut(s)	988, 1067
BsrDI	GCAATG	2 cut(s)	347, 1176
BsrFI	RCCGGY	1 cut(s)	1043
BsrI	ACTGG	3 cut(s)	341, 407, 1820
BssAI	RCCGGY	1 cut(s)	1043
BssECI	CCNNGG	4 cut(s)	62, 769, 937, 1395
BssMI	GATC	9 cut(s)	55, 309, 340, 519, 583, 918, 1661, 1734, 1762
BssNI	GRCGYC	1 cut(s)	1209
BssSI	CACGAG	1 cut(s)	558
BssT1I	CCWWGG	3 cut(s)	769, 937, 1395
Bst2BI	CACGAG	1 cut(s)	558
Bst2UI	CCWGG	4 cut(s)	63, 1130, 1256, 1416
Bst4CI	ACNGT	7 cut(s)	16, 362, 515, 913, 1616, 1706, 1756
Bst6I	CTCTTC	4 cut(s)	113, 1433, 1581, 1586
BstACI	GRCGYC	1 cut(s)	1209
BstAPI	GCANNNNNTGC	1 cut(s)	626
BstBAI	YACGTR	1 cut(s)	1713
BstBI	TTCGAA	1 cut(s)	267
BstC8I	GCNNGC	6 cut(s)	202, 256, 730, 930, 1045, 1190
BstDEI	CTNAG	6 cut(s)	229, 970, 1025, 1229, 1656, 1688
BstDSI	CCRYGG	2 cut(s)	769, 937
BstENI	CCTNNNNNAGG	1 cut(s)	1052
BstF5I	GGATG	2 cut(s)	459, 1698
BstH2I	RGCGCY	1 cut(s)	1032
BstHHI	GCGC	1 cut(s)	1031
BstKTI	GATC	9 cut(s)	58, 312, 343, 522, 586, 921, 1664, 1737, 1765
BstMAI	GTCTC	3 cut(s)	809, 988, 1067
BstMBI	GATC	9 cut(s)	55, 309, 340, 519, 583, 918, 1661, 1734, 1762
BstMWI	GCNNNNNNNGC	6 cut(s)	221, 230, 531, 617, 626, 1198
BstNI	CCWGG	4 cut(s)	63, 1130, 1256, 1416
BstNSI	RCATGY	7 cut(s)	323, 473, 529, 835, 1192, 1303, 1474
BstPAI	GACNNNNGTC	1 cut(s)	14
BstSCI	CCNGG	5 cut(s)	61, 283, 1128, 1254, 1414
BstSFI	CTRYAG	1 cut(s)	1548
BstSLI	GKGCMC	3 cut(s)	748, 799, 1452
BstV1I	GCAGC	4 cut(s)	632, 752, 1186, 1286
BstX2I	RGATCY	2 cut(s)	55, 1661
BstXI	CCANNNNNNTGG	1 cut(s)	944
BstYI	RGATCY	2 cut(s)	55, 1661
Bsu36I	CCTNAGG	1 cut(s)	1688
BsuRI	GGCC	2 cut(s)	215, 1047
BtgI	CCRYGG	2 cut(s)	769, 937
BtsCI	GGATG	2 cut(s)	459, 1698
BtsIMutI	CAGTG	1 cut(s)	909
BveI	ACCTGC	1 cut(s)	55
Cac8I	GCNNGC	6 cut(s)	202, 256, 730, 930, 1045, 1190
CfoI	GCGC	1 cut(s)	1031
Cfr10I	RCCGGY	1 cut(s)	1043
Cfr13I	GGNCC	2 cut(s)	386, 1324
Csp6I	GTAC	5 cut(s)	548, 705, 1052, 1565, 1714
CviQI	GTAC	5 cut(s)	548, 705, 1052, 1565, 1714
DdeI	CTNAG	6 cut(s)	229, 970, 1025, 1229, 1656, 1688
DpnI	GATC	9 cut(s)	57, 311, 342, 521, 585, 920, 1663, 1736, 1764
DpnII	GATC	9 cut(s)	55, 309, 340, 519, 583, 918, 1661, 1734, 1762
EaeI	YGGCCR	1 cut(s)	213
Eam1104I	CTCTTC	4 cut(s)	113, 1433, 1581, 1586
EarI	CTCTTC	4 cut(s)	113, 1433, 1581, 1586
Eco130I	CCWWGG	3 cut(s)	769, 937, 1395
Eco31I	GGTCTC	2 cut(s)	988, 1067
Eco47I	GGWCC	2 cut(s)	386, 1324
Eco47III	AGCGCT	1 cut(s)	1030
Eco57I	CTGAAG	1 cut(s)	717
Eco81I	CCTNAGG	1 cut(s)	1688
EcoNI	CCTNNNNNAGG	1 cut(s)	1052
EcoRII	CCWGG	4 cut(s)	61, 1128, 1254, 1414
EcoT14I	CCWWGG	3 cut(s)	769, 937, 1395
EcoT22I	ATGCAT	1 cut(s)	1305
ErhI	CCWWGG	3 cut(s)	769, 937, 1395
FaqI	GGGAC	2 cut(s)	22, 1373
FauNDI	CATATG	1 cut(s)	1214
FbaI	TGATCA	2 cut(s)	309, 519
FblI	GTMKAC	1 cut(s)	1134
Fnu4HI	GCNGC	4 cut(s)	621, 766, 1175, 1275
FokI	GGATG	2 cut(s)	466, 1705
Fsp4HI	GCNGC	4 cut(s)	621, 766, 1175, 1275
FspBI	CTAG	6 cut(s)	71, 630, 854, 1049, 1311, 1571
GlaI	GCGC	1 cut(s)	1030
GluI	GCNGC	4 cut(s)	621, 766, 1175, 1275
HaeII	RGCGCY	1 cut(s)	1032
HaeIII	GGCC	2 cut(s)	215, 1047
HapII	CCGG	2 cut(s)	284, 1044
HhaI	GCGC	1 cut(s)	1031
Hin1I	GRCGYC	1 cut(s)	1209
Hin6I	GCGC	1 cut(s)	1029
HinP1I	GCGC	1 cut(s)	1029
HindIII	AAGCTT	3 cut(s)	103, 479, 659
HinfI	GANTC	2 cut(s)	188, 1558
HpaII	CCGG	2 cut(s)	284, 1044
HphI	GGTGA	2 cut(s)	928, 1447
Hpy166II	GTNNAC	8 cut(s)	358, 746, 797, 1022, 1135, 1450, 1498, 1716
Hpy188I	TCNGA	2 cut(s)	973, 1620
Hpy188III	TCNNGA	3 cut(s)	959, 983, 1690
Hpy8I	GTNNAC	8 cut(s)	358, 746, 797, 1022, 1135, 1450, 1498, 1716
HpyAV	CCTTC	9 cut(s)	85, 319, 443, 672, 753, 980, 1149, 1235, 1532
HpyCH4III	ACNGT	7 cut(s)	16, 362, 515, 913, 1616, 1706, 1756
HpyCH4IV	ACGT	2 cut(s)	1209, 1712
HpyF10VI	GCNNNNNNNGC	6 cut(s)	221, 230, 531, 617, 626, 1198
HpyF3I	CTNAG	6 cut(s)	229, 970, 1025, 1229, 1656, 1688
HpySE526I	ACGT	2 cut(s)	1209, 1712
Hsp92I	GRCGYC	1 cut(s)	1209
HspAI	GCGC	1 cut(s)	1029
KroI	GCCGGC	1 cut(s)	1043
KroNI	GCCGGC	1 cut(s)	1045
Ksp22I	TGATCA	2 cut(s)	309, 519
Kzo9I	GATC	9 cut(s)	55, 309, 340, 519, 583, 918, 1661, 1734, 1762
LmnI	GCTCC	3 cut(s)	66, 94, 380
Lsp1109I	GCAGC	4 cut(s)	632, 752, 1186, 1286
LweI	GCATC	2 cut(s)	113, 444
MaeI	CTAG	6 cut(s)	71, 630, 854, 1049, 1311, 1571
MaeII	ACGT	2 cut(s)	1209, 1712
MaeIII	GTNAC	5 cut(s)	42, 108, 1473, 1700, 1706
MalI	GATC	9 cut(s)	57, 311, 342, 521, 585, 920, 1663, 1736, 1764
MboI	GATC	9 cut(s)	55, 309, 340, 519, 583, 918, 1661, 1734, 1762
MboII	GAAGA	8 cut(s)	130, 710, 904, 1450, 1595, 1598, 1603, 1799
MfeI	CAATTG	4 cut(s)	441, 1292, 1526, 1629
MflI	RGATCY	2 cut(s)	55, 1661
MhlI	GDGCHC	5 cut(s)	226, 723, 748, 799, 1452
MlsI	TGGCCA	1 cut(s)	215
MluNI	TGGCCA	1 cut(s)	215
MlyI	GAGTC	1 cut(s)	1552
Mox20I	TGGCCA	1 cut(s)	215
Mph1103I	ATGCAT	1 cut(s)	1305
MroNI	GCCGGC	1 cut(s)	1043
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	5 cut(s)	21, 578, 824, 840, 1604
MslI	CAYNNNNRTG	4 cut(s)	468, 741, 914, 942
Msp20I	TGGCCA	1 cut(s)	215
MspI	CCGG	2 cut(s)	284, 1044
MspR9I	CCNGG	5 cut(s)	63, 285, 1130, 1256, 1416
MunI	CAATTG	4 cut(s)	441, 1292, 1526, 1629
MvaI	CCWGG	4 cut(s)	63, 1130, 1256, 1416
MwoI	GCNNNNNNNGC	6 cut(s)	221, 230, 531, 617, 626, 1198
NaeI	GCCGGC	1 cut(s)	1045
NciI	CCSGG	1 cut(s)	285
NcoI	CCATGG	2 cut(s)	769, 937
NdeI	CATATG	1 cut(s)	1214
NdeII	GATC	9 cut(s)	55, 309, 340, 519, 583, 918, 1661, 1734, 1762
NgoMIV	GCCGGC	1 cut(s)	1043
NlaIV	GGNNCC	4 cut(s)	68, 282, 851, 1775
NmuCI	GTSAC	4 cut(s)	108, 1473, 1700, 1706
NsiI	ATGCAT	1 cut(s)	1305
NspI	RCATGY	7 cut(s)	323, 473, 529, 835, 1192, 1303, 1474
NspV	TTCGAA	1 cut(s)	267
OliI	CACNNNNGTG	1 cut(s)	914
PaeI	GCATGC	1 cut(s)	1192
PciI	ACATGT	2 cut(s)	831, 1470
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PdiI	GCCGGC	1 cut(s)	1045
PfeI	GAWTC	1 cut(s)	188
PkrI	GCNGC	4 cut(s)	622, 767, 1176, 1276
PleI	GAGTC	1 cut(s)	1552
PpsI	GAGTC	1 cut(s)	1552
Ppu21I	YACGTR	1 cut(s)	1713
PscI	ACATGT	2 cut(s)	831, 1470
PshAI	GACNNNNGTC	1 cut(s)	14
PshBI	ATTAAT	1 cut(s)	578
Psp6I	CCWGG	4 cut(s)	61, 1128, 1254, 1414
PspGI	CCWGG	4 cut(s)	61, 1128, 1254, 1414
PspN4I	GGNNCC	4 cut(s)	68, 282, 851, 1775
PspPI	GGNCC	2 cut(s)	386, 1324
PstI	CTGCAG	1 cut(s)	1552
PsuI	RGATCY	2 cut(s)	55, 1661
RsaI	GTAC	5 cut(s)	549, 706, 1053, 1566, 1715
RsaNI	GTAC	5 cut(s)	548, 705, 1052, 1565, 1714
RseI	CAYNNNNRTG	4 cut(s)	468, 741, 914, 942
SaqAI	TTAA	5 cut(s)	21, 578, 824, 840, 1604
SatI	GCNGC	4 cut(s)	621, 766, 1175, 1275
Sau3AI	GATC	9 cut(s)	55, 309, 340, 519, 583, 918, 1661, 1734, 1762
Sau96I	GGNCC	2 cut(s)	386, 1324
ScaI	AGTACT	1 cut(s)	1566
SchI	GAGTC	1 cut(s)	1552
ScrFI	CCNGG	5 cut(s)	63, 285, 1130, 1256, 1416
SduI	GDGCHC	5 cut(s)	226, 723, 748, 799, 1452
SfaNI	GCATC	2 cut(s)	113, 444
SfcI	CTRYAG	1 cut(s)	1548
SfuI	TTCGAA	1 cut(s)	267
SinI	GGWCC	2 cut(s)	386, 1324
SmiMI	CAYNNNNRTG	4 cut(s)	468, 741, 914, 942
SmlI	CTYRAG	6 cut(s)	167, 371, 416, 959, 1160, 1560
SmoI	CTYRAG	6 cut(s)	167, 371, 416, 959, 1160, 1560
SphI	GCATGC	1 cut(s)	1192
SspMI	CTAG	6 cut(s)	71, 630, 854, 1049, 1311, 1571
StyD4I	CCNGG	5 cut(s)	61, 283, 1128, 1254, 1414
StyI	CCWWGG	3 cut(s)	769, 937, 1395
TaaI	ACNGT	7 cut(s)	16, 362, 515, 913, 1616, 1706, 1756
TaiI	ACGT	2 cut(s)	1212, 1715
TaqI	TCGA	6 cut(s)	260, 267, 276, 982, 1331, 1765
TatI	WGTACW	3 cut(s)	704, 1051, 1564
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	5 cut(s)	21, 578, 824, 840, 1604
Tru9I	TTAA	5 cut(s)	21, 578, 824, 840, 1604
TscAI	CASTG	1 cut(s)	916
TseFI	GTSAC	4 cut(s)	108, 1473, 1700, 1706
TseI	GCWGC	4 cut(s)	620, 765, 1174, 1274
Tsp45I	GTSAC	4 cut(s)	108, 1473, 1700, 1706
TspDTI	ATGAA	4 cut(s)	452, 1097, 1235, 1596
TspRI	CASTG	1 cut(s)	916
VneI	GTGCAC	3 cut(s)	744, 795, 1448
VpaK11BI	GGWCC	2 cut(s)	386, 1324
VspI	ATTAAT	1 cut(s)	578
XagI	CCTNNNNNAGG	1 cut(s)	1052
XapI	RAATTY	4 cut(s)	459, 1098, 1721, 1794
XceI	RCATGY	7 cut(s)	323, 473, 529, 835, 1192, 1303, 1474
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1787
XmiI	GTMKAC	1 cut(s)	1134
XspI	CTAG	6 cut(s)	71, 630, 854, 1049, 1311, 1571
ZraI	GACGTC	1 cut(s)	1210
ZrmI	AGTACT	1 cut(s)	1566
Zsp2I	ATGCAT	1 cut(s)	1305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.