Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000992

Physical Location & Seq

Genomic Coordinates Reverse (-)

54581504 .. 54584515

Gene Structure 3012 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG409300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGTCTCTGGTGTTGCATGATTGGAAGACCAATAAAAATGGTTGCAAGGCACGTATTGCTGCCGAGTACAGTGGTGTGAACCTTGAATTGGTGAAAATTTTTGAGATGGGGATGTCCAATAAGACTGCCAATTTTCTCAAATTGACCCCTATTGGGAAGCTTCCTTTGTTAGAAACACCTGTTGGTCCTGTTTTTGAGAGCAATGCCATTGCACGCTATGTTACTAGCTTGAAAGCGGATAATCCTCTTTTTGCCCTTGTGGAGAAATGGATAGATTTTGCATCTTTGGAGATTGATGCCAATATGTTGCGATGGTTGAAACAGCGTATGGGTTATGCTGTTTACCTTCCTCTGGATGAGGAAGCGGCAATTTCTTCCTTGAAGAGAGCACTAACTGCTTTGAACATTCATCTTGCTTCCAACACGTACCTGGTTGGGCATTCTATCACGTTGGCTGATATCATTATGACATGTAATCTGAAGCCGGGATTTAGTTGGTTATTAACAAAAAGTTTTACATCTGAATTTCCTCATGTTGAGAGATACTTTTGGACATTGGTTAATCTTCCTAATTTTTGCAAGATATTGGGGGAGGTGAAACAAGCAGAATCTATTCCAGCTGTTCAGTTAGTGATGAAGCCTTCACAGCCTAAGGAATCTGCAGAAACAAAGGTCAAGGTTCAGACGAATAAAGAGGCCGAGAAAGAACCAACAGAACCTAAAGTAGAAGAATCTGCTCAGGAAGAGGAGGCACCCAAGCCCAAGGCAAAGAATCCTCTTGATCTTTTGCCTCCTAGCAAGATGATACTGGATGAATGGAAAAGACTTCATTCAAACACAAAGACCAACTTCCGTGAGGTTGCTGTTAAAGGATTCTGGGAAATGTATGATCCCGAAGGTACAATGATGAAAATACTGTTTGGTTTTGCGAGTACAAGTACAATGATGAAAATACTGTTTCATTCGTCACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

324

Amino Acids

36.59

Weight (kDa)

8.24

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	2 - 75	3.9e-11	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	5 - 81	3.2e-06	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	16 - 75	4.4e-06	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	124 - 190	4.8e-08	Glutathione S-transferase, C-terminal domain
EF1G	PF00647	255 - 301	7.3e-10	Elongation factor 1 gamma, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09640 AT1G57720 AT1G57720
fragaria_vesca	FvH4_5g28250 FvH4_5g28250 FvH4_5g32590 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560
malus_domestica	MD08G1244100.v1.1 MD15G1403200.v1.1 MD15G1438400.v1.1
prunus_persica	Prupe.1G549300_v2.0.a1 Prupe.1G549300_v2.0.a1 Prupe.1G581500_v2.0.a1 Prupe.1G581500_v2.0.a1
pyrus_communis	pycom08g21180 pycom15g36060 pycom15g38640
rosa_chinensis	RchiOBHm_Chr7g0220411 RchiOBHm_Chr7g0229581 RchiOBHm_Chr7g0229711 RchiOBHm_Chr7g0230101 RchiOBHm_Chr7g0230191
rosa_laevigata	RLG00000001508 RLG00000001510
rosa_multiflora	Rmu_sc0000693.1_g000058 Rmu_sc0000851.1_g000010 Rmu_sc0001621.1_g000005 Rmu_sc0001918.1_g000014 Rmu_sc0002666.1_g000007 Rmu_sc0002822.1_g000020 Rmu_sc0002822.1_g000031 Rmu_sc0004110.1_g000004 Rmu_ssc0000189.1_g000051
rosa_roxburghii	Rroxscaffold_3G00230290 Rroxscaffold_3G00230310 Rroxscaffold_3G00239390
rosa_rugosa	Rorug07G0193900 Rorug07G0259200 Rorug07G0259700 Rorug07G0259900 Rorug07G0260000
rosa_samantha	Rh7AG334900 Rh7AG408700 Rh7AG409300 Rh7AG409800 Rh7BG325900 Rh7BG387800 Rh7BG388100 Rh7BG388200 Rh7BG388600 Rh7CG352600 Rh7CG427700
rosa_wichuraiana	Rw0G018580 Rw0G022570 Rw7G028550 Rw7G033930 Rw7G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	751
AciI	CCGC	2 cut(s)	236, 365
AclWI	GGATC	1 cut(s)	884
AcsI	RAATTY	2 cut(s)	96, 524
AcuI	CTGAAG	1 cut(s)	500
AfaI	GTAC	5 cut(s)	68, 428, 901, 934, 940
AfiI	CCNNNNNNNGG	3 cut(s)	88, 153, 352
AflIII	ACRYGT	2 cut(s)	423, 470
AgsI	TTSAA	6 cut(s)	86, 232, 319, 382, 403, 834
AjnI	CCWGG	1 cut(s)	429
AjuI	GAANNNNNNNTTGG	4 cut(s)	71, 103, 165, 197
AluBI	AGCT	3 cut(s)	160, 228, 620
AluI	AGCT	3 cut(s)	160, 228, 620
Alw21I	GWGCWC	1 cut(s)	391
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	884
AoxI	GGCC	1 cut(s)	696
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	2 cut(s)	96, 524
Asp700I	GAANNNNTTC	1 cut(s)	612
AspS9I	GGNCC	1 cut(s)	185
AsuC2I	CCSGG	1 cut(s)	486
AsuHPI	GGTGA	2 cut(s)	103, 607
AvaII	GGWCC	1 cut(s)	185
AxyI	CCTNAGG	1 cut(s)	651
BanI	GGYRCC	1 cut(s)	751
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	2 cut(s)	100, 306
BciT130I	CCWGG	1 cut(s)	431
BcnI	CCSGG	1 cut(s)	486
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	2 cut(s)	225, 795
BfmI	CTRYAG	1 cut(s)	660
BisI	GCNGC	2 cut(s)	60, 366
BlsI	GCNGC	2 cut(s)	61, 367
Bme1390I	CCNGG	2 cut(s)	431, 486
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	753
BmrFI	CCNGG	2 cut(s)	431, 486
BmsI	GCATC	2 cut(s)	286, 290
BpiI	GAAGAC	1 cut(s)	32
Bpu10I	CCTNAGC	1 cut(s)	738
BpuMI	CCSGG	1 cut(s)	486
BsaAI	YACGTR	2 cut(s)	53, 426
BsaJI	CCNNGG	1 cut(s)	762
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 153, 352
Bse1I	ACTGG	1 cut(s)	813
Bse21I	CCTNAGG	1 cut(s)	651
Bse3DI	GCAATG	2 cut(s)	207, 208
BseBI	CCWGG	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	762
BseGI	GGATG	3 cut(s)	117, 361, 817
BseLI	CCNNNNNNNGG	3 cut(s)	88, 153, 352
BseMI	GCAATG	2 cut(s)	207, 208
BseMII	CTCAG	1 cut(s)	752
BseNI	ACTGG	1 cut(s)	813
BseRI	GAGGAG	1 cut(s)	761
BseXI	GCAGC	1 cut(s)	46
BshFI	GGCC	1 cut(s)	698
BshNI	GGYRCC	1 cut(s)	751
BsiHKAI	GWGCWC	1 cut(s)	391
BsiSI	CCGG	1 cut(s)	485
BslI	CCNNNNNNNGG	3 cut(s)	88, 153, 352
BsmAI	GTCTC	1 cut(s)	9
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	1 cut(s)	698
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp143I	GATC	2 cut(s)	781, 889
BspACI	CCGC	2 cut(s)	236, 365
BspANI	GGCC	1 cut(s)	698
BspCNI	CTCAG	1 cut(s)	751
BspLI	GGNNCC	1 cut(s)	753
BspMAI	CTGCAG	1 cut(s)	664
BspPI	GGATC	1 cut(s)	884
BspT107I	GGYRCC	1 cut(s)	751
BsrDI	GCAATG	2 cut(s)	207, 208
BsrI	ACTGG	1 cut(s)	813
BssECI	CCNNGG	1 cut(s)	762
BssMI	GATC	2 cut(s)	781, 889
BssT1I	CCWWGG	1 cut(s)	762
Bst2UI	CCWGG	1 cut(s)	431
Bst4CI	ACNGT	3 cut(s)	71, 918, 957
Bst6I	CTCTTC	2 cut(s)	377, 738
BstAPI	GCANNNNNTGC	2 cut(s)	56, 395
BstBAI	YACGTR	2 cut(s)	53, 426
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	2 cut(s)	651, 738
BstF5I	GGATG	3 cut(s)	117, 361, 817
BstKTI	GATC	2 cut(s)	784, 892
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	781, 889
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 395, 646
BstNI	CCWGG	1 cut(s)	431
BstNSI	RCATGY	1 cut(s)	474
BstSCI	CCNGG	2 cut(s)	429, 484
BstSFI	CTRYAG	1 cut(s)	660
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	1 cut(s)	32
Bsu36I	CCTNAGG	1 cut(s)	651
BsuRI	GGCC	1 cut(s)	698
BtgZI	GCGATG	1 cut(s)	325
BtsCI	GGATG	3 cut(s)	117, 361, 817
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	185
CsiI	ACCWGGT	1 cut(s)	429
Csp6I	GTAC	5 cut(s)	67, 427, 900, 933, 939
CviAII	CATG	3 cut(s)	17, 471, 533
CviJI	RGCY	9 cut(s)	160, 228, 455, 484, 620, 640, 649, 698, 760
CviKI_1	RGCY	9 cut(s)	160, 228, 455, 484, 620, 640, 649, 698, 760
CviQI	GTAC	5 cut(s)	67, 427, 900, 933, 939
DdeI	CTNAG	2 cut(s)	651, 738
DpnI	GATC	2 cut(s)	783, 891
DpnII	GATC	2 cut(s)	781, 889
Eam1104I	CTCTTC	2 cut(s)	377, 738
EarI	CTCTTC	2 cut(s)	377, 738
Eco130I	CCWWGG	1 cut(s)	762
Eco32I	GATATC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	185
Eco57I	CTGAAG	1 cut(s)	500
Eco81I	CCTNAGG	1 cut(s)	651
EcoRII	CCWGG	1 cut(s)	429
EcoRV	GATATC	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	762
ErhI	CCWWGG	1 cut(s)	762
FaeI	CATG	3 cut(s)	20, 474, 536
FaiI	YATR	9 cut(s)	18, 219, 305, 329, 336, 467, 472, 534, 888
FalI	AAGNNNNNCTT	2 cut(s)	833, 865
FatI	CATG	3 cut(s)	16, 470, 532
Fnu4HI	GCNGC	2 cut(s)	60, 366
FokI	GGATG	3 cut(s)	124, 368, 824
Fsp4HI	GCNGC	2 cut(s)	60, 366
FspBI	CTAG	2 cut(s)	225, 795
GluI	GCNGC	2 cut(s)	60, 366
HaeIII	GGCC	1 cut(s)	698
HapII	CCGG	1 cut(s)	485
Hin1II	CATG	3 cut(s)	20, 474, 536
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	5 cut(s)	608, 656, 731, 772, 873
HpaII	CCGG	1 cut(s)	485
HphI	GGTGA	2 cut(s)	103, 607
Hpy166II	GTNNAC	2 cut(s)	79, 343
Hpy188I	TCNGA	4 cut(s)	480, 523, 684, 974
Hpy188III	TCNNGA	4 cut(s)	353, 740, 779, 893
Hpy8I	GTNNAC	2 cut(s)	79, 343
HpyAV	CCTTC	3 cut(s)	356, 651, 890
HpyCH4III	ACNGT	3 cut(s)	71, 918, 957
HpyCH4IV	ACGT	3 cut(s)	52, 425, 449
HpyCH4V	TGCA	6 cut(s)	16, 45, 212, 281, 579, 662
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 395, 646
HpyF3I	CTNAG	2 cut(s)	651, 738
HpySE526I	ACGT	3 cut(s)	52, 425, 449
Hsp92II	CATG	3 cut(s)	20, 474, 536
Kzo9I	GATC	2 cut(s)	781, 889
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	2 cut(s)	286, 290
MabI	ACCWGGT	1 cut(s)	429
MaeI	CTAG	2 cut(s)	225, 795
MaeII	ACGT	3 cut(s)	52, 425, 449
MaeIII	GTNAC	2 cut(s)	220, 966
MalI	GATC	2 cut(s)	783, 891
MboI	GATC	2 cut(s)	781, 889
MboII	GAAGA	6 cut(s)	37, 366, 394, 557, 740, 755
MhlI	GDGCHC	1 cut(s)	391
MluCI	AATT	7 cut(s)	86, 96, 130, 140, 369, 524, 571
MmeI	TCCRAC	1 cut(s)	444
MroXI	GAANNNNTTC	1 cut(s)	612
MseI	TTAA	3 cut(s)	503, 561, 867
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	1 cut(s)	485
MspR9I	CCNGG	2 cut(s)	431, 486
Mva1269I	GAATGC	1 cut(s)	439
MvaI	CCWGG	1 cut(s)	431
MwoI	GCNNNNNNNGC	3 cut(s)	56, 395, 646
NciI	CCSGG	1 cut(s)	486
NdeII	GATC	2 cut(s)	781, 889
NlaIII	CATG	3 cut(s)	20, 474, 536
NlaIV	GGNNCC	1 cut(s)	753
NmeAIII	GCCGAG	2 cut(s)	88, 724
NmuCI	GTSAC	1 cut(s)	966
NspI	RCATGY	1 cut(s)	474
PciI	ACATGT	1 cut(s)	470
PctI	GAATGC	1 cut(s)	439
PdmI	GAANNNNTTC	1 cut(s)	612
PfeI	GAWTC	5 cut(s)	608, 656, 731, 772, 873
PkrI	GCNGC	2 cut(s)	61, 367
Ppu21I	YACGTR	2 cut(s)	53, 426
PscI	ACATGT	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	429
PspN4I	GGNNCC	1 cut(s)	753
PspPI	GGNCC	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	664
PvuII	CAGCTG	1 cut(s)	620
RsaI	GTAC	5 cut(s)	68, 428, 901, 934, 940
RsaNI	GTAC	5 cut(s)	67, 427, 900, 933, 939
SaqAI	TTAA	3 cut(s)	503, 561, 867
SatI	GCNGC	2 cut(s)	60, 366
Sau3AI	GATC	2 cut(s)	781, 889
Sau96I	GGNCC	1 cut(s)	185
ScrFI	CCNGG	2 cut(s)	431, 486
SduI	GDGCHC	1 cut(s)	391
SexAI	ACCWGGT	1 cut(s)	429
SfaNI	GCATC	2 cut(s)	286, 290
SfcI	CTRYAG	1 cut(s)	660
SinI	GGWCC	1 cut(s)	185
Sse9I	AATT	7 cut(s)	86, 96, 130, 140, 369, 524, 571
SsiI	CCGC	2 cut(s)	236, 365
SspMI	CTAG	2 cut(s)	225, 795
StyD4I	CCNGG	2 cut(s)	429, 484
StyI	CCWWGG	1 cut(s)	762
TaaI	ACNGT	3 cut(s)	71, 918, 957
TaiI	ACGT	3 cut(s)	55, 428, 452
TasI	AATT	7 cut(s)	86, 96, 130, 140, 369, 524, 571
TatI	WGTACW	3 cut(s)	66, 932, 938
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	5 cut(s)	608, 656, 731, 772, 873
Tru1I	TTAA	3 cut(s)	503, 561, 867
Tru9I	TTAA	3 cut(s)	503, 561, 867
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	1 cut(s)	966
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	966
TspDTI	ATGAA	7 cut(s)	398, 650, 818, 828, 923, 950, 962
TspGWI	ACGGA	1 cut(s)	842
TspRI	CASTG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	2 cut(s)	96, 524
XceI	RCATGY	1 cut(s)	474
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	612
XspI	CTAG	2 cut(s)	225, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.