Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000851.1

Orthogroup ID

OG0000992

Physical Location & Seq

Genomic Coordinates Reverse (-)

30184 .. 32779

Gene Structure 2596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000851.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

atgttggtgaatgtgctgcacgctgggaacaccaataagaatggttacaaggcactcattgctgccgagttcagcggtgccaatgttgagctggtgaaggatttcgagatgggtgtgtcgaacaagagtccccagtctctcaaaatgaatcccattgggaaggttcctgtgttggaaacgccggacggtcctgtttttgagagcaatgccattgcgcgatatgttactcgtttgaaggcggataatcccctttatggttcttccttgattgaatatgcccttgtggagcaatggattgattttgcaacgttagagattgatgccaatattttgcgttggttcataccgcgtatcggttttgcagtctaccttcctccggctgaggaagctgcaatttcttccttgaagagagcactaactgctttgaacactcatcttgcttccaacacgtacttagttgggcactctgtgacattggctgatatcattatgatatgtaatttaacactgggttttaaccggttgttgacaaaaagttttacctcagaatttcctcatgttgagagatacttttggacattggctaatcagcctaattttcgcaagatactgggtgaggtgaaacaagctgaatctgttccagctgttcagtcaaagaagccttcacagcctaaggaacctgcaaagaaagaggccaagaaggaagtgaagaaagagccagcaaagcctaaagtagaagaggctgctcaggaagaggaggcacccaagcccaaggcaaagaatcctcttgatcttttgcctcctagcaagatgattctggatgaatggaaaaggctttattcaaacacaaagaccaacttccgtgaggttgctgtcaaaggcttctgggacatgtatgatccagagggttactccctttggttttgcaattacaagtacaacgatgaaaatacagtttcatttgtgactttgaacaaggtgggtggttttctgcagtggatggatttggcttgtaaatatgcgtttgggaagatgttggtgattgggtctgatcctcctttcaaggtgaaaggcttgtggctgttccgtgggcaagaggttccccagttcataattgatgaatgttatgacttggaactgtatgattggtgtaaggttgatataactgatgaggatcaaacggagcgcgtgaaccagatgattgaagatcacgagccttttgagggggaggctttgttggatgccaaatgcttcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

419

Amino Acids

47.56

Weight (kDa)

5.54

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09640 AT1G57720 AT1G57720
fragaria_vesca	FvH4_5g28250 FvH4_5g28250 FvH4_5g32590 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560
malus_domestica	MD08G1244100.v1.1 MD15G1403200.v1.1 MD15G1438400.v1.1
prunus_persica	Prupe.1G549300_v2.0.a1 Prupe.1G549300_v2.0.a1 Prupe.1G581500_v2.0.a1 Prupe.1G581500_v2.0.a1
pyrus_communis	pycom08g21180 pycom15g36060 pycom15g38640
rosa_chinensis	RchiOBHm_Chr7g0220411 RchiOBHm_Chr7g0229581 RchiOBHm_Chr7g0229711 RchiOBHm_Chr7g0230101 RchiOBHm_Chr7g0230191
rosa_laevigata	RLG00000001508 RLG00000001510
rosa_multiflora	Rmu_sc0000693.1_g000058 Rmu_sc0000851.1_g000010 Rmu_sc0001621.1_g000005 Rmu_sc0001918.1_g000014 Rmu_sc0002666.1_g000007 Rmu_sc0002822.1_g000020 Rmu_sc0002822.1_g000031 Rmu_sc0004110.1_g000004 Rmu_ssc0000189.1_g000051
rosa_roxburghii	Rroxscaffold_3G00230290 Rroxscaffold_3G00230310 Rroxscaffold_3G00239390
rosa_rugosa	Rorug07G0193900 Rorug07G0259200 Rorug07G0259700 Rorug07G0259900 Rorug07G0260000
rosa_samantha	Rh7AG334900 Rh7AG408700 Rh7AG409300 Rh7AG409800 Rh7BG325900 Rh7BG387800 Rh7BG388100 Rh7BG388200 Rh7BG388600 Rh7CG352600 Rh7CG427700
rosa_wichuraiana	Rw0G018580 Rw0G022570 Rw7G028550 Rw7G033930 Rw7G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	688
AccB1I	GGYRCC	2 cut(s)	77, 760
AccI	GTMKAC	1 cut(s)	366
AccII	CGCG	3 cut(s)	217, 349, 1188
AciI	CCGC	3 cut(s)	75, 239, 347
AclI	AACGTT	1 cut(s)	308
AclWI	GGATC	3 cut(s)	893, 1046, 1182
AcsI	RAATTY	1 cut(s)	548
AdeI	CACNNNGTG	1 cut(s)	469
AfaI	GTAC	2 cut(s)	452, 938
AfiI	CCNNNNNNNGG	4 cut(s)	254, 353, 376, 1223
AflIII	ACRYGT	2 cut(s)	447, 891
AgeI	ACCGGT	1 cut(s)	519
AgsI	TTSAA	9 cut(s)	235, 272, 406, 427, 843, 973, 1063, 1205, 1255
AluBI	AGCT	4 cut(s)	91, 389, 629, 644
AluI	AGCT	4 cut(s)	91, 389, 629, 644
Alw21I	GWGCWC	1 cut(s)	415
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	3 cut(s)	893, 1046, 1182
AoxI	GGCC	1 cut(s)	693
ApeKI	GCWGC	4 cut(s)	16, 62, 389, 743
ApoI	RAATTY	1 cut(s)	548
AsiGI	ACCGGT	1 cut(s)	519
Asp700I	GAANNNNTTC	2 cut(s)	101, 636
AspLEI	GCGC	2 cut(s)	217, 1188
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	6 cut(s)	19, 106, 626, 631, 1051, 1078
AvaII	GGWCC	1 cut(s)	188
AxyI	CCTNAGG	1 cut(s)	672
BaeGI	GKGCMC	1 cut(s)	465
BanI	GGYRCC	2 cut(s)	77, 760
BauI	CACGAG	1 cut(s)	1211
Bbv12I	GWGCWC	1 cut(s)	415
BbvCI	CCTCAGC	1 cut(s)	381
BbvI	GCAGC	4 cut(s)	3, 49, 376, 730
BccI	CCATC	2 cut(s)	103, 994
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	1 cut(s)	804
BfmI	CTRYAG	1 cut(s)	992
BfuAI	ACCTGC	1 cut(s)	688
BisI	GCNGC	4 cut(s)	17, 63, 390, 744
BlsI	GCNGC	4 cut(s)	18, 64, 391, 745
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	5 cut(s)	79, 165, 678, 762, 1101
BmrI	ACTGGG	4 cut(s)	127, 518, 620, 1099
BmsI	GCATC	2 cut(s)	310, 1231
BmuI	ACTGGG	4 cut(s)	127, 518, 620, 1099
BplI	GAGNNNNNCTC	2 cut(s)	896, 928
Bpu10I	CCTNAGC	2 cut(s)	381, 747
BsaAI	YACGTR	1 cut(s)	450
BsaBI	GATNNNNATC	1 cut(s)	1173
BsaJI	CCNNGG	2 cut(s)	771, 1087
BsaWI	WCCGGW	1 cut(s)	519
BsaXI	ACNNNNNCTCC	2 cut(s)	1220, 1250
Bsc4I	CCNNNNNNNGG	4 cut(s)	254, 353, 376, 1223
Bse118I	RCCGGY	1 cut(s)	519
Bse1I	ACTGG	4 cut(s)	133, 513, 615, 1105
Bse21I	CCTNAGG	1 cut(s)	672
Bse3DI	GCAATG	4 cut(s)	57, 210, 211, 296
Bse8I	GATNNNNATC	1 cut(s)	1173
BseDI	CCNNGG	2 cut(s)	771, 1087
BseGI	GGATG	3 cut(s)	826, 1005, 1246
BseJI	GATNNNNATC	1 cut(s)	1173
BseLI	CCNNNNNNNGG	4 cut(s)	254, 353, 376, 1223
BseMI	GCAATG	4 cut(s)	57, 210, 211, 296
BseMII	CTCAG	3 cut(s)	372, 558, 761
BseNI	ACTGG	4 cut(s)	133, 513, 615, 1105
BseRI	GAGGAG	1 cut(s)	770
BseSI	GKGCMC	1 cut(s)	465
BseXI	GCAGC	4 cut(s)	3, 49, 376, 730
BseYI	CCCAGC	1 cut(s)	23
Bsh1236I	CGCG	3 cut(s)	217, 349, 1188
BshFI	GGCC	1 cut(s)	695
BshNI	GGYRCC	2 cut(s)	77, 760
BshTI	ACCGGT	1 cut(s)	519
BsiHKAI	GWGCWC	1 cut(s)	415
BsiSI	CCGG	3 cut(s)	182, 377, 520
BslFI	GGGAC	2 cut(s)	114, 902
BslI	CCNNNNNNNGG	4 cut(s)	254, 353, 376, 1223
BsmAI	GTCTC	1 cut(s)	141
BsmFI	GGGAC	2 cut(s)	114, 902
BsnI	GGCC	1 cut(s)	695
Bsp1286I	GDGCHC	2 cut(s)	415, 465
Bsp143I	GATC	5 cut(s)	790, 898, 1051, 1174, 1207
BspACI	CCGC	3 cut(s)	75, 239, 347
BspANI	GGCC	1 cut(s)	695
BspCNI	CTCAG	3 cut(s)	373, 557, 760
BspFNI	CGCG	3 cut(s)	217, 349, 1188
BspLI	GGNNCC	5 cut(s)	79, 165, 678, 762, 1101
BspMAI	CTGCAG	1 cut(s)	996
BspMI	ACCTGC	1 cut(s)	688
BspPI	GGATC	3 cut(s)	893, 1046, 1182
BspT107I	GGYRCC	2 cut(s)	77, 760
BsrDI	GCAATG	4 cut(s)	57, 210, 211, 296
BsrFI	RCCGGY	1 cut(s)	519
BsrI	ACTGG	4 cut(s)	133, 513, 615, 1105
BssAI	RCCGGY	1 cut(s)	519
BssECI	CCNNGG	2 cut(s)	771, 1087
BssMI	GATC	5 cut(s)	790, 898, 1051, 1174, 1207
BssSI	CACGAG	1 cut(s)	1211
BssT1I	CCWWGG	1 cut(s)	771
Bst2BI	CACGAG	1 cut(s)	1211
Bst4CI	ACNGT	3 cut(s)	188, 955, 1140
Bst6I	CTCTTC	3 cut(s)	401, 732, 747
BstAPI	GCANNNNNTGC	2 cut(s)	59, 419
BstBAI	YACGTR	1 cut(s)	450
BstC8I	GCNNGC	2 cut(s)	21, 720
BstDEI	CTNAG	5 cut(s)	381, 454, 544, 672, 747
BstDSI	CCRYGG	1 cut(s)	1087
BstF5I	GGATG	3 cut(s)	826, 1005, 1246
BstFNI	CGCG	3 cut(s)	217, 349, 1188
BstHHI	GCGC	2 cut(s)	217, 1188
BstKTI	GATC	5 cut(s)	793, 901, 1054, 1177, 1210
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	5 cut(s)	790, 898, 1051, 1174, 1207
BstMWI	GCNNNNNNNGC	5 cut(s)	59, 386, 419, 667, 724
BstNSI	RCATGY	1 cut(s)	895
BstSFI	CTRYAG	1 cut(s)	992
BstSLI	GKGCMC	1 cut(s)	465
BstUI	CGCG	3 cut(s)	217, 349, 1188
BstV1I	GCAGC	4 cut(s)	3, 49, 376, 730
Bsu36I	CCTNAGG	1 cut(s)	672
BsuRI	GGCC	1 cut(s)	695
BtgI	CCRYGG	1 cut(s)	1087
BtsCI	GGATG	3 cut(s)	826, 1005, 1246
BtsI	GCAGTG	1 cut(s)	1001
BtsIMutI	CAGTG	2 cut(s)	506, 1001
BveI	ACCTGC	1 cut(s)	688
Cac8I	GCNNGC	2 cut(s)	21, 720
CfoI	GCGC	2 cut(s)	217, 1188
Cfr10I	RCCGGY	1 cut(s)	519
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	451, 937
CspAI	ACCGGT	1 cut(s)	519
CspCI	CAANNNNNGTGG	2 cut(s)	964, 999
CviAII	CATG	2 cut(s)	557, 892
CviQI	GTAC	2 cut(s)	451, 937
DdeI	CTNAG	5 cut(s)	381, 454, 544, 672, 747
DpnI	GATC	5 cut(s)	792, 900, 1053, 1176, 1209
DpnII	GATC	5 cut(s)	790, 898, 1051, 1174, 1207
DraIII	CACNNNGTG	1 cut(s)	469
Eam1104I	CTCTTC	3 cut(s)	401, 732, 747
EarI	CTCTTC	3 cut(s)	401, 732, 747
EciI	GGCGGA	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	771
Eco32I	GATATC	1 cut(s)	484
Eco47I	GGWCC	1 cut(s)	188
Eco81I	CCTNAGG	1 cut(s)	672
EcoRV	GATATC	1 cut(s)	484
EcoT14I	CCWWGG	1 cut(s)	771
ErhI	CCWWGG	1 cut(s)	771
FaeI	CATG	2 cut(s)	560, 895
FalI	AAGNNNNNCTT	2 cut(s)	842, 874
FaqI	GGGAC	2 cut(s)	114, 902
FatI	CATG	2 cut(s)	556, 891
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	4 cut(s)	17, 63, 390, 744
FokI	GGATG	3 cut(s)	833, 1012, 1253
Fsp4HI	GCNGC	4 cut(s)	17, 63, 390, 744
FspBI	CTAG	1 cut(s)	804
GlaI	GCGC	2 cut(s)	216, 1187
GluI	GCNGC	4 cut(s)	17, 63, 390, 744
GsaI	CCCAGC	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	695
HapII	CCGG	3 cut(s)	182, 377, 520
HhaI	GCGC	2 cut(s)	217, 1188
Hin1II	CATG	2 cut(s)	560, 895
Hin6I	GCGC	2 cut(s)	215, 1186
HinP1I	GCGC	2 cut(s)	215, 1186
HincII	GTYRAC	1 cut(s)	528
HindII	GTYRAC	1 cut(s)	528
HinfI	GANTC	5 cut(s)	127, 148, 632, 781, 814
HpaII	CCGG	3 cut(s)	182, 377, 520
HphI	GGTGA	6 cut(s)	19, 106, 626, 631, 1051, 1078
Hpy166II	GTNNAC	3 cut(s)	367, 528, 1192
Hpy188I	TCNGA	2 cut(s)	547, 1051
Hpy188III	TCNNGA	6 cut(s)	106, 749, 788, 818, 902, 1211
Hpy8I	GTNNAC	3 cut(s)	367, 528, 1192
HpyAV	CCTTC	6 cut(s)	91, 154, 229, 380, 672, 694
HpyCH4III	ACNGT	3 cut(s)	188, 955, 1140
HpyCH4IV	ACGT	2 cut(s)	308, 449
HpyCH4V	TGCA	7 cut(s)	19, 305, 362, 392, 683, 927, 994
HpyF10VI	GCNNNNNNNGC	5 cut(s)	59, 386, 419, 667, 724
HpyF3I	CTNAG	5 cut(s)	381, 454, 544, 672, 747
HpySE526I	ACGT	2 cut(s)	308, 449
Hsp92II	CATG	2 cut(s)	560, 895
HspAI	GCGC	2 cut(s)	215, 1186
Kzo9I	GATC	5 cut(s)	790, 898, 1051, 1174, 1207
LmnI	GCTCC	2 cut(s)	286, 1183
Lsp1109I	GCAGC	4 cut(s)	3, 49, 376, 730
LweI	GCATC	2 cut(s)	310, 1231
MaeI	CTAG	1 cut(s)	804
MaeII	ACGT	2 cut(s)	308, 449
MaeIII	GTNAC	5 cut(s)	44, 223, 469, 908, 964
MalI	GATC	5 cut(s)	792, 900, 1053, 1176, 1209
MboI	GATC	5 cut(s)	790, 898, 1051, 1174, 1207
MboII	GAAGA	8 cut(s)	252, 390, 418, 721, 749, 764, 1042, 1217
MhlI	GDGCHC	2 cut(s)	415, 465
MluCI	AATT	6 cut(s)	393, 499, 548, 595, 928, 1113
MlyI	GAGTC	1 cut(s)	136
MmeI	TCCRAC	3 cut(s)	153, 468, 1218
MroXI	GAANNNNTTC	2 cut(s)	101, 636
MseI	TTAA	2 cut(s)	503, 516
MspA1I	CMGCKG	2 cut(s)	75, 644
MspI	CCGG	3 cut(s)	182, 377, 520
MvnI	CGCG	3 cut(s)	217, 349, 1188
MwoI	GCNNNNNNNGC	5 cut(s)	59, 386, 419, 667, 724
NdeII	GATC	5 cut(s)	790, 898, 1051, 1174, 1207
NlaIII	CATG	2 cut(s)	560, 895
NlaIV	GGNNCC	5 cut(s)	79, 165, 678, 762, 1101
NmeAIII	GCCGAG	1 cut(s)	91
NmuCI	GTSAC	2 cut(s)	469, 964
NspI	RCATGY	1 cut(s)	895
PciI	ACATGT	1 cut(s)	891
PdmI	GAANNNNTTC	2 cut(s)	101, 636
PfeI	GAWTC	4 cut(s)	148, 632, 781, 814
PinAI	ACCGGT	1 cut(s)	519
PkrI	GCNGC	4 cut(s)	18, 64, 391, 745
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
Ppu21I	YACGTR	1 cut(s)	450
PscI	ACATGT	1 cut(s)	891
Psp1406I	AACGTT	1 cut(s)	308
PspFI	CCCAGC	1 cut(s)	23
PspN4I	GGNNCC	5 cut(s)	79, 165, 678, 762, 1101
PspPI	GGNCC	1 cut(s)	188
PstI	CTGCAG	1 cut(s)	996
PvuII	CAGCTG	1 cut(s)	644
RsaI	GTAC	2 cut(s)	452, 938
RsaNI	GTAC	2 cut(s)	451, 937
SaqAI	TTAA	2 cut(s)	503, 516
SatI	GCNGC	4 cut(s)	17, 63, 390, 744
Sau3AI	GATC	5 cut(s)	790, 898, 1051, 1174, 1207
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	1 cut(s)	136
SduI	GDGCHC	2 cut(s)	415, 465
SfaNI	GCATC	2 cut(s)	310, 1231
SfcI	CTRYAG	1 cut(s)	992
SinI	GGWCC	1 cut(s)	188
Sse9I	AATT	6 cut(s)	393, 499, 548, 595, 928, 1113
SsiI	CCGC	3 cut(s)	75, 239, 347
SspI	AATATT	1 cut(s)	328
SspMI	CTAG	1 cut(s)	804
StyI	CCWWGG	1 cut(s)	771
TaaI	ACNGT	3 cut(s)	188, 955, 1140
TaiI	ACGT	2 cut(s)	311, 452
TaqI	TCGA	2 cut(s)	105, 119
TasI	AATT	6 cut(s)	393, 499, 548, 595, 928, 1113
TatI	WGTACW	1 cut(s)	936
TfiI	GAWTC	4 cut(s)	148, 632, 781, 814
Tru1I	TTAA	2 cut(s)	503, 516
Tru9I	TTAA	2 cut(s)	503, 516
TscAI	CASTG	2 cut(s)	513, 1001
TseFI	GTSAC	2 cut(s)	469, 964
TseI	GCWGC	4 cut(s)	16, 62, 389, 743
Tsp45I	GTSAC	2 cut(s)	469, 964
TspDTI	ATGAA	7 cut(s)	161, 331, 837, 948, 960, 1099, 1134
TspGWI	ACGGA	3 cut(s)	851, 1076, 1196
TspRI	CASTG	2 cut(s)	513, 1001
VpaK11BI	GGWCC	1 cut(s)	188
XapI	RAATTY	1 cut(s)	548
XceI	RCATGY	1 cut(s)	895
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XmiI	GTMKAC	1 cut(s)	366
XmnI	GAANNNNTTC	2 cut(s)	101, 636
XspI	CTAG	1 cut(s)	804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.