RchiOBHm_Chr7g0220411

Elongation factor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
39312434 .. 39315818
3385 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19731

Sequence Viewer

Length: 1266 bp
ATGGCTCTGGTCCTGCATGCAGGGAGTACAAACAAAAATGCATACAAGACTCTCATTGCTGCAGAGTATACAGGTGTGAAAGTTGCACTTGCACCCAACTTTGAGATGGGCGTCTCGAACAAGACTCCTGAATTTCTCAAGATGAACCCGATTGGGAAGGTTCCGGTGCTGGAAACGCCTGATGGTCCCATCTTCGAGAGTAATGCCATTGCACGTTATGTTACTCGCTTGAAGGCTGACAATCCTCTTTATGGTTCATCTTCAATTGATTATGCCCATATCGAGCAATGGATTGATTTTGGATCCTTGGAGATTGATGCTAACATTGTTAATTGGTTTAGACCAAGAATGGGAAAGACTGTCTATCTTCCTCCAGCGGAGGAAGCTGCAATTGCTGCATTGAAGAGAGCACTGGGTGCATTGAACACACACCTTGCTTCCTGCACATACCTTGTTGGGGATTCTGTCACCCTTGCTGACATCATTATGACATGCAATTTGTTTATGGGCTTCACTAAGCTCATGACTAAGAGCTTCACTTCAGAGTTTCCTCATGTTGAGAGATACTTCTGGACCATGGTCAATCAACCAAACTTCAAAAAGGTATTGGGTGAGGTTAAGCAGACGGATTCTGTTCCTGCTGTTCAATCTGCAAAGAAGCCTGCCCAGGCCAAAGAATCTGCTAAACCCAAGGCTAAGGAGGAGCCAAAGAAAGAAGCCAAGAAGGAGCAGGCAAAGCCCAAAGCAGAAGCTGAGGAGGAAGAGGCACCAAAGCCAAAACCCAAGAATCCTCTTGATCTGCTTCCCCCGAGTAAGATGATATTGGATGACTGGAAAAGGCTTTACTCTAACACGAAGACCAACTTCCGTGAGGTGGCAATTAAAGGATTCTGGGACATGTACGATCCTGAGGGATATTCTCTTTGGTTCTGTGATTACAAGTACAATGATGAGAATACTGTTTCCTTCGTGACGCTGAACAAGGTCGGTGGATTTCTCCAGCGGATGGATCTGGCCCGCAAGTATGCTTTTGGGAAGATGCTAATTATTGGTGCAGACCCACCATACAAGGTGAAGGGCTTGTGGCTCTTCCGTGGCCCAGAAATCCCGGAATTTGTGATGAATGAGTGCTATGACATGGAGCTTTTTGAGTGGACCAAGGTCGACATCTCAGATGAAAACCAAAAGGAGCGTGTGAGTCAGATGATTGAAGACCAGGAGCCTTTTGAGGGAGAGCCTCTTTTGGATGCCAAATGCTTCAAGTGA

Protein Analysis

421

Amino Acids

47.71

Weight (kDa)

6.02

Isoelectric Point (pI)

37.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 8 - 75 4e-14 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 14 - 75 3.9e-08 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 16 - 80 8.9e-07 Glutathione S-transferase, N-terminal domain
GST_C PF00043 127 - 197 4.4e-12 Glutathione S-transferase, C-terminal domain
EF1G PF00647 260 - 367 2.9e-41 Elongation factor 1 gamma, conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 766
AccB7I CCANNNNNTGG 1 cut(s) 1006
AccI GTMKAC 2 cut(s) 68, 1164
AciI CCGC 3 cut(s) 377, 1003, 1018
AclWI GGATC 4 cut(s) 297, 310, 899, 1017
AcsI RAATTY 2 cut(s) 131, 1112
AcuI CTGAAG 1 cut(s) 525
AcyI GRCGYC 1 cut(s) 111
AdeI CACNNNGTG 1 cut(s) 416
AfaI GTAC 3 cut(s) 28, 902, 944
AfiI CCNNNNNNNGG 6 cut(s) 251, 350, 457, 874, 1006, 1229
AflIII ACRYGT 1 cut(s) 897
AgsI TTSAA 8 cut(s) 232, 264, 403, 424, 598, 647, 1211, 1261
AjnI CCWGG 2 cut(s) 666, 1215
AluBI AGCT 5 cut(s) 386, 520, 534, 752, 1144
AluI AGCT 5 cut(s) 386, 520, 534, 752, 1144
Alw21I GWGCWC 1 cut(s) 412
Alw26I GTCTC 1 cut(s) 118
AlwI GGATC 4 cut(s) 297, 310, 899, 1017
AlwNI CAGNNNCTG 1 cut(s) 752
Ama87I CYCGRG 1 cut(s) 808
AoxI GGCC 3 cut(s) 669, 1014, 1096
ApeKI GCWGC 3 cut(s) 59, 386, 395
ApoI RAATTY 2 cut(s) 131, 1112
ArsI GACNNNNNNTTYG 2 cut(s) 481, 513
AspS9I GGNCC 6 cut(s) 10, 185, 573, 1015, 1097, 1155
AsuC2I CCSGG 1 cut(s) 1109
AsuHPI GGTGA 3 cut(s) 460, 623, 1084
AvaI CYCGRG 1 cut(s) 808
AvaII GGWCC 4 cut(s) 10, 185, 573, 1155
AxyI CCTNAGG 1 cut(s) 909
BamHI GGATCC 1 cut(s) 302
BanI GGYRCC 1 cut(s) 766
BbsI GAAGAC 2 cut(s) 863, 1218
Bbv12I GWGCWC 1 cut(s) 412
BbvCI CCTCAGC 1 cut(s) 753
BbvI GCAGC 3 cut(s) 46, 373, 382
BccI CCATC 4 cut(s) 100, 176, 197, 1000
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BciT130I CCWGG 2 cut(s) 668, 1217
BcnI CCSGG 1 cut(s) 1109
BcoDI GTCTC 1 cut(s) 118
BfmI CTRYAG 1 cut(s) 60
BisI GCNGC 3 cut(s) 60, 387, 396
BlsI GCNGC 3 cut(s) 61, 388, 397
Bme1390I CCNGG 3 cut(s) 668, 1109, 1217
Bme18I GGWCC 4 cut(s) 10, 185, 573, 1155
BmeT110I CYCGRG 1 cut(s) 808
BmgT120I GGNCC 6 cut(s) 10, 185, 573, 1015, 1097, 1155
BmiI GGNNCC 6 cut(s) 162, 187, 304, 705, 768, 1221
BmrFI CCNGG 3 cut(s) 668, 1109, 1217
BmrI ACTGGG 1 cut(s) 422
BmsI GCATC 3 cut(s) 307, 1029, 1237
BmuI ACTGGG 1 cut(s) 422
BoxI GACNNNNGTC 2 cut(s) 578, 1160
BpiI GAAGAC 2 cut(s) 863, 1218
BpmI CTGGAG 2 cut(s) 357, 983
Bpu10I CCTNAGC 2 cut(s) 696, 753
BpuEI CTTGAG 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 1109
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 6 cut(s) 306, 576, 666, 690, 1093, 1158
BsaWI WCCGGW 1 cut(s) 163
Bsc4I CCNNNNNNNGG 6 cut(s) 251, 350, 457, 874, 1006, 1229
Bse1I ACTGG 2 cut(s) 417, 836
Bse21I CCTNAGG 1 cut(s) 909
Bse3DI GCAATG 3 cut(s) 54, 207, 293
BseBI CCWGG 2 cut(s) 668, 1217
BseDI CCNNGG 6 cut(s) 306, 576, 666, 690, 1093, 1158
BseGI GGATG 3 cut(s) 832, 1011, 1252
BseLI CCNNNNNNNGG 6 cut(s) 251, 350, 457, 874, 1006, 1229
BseMI GCAATG 3 cut(s) 54, 207, 293
BseMII CTCAG 3 cut(s) 744, 900, 1185
BseNI ACTGG 2 cut(s) 417, 836
BseRI GAGGAG 2 cut(s) 716, 770
BseXI GCAGC 3 cut(s) 46, 373, 382
BsgI GTGCAG 2 cut(s) 427, 1074
BshFI GGCC 3 cut(s) 671, 1016, 1098
BshNI GGYRCC 1 cut(s) 766
BsiHKAI GWGCWC 1 cut(s) 412
BsiHKCI CYCGRG 1 cut(s) 808
BsiSI CCGG 2 cut(s) 164, 1109
BslFI GGGAC 2 cut(s) 171, 908
BslI CCNNNNNNNGG 6 cut(s) 251, 350, 457, 874, 1006, 1229
BsmAI GTCTC 1 cut(s) 118
BsmBI CGTCTC 1 cut(s) 118
BsmFI GGGAC 2 cut(s) 171, 908
BsnI GGCC 3 cut(s) 671, 1016, 1098
BsoBI CYCGRG 1 cut(s) 808
Bsp1286I GDGCHC 1 cut(s) 412
Bsp143I GATC 4 cut(s) 302, 796, 904, 1009
Bsp19I CCATGG 1 cut(s) 576
BspACI CCGC 3 cut(s) 377, 1003, 1018
BspANI GGCC 3 cut(s) 671, 1016, 1098
BspCNI CTCAG 3 cut(s) 745, 901, 1184
BspHI TCATGA 1 cut(s) 522
BspLI GGNNCC 6 cut(s) 162, 187, 304, 705, 768, 1221
BspMAI CTGCAG 1 cut(s) 64
BspPI GGATC 4 cut(s) 297, 310, 899, 1017
BspQI GCTCTTC 1 cut(s) 1094
BspT107I GGYRCC 1 cut(s) 766
BsrDI GCAATG 3 cut(s) 54, 207, 293
BsrI ACTGG 2 cut(s) 417, 836
BssECI CCNNGG 6 cut(s) 306, 576, 666, 690, 1093, 1158
BssMI GATC 4 cut(s) 302, 796, 904, 1009
BssNAI GTATAC 1 cut(s) 69
BssNI GRCGYC 1 cut(s) 111
BssT1I CCWWGG 4 cut(s) 306, 576, 690, 1158
Bst1107I GTATAC 1 cut(s) 69
Bst2UI CCWGG 2 cut(s) 668, 1217
Bst4CI ACNGT 2 cut(s) 361, 961
Bst6I CTCTTC 3 cut(s) 398, 756, 1094
BstACI GRCGYC 1 cut(s) 111
BstAPI GCANNNNNTGC 2 cut(s) 395, 416
BstC8I GCNNGC 4 cut(s) 18, 663, 732, 1018
BstDEI CTNAG 6 cut(s) 516, 528, 696, 753, 909, 1171
BstDSI CCRYGG 2 cut(s) 576, 1093
BstF5I GGATG 3 cut(s) 832, 1011, 1252
BstKTI GATC 4 cut(s) 305, 799, 907, 1012
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 4 cut(s) 302, 796, 904, 1009
BstMWI GCNNNNNNNGC 6 cut(s) 175, 383, 392, 395, 416, 736
BstNI CCWGG 2 cut(s) 668, 1217
BstNSI RCATGY 3 cut(s) 20, 495, 901
BstPAI GACNNNNGTC 2 cut(s) 578, 1160
BstSCI CCNGG 3 cut(s) 666, 1107, 1215
BstSFI CTRYAG 1 cut(s) 60
BstV1I GCAGC 3 cut(s) 46, 373, 382
BstV2I GAAGAC 2 cut(s) 863, 1218
BstX2I RGATCY 2 cut(s) 302, 1009
BstYI RGATCY 2 cut(s) 302, 1009
BstZ17I GTATAC 1 cut(s) 69
Bsu36I CCTNAGG 1 cut(s) 909
BsuRI GGCC 3 cut(s) 671, 1016, 1098
BtgI CCRYGG 2 cut(s) 576, 1093
BtsCI GGATG 3 cut(s) 832, 1011, 1252
BtsIMutI CAGTG 1 cut(s) 410
Cac8I GCNNGC 4 cut(s) 18, 663, 732, 1018
CaiI CAGNNNCTG 1 cut(s) 752
CciI TCATGA 1 cut(s) 522
Cfr13I GGNCC 6 cut(s) 10, 185, 573, 1015, 1097, 1155
CseI GACGC 2 cut(s) 100, 982
Csp6I GTAC 3 cut(s) 27, 901, 943
CspCI CAANNNNNGTGG 2 cut(s) 970, 1005
CviAII CATG 7 cut(s) 17, 492, 523, 554, 577, 898, 1138
CviQI GTAC 3 cut(s) 27, 901, 943
DdeI CTNAG 6 cut(s) 516, 528, 696, 753, 909, 1171
DpnI GATC 4 cut(s) 304, 798, 906, 1011
DpnII GATC 4 cut(s) 302, 796, 904, 1009
DraIII CACNNNGTG 1 cut(s) 416
Eam1104I CTCTTC 3 cut(s) 398, 756, 1094
EarI CTCTTC 3 cut(s) 398, 756, 1094
Eco130I CCWWGG 4 cut(s) 306, 576, 690, 1158
Eco47I GGWCC 4 cut(s) 10, 185, 573, 1155
Eco57I CTGAAG 1 cut(s) 525
Eco81I CCTNAGG 1 cut(s) 909
Eco88I CYCGRG 1 cut(s) 808
EcoRII CCWGG 2 cut(s) 666, 1215
EcoT14I CCWWGG 4 cut(s) 306, 576, 690, 1158
EcoT22I ATGCAT 1 cut(s) 43
ErhI CCWWGG 4 cut(s) 306, 576, 690, 1158
Esp3I CGTCTC 1 cut(s) 118
FaeI CATG 7 cut(s) 20, 495, 526, 557, 580, 901, 1141
FalI AAGNNNNNCTT 4 cut(s) 72, 104, 848, 880
FaqI GGGAC 2 cut(s) 171, 908
FatI CATG 7 cut(s) 16, 491, 522, 553, 576, 897, 1137
FauI CCCGC 1 cut(s) 1025
FblI GTMKAC 2 cut(s) 68, 1164
Fnu4HI GCNGC 3 cut(s) 60, 387, 396
FokI GGATG 3 cut(s) 839, 1018, 1259
Fsp4HI GCNGC 3 cut(s) 60, 387, 396
GluI GCNGC 3 cut(s) 60, 387, 396
GsuI CTGGAG 2 cut(s) 357, 983
HaeIII GGCC 3 cut(s) 671, 1016, 1098
HapII CCGG 2 cut(s) 164, 1109
HgaI GACGC 2 cut(s) 100, 982
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 7 cut(s) 20, 495, 526, 557, 580, 901, 1141
HincII GTYRAC 1 cut(s) 1165
HindII GTYRAC 1 cut(s) 1165
HinfI GANTC 8 cut(s) 49, 124, 461, 629, 677, 787, 888, 1198
HpaII CCGG 2 cut(s) 164, 1109
HphI GGTGA 3 cut(s) 460, 623, 1084
Hpy166II GTNNAC 3 cut(s) 69, 1155, 1165
Hpy188I TCNGA 3 cut(s) 544, 1174, 1203
Hpy188III TCNNGA 9 cut(s) 115, 128, 139, 196, 523, 571, 794, 908, 970
Hpy8I GTNNAC 3 cut(s) 69, 1155, 1165
HpyAV CCTTC 5 cut(s) 151, 226, 718, 976, 1069
HpyCH4III ACNGT 2 cut(s) 361, 961
HpyCH4IV ACGT 1 cut(s) 214
HpyF10VI GCNNNNNNNGC 6 cut(s) 175, 383, 392, 395, 416, 736
HpyF3I CTNAG 6 cut(s) 516, 528, 696, 753, 909, 1171
HpySE526I ACGT 1 cut(s) 214
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 7 cut(s) 20, 495, 526, 557, 580, 901, 1141
Kzo9I GATC 4 cut(s) 302, 796, 904, 1009
LguI GCTCTTC 1 cut(s) 1094
LmnI GCTCC 5 cut(s) 703, 727, 1141, 1189, 1219
Lsp1109I GCAGC 3 cut(s) 46, 373, 382
LweI GCATC 3 cut(s) 307, 1029, 1237
MaeII ACGT 1 cut(s) 214
MaeIII GTNAC 3 cut(s) 220, 466, 970
MalI GATC 4 cut(s) 304, 798, 906, 1011
MboI GATC 4 cut(s) 302, 796, 904, 1009
MboII GAAGA 9 cut(s) 184, 252, 359, 415, 773, 868, 1048, 1081, 1223
MfeI CAATTG 2 cut(s) 264, 390
MflI RGATCY 2 cut(s) 302, 1009
MhlI GDGCHC 1 cut(s) 412
MluCI AATT 8 cut(s) 131, 264, 331, 390, 496, 879, 1044, 1112
MlyI GAGTC 3 cut(s) 43, 118, 1207
Mph1103I ATGCAT 1 cut(s) 43
MseI TTAA 3 cut(s) 330, 618, 882
MslI CAYNNNNRTG 1 cut(s) 485
MspA1I CMGCKG 2 cut(s) 377, 1003
MspI CCGG 2 cut(s) 164, 1109
MspR9I CCNGG 3 cut(s) 668, 1109, 1217
MunI CAATTG 2 cut(s) 264, 390
MvaI CCWGG 2 cut(s) 668, 1217
MwoI GCNNNNNNNGC 6 cut(s) 175, 383, 392, 395, 416, 736
NciI CCSGG 1 cut(s) 1109
NcoI CCATGG 1 cut(s) 576
NdeII GATC 4 cut(s) 302, 796, 904, 1009
NlaIII CATG 7 cut(s) 20, 495, 526, 557, 580, 901, 1141
NlaIV GGNNCC 6 cut(s) 162, 187, 304, 705, 768, 1221
NmuCI GTSAC 2 cut(s) 466, 970
NsiI ATGCAT 1 cut(s) 43
NspI RCATGY 3 cut(s) 20, 495, 901
PaeI GCATGC 1 cut(s) 20
PagI TCATGA 1 cut(s) 522
PciI ACATGT 1 cut(s) 897
PciSI GCTCTTC 1 cut(s) 1094
PfeI GAWTC 5 cut(s) 461, 629, 677, 787, 888
PflMI CCANNNNNTGG 1 cut(s) 1006
PfoI TCCNGGA 1 cut(s) 1107
PkrI GCNGC 3 cut(s) 61, 388, 397
PleI GAGTC 3 cut(s) 43, 118, 1206
PpsI GAGTC 3 cut(s) 43, 118, 1206
PscI ACATGT 1 cut(s) 897
PshAI GACNNNNGTC 2 cut(s) 578, 1160
Psp6I CCWGG 2 cut(s) 666, 1215
PspGI CCWGG 2 cut(s) 666, 1215
PspN4I GGNNCC 6 cut(s) 162, 187, 304, 705, 768, 1221
PspPI GGNCC 6 cut(s) 10, 185, 573, 1015, 1097, 1155
PstI CTGCAG 1 cut(s) 64
PstNI CAGNNNCTG 1 cut(s) 752
PsuI RGATCY 2 cut(s) 302, 1009
RsaI GTAC 3 cut(s) 28, 902, 944
RsaNI GTAC 3 cut(s) 27, 901, 943
RseI CAYNNNNRTG 1 cut(s) 485
SalI GTCGAC 1 cut(s) 1163
SapI GCTCTTC 1 cut(s) 1094
SaqAI TTAA 3 cut(s) 330, 618, 882
SatI GCNGC 3 cut(s) 60, 387, 396
Sau3AI GATC 4 cut(s) 302, 796, 904, 1009
Sau96I GGNCC 6 cut(s) 10, 185, 573, 1015, 1097, 1155
SchI GAGTC 3 cut(s) 43, 118, 1207
ScrFI CCNGG 3 cut(s) 668, 1109, 1217
SduI GDGCHC 1 cut(s) 412
SfaNI GCATC 3 cut(s) 307, 1029, 1237
SfcI CTRYAG 1 cut(s) 60
SinI GGWCC 4 cut(s) 10, 185, 573, 1155
SmiMI CAYNNNNRTG 1 cut(s) 485
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SphI GCATGC 1 cut(s) 20
Sse9I AATT 8 cut(s) 131, 264, 331, 390, 496, 879, 1044, 1112
SsiI CCGC 3 cut(s) 377, 1003, 1018
StyD4I CCNGG 3 cut(s) 666, 1107, 1215
StyI CCWWGG 4 cut(s) 306, 576, 690, 1158
TaaI ACNGT 2 cut(s) 361, 961
TaiI ACGT 1 cut(s) 217
TaqI TCGA 4 cut(s) 116, 195, 282, 1164
TasI AATT 8 cut(s) 131, 264, 331, 390, 496, 879, 1044, 1112
TatI WGTACW 2 cut(s) 26, 942
TfiI GAWTC 5 cut(s) 461, 629, 677, 787, 888
Tru1I TTAA 3 cut(s) 330, 618, 882
Tru9I TTAA 3 cut(s) 330, 618, 882
TscAI CASTG 1 cut(s) 417
TseFI GTSAC 2 cut(s) 466, 970
TseI GCWGC 3 cut(s) 59, 386, 395
Tsp45I GTSAC 2 cut(s) 466, 970
TspDTI ATGAA 4 cut(s) 158, 246, 1136, 1191
TspGWI ACGGA 3 cut(s) 641, 857, 1082
TspRI CASTG 1 cut(s) 417
Van91I CCANNNNNTGG 1 cut(s) 1006
VpaK11BI GGWCC 4 cut(s) 10, 185, 573, 1155
XapI RAATTY 2 cut(s) 131, 1112
XceI RCATGY 3 cut(s) 20, 495, 901
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XmiI GTMKAC 2 cut(s) 68, 1164
Zsp2I ATGCAT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.