AT1G57720

elongation factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
21377320 .. 21380382
3063 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G57720.1

Sequence Viewer

Length: 1242 bp
ATGGCGTTGGTCATGCACACATACAAGGGAAACAAAGGTGCCAATAAGGCACTTATTGCTGCAGAGTATGCGGGTGTGAAGATCGAGGAGTCCGCAGACTTTCAGATGGGCGTCACTAACAAGTCACCTGAGTTCCTTAAGATGAACCCTATTGGAAAGGTTCCTGTGCTTGAGACTCCTGAAGGTCCCATATTTGAGAGCAATGCCATTGCCCGATATGTGAGCCGTAAGAATGGTGACAACTCTTTGAATGGATCCTCCCTTATTGAATACGCTCACATTGAGCAATGGATCGATTTCTCCTCATTGGAGATTGATGCTAACATGTTGAAGTGGTTTGCTCCAAGAATGGGCTATGCTCCCTTCTCTGCCCCAGCTGAGGAAGCGGCAATTTCTGCATTGAAGAGAGGACTTGAGGCTCTGAACACACATCTCGCCTCCAACACTTTCCTTGTTGGACACTCTGTCACCCTTGCTGATATTGTCACAATCTGCAACTTGAACTTGGGATTTGCCACCGTGATGACCAAGAAATTTACCTCTGCATTCCCTCATGTTGAGAGATACTTCTGGACAATGGTTAACCAGCCAGAATTCAAGAAGGTGTTGGGTGATGCCAAACAAACCGAAGCTGTCCCTCCAGTTCCTACTAAGAAAGCTCCACAGCCTGCTAAGCCCAAGGAGGAGCCCAAGAAGGCAGCCCCTGTAGCAGAGGCACCAAAGCCTGCTGAGGAGGAGGAAGCACCAAAGCCTAAAGCCAAGAATCCTCTTGACTTGCTACCACCAAGCCCAATGGTTCTCGATGACTGGAAGAGGCTTTACTCGAACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAGGATTCTGGGACATGTATGACCCGGAGGGGTACTCACTATGGTTCTGTGACTATAAGTACAACGATGAGAACATGGTCTCCTTTGTTACACTCAACAAGGTAGGAGGGTTCCTTCAGCGTATGGACTTGGCACGTAAATACTCCTTTGGAAAGATGCTTATTTGCGGGTCAGAGGGTCCTTTCAAGGTGAAGGGTTTATGGCTTTTCCGTGGACCAGAGATCCCCAAGTTCATAATGGATGAGGTGTACGACATGGAGCTGTACGAGTGGACTAAGGTTGATATCTCCGATGAAGCACAGAAGGAGCGTGTTAGCCAGATGATTGAAGACGCTGAGCCATTTGAAGGCGAGGCTCTTTTGGACGCCAAATGCTTTAAGTGA

Protein Analysis

413

Amino Acids

46.4

Weight (kDa)

5.55

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 7 - 76 1.3e-14 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 14 - 75 6.8e-08 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 14 - 80 1.5e-07 Glutathione S-transferase, N-terminal domain
GST_C PF00043 116 - 197 9e-12 Glutathione S-transferase, C-terminal domain
GST_C_2 PF13410 127 - 190 8.8e-06 Glutathione S-transferase, C-terminal domain
EF1G PF00647 252 - 359 6.4e-40 Elongation factor 1 gamma, conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 38, 715
AciI CCGC 4 cut(s) 71, 93, 386, 1026
AclWI GGATC 4 cut(s) 249, 262, 299, 1075
AcsI RAATTY 2 cut(s) 533, 593
AcuI CTGAAG 2 cut(s) 201, 959
AcyI GRCGYC 2 cut(s) 111, 1224
AfaI GTAC 4 cut(s) 893, 920, 1109, 1124
AfiI CCNNNNNNNGG 3 cut(s) 350, 379, 1205
AflII CTTAAG 1 cut(s) 137
AflIII ACRYGT 2 cut(s) 324, 873
AgsI TTSAA 9 cut(s) 250, 269, 331, 403, 502, 598, 1045, 1187, 1205
AhdI GACNNNNNGTC 1 cut(s) 464
AjuI GAANNNNNNNTTGG 2 cut(s) 824, 856
AloI GAACNNNNNNTCC 4 cut(s) 818, 850, 923, 955
AluBI AGCT 4 cut(s) 377, 632, 659, 1120
AluI AGCT 4 cut(s) 377, 632, 659, 1120
Alw26I GTCTC 2 cut(s) 167, 943
AlwI GGATC 4 cut(s) 249, 262, 299, 1075
AlwNI CAGNNNCTG 1 cut(s) 704
ApeKI GCWGC 2 cut(s) 59, 698
ApoI RAATTY 2 cut(s) 533, 593
AspS9I GGNCC 3 cut(s) 185, 1037, 1073
AsuC2I CCSGG 1 cut(s) 884
AsuHPI GGTGA 5 cut(s) 117, 248, 460, 623, 1060
AvaII GGWCC 3 cut(s) 185, 1037, 1073
BamHI GGATCC 1 cut(s) 254
BanI GGYRCC 2 cut(s) 38, 715
BanII GRGCYC 1 cut(s) 690
BarI GAAGNNNNNNTAC 2 cut(s) 803, 835
BbsI GAAGAC 1 cut(s) 1194
BbvCI CCTCAGC 2 cut(s) 378, 729
BbvI GCAGC 2 cut(s) 46, 710
BccI CCATC 1 cut(s) 100
BceAI ACGGC 1 cut(s) 210
BcnI CCSGG 1 cut(s) 884
BcoDI GTCTC 2 cut(s) 167, 943
BfmI CTRYAG 2 cut(s) 60, 705
BfrI CTTAAG 1 cut(s) 137
BglI GCCNNNNNGGC 1 cut(s) 47
BisI GCNGC 3 cut(s) 60, 387, 699
BlpI GCTNAGC 2 cut(s) 672, 1194
BlsI GCNGC 3 cut(s) 61, 388, 700
Bme1390I CCNGG 1 cut(s) 884
Bme18I GGWCC 3 cut(s) 185, 1037, 1073
BmeRI GACNNNNNGTC 1 cut(s) 464
BmgT120I GGNCC 3 cut(s) 185, 1037, 1073
BmiI GGNNCC 8 cut(s) 40, 162, 187, 256, 687, 717, 971, 1038
BmrFI CCNGG 1 cut(s) 884
BmsI GCATC 3 cut(s) 307, 604, 1005
BpiI GAAGAC 1 cut(s) 1194
BplI GAGNNNNNCTC 2 cut(s) 878, 910
BpmI CTGGAG 1 cut(s) 624
Bpu10I CCTNAGC 2 cut(s) 378, 729
Bpu1102I GCTNAGC 2 cut(s) 672, 1194
BpuEI CTTGAG 2 cut(s) 191, 434
BpuMI CCSGG 1 cut(s) 884
Bsa29I ATCGAT 1 cut(s) 294
BsaAI YACGTR 1 cut(s) 995
BsaHI GRCGYC 2 cut(s) 111, 1224
BsaI GGTCTC 1 cut(s) 943
BsaJI CCNNGG 2 cut(s) 678, 1069
BsaXI ACNNNNNCTCC 2 cut(s) 923, 953
Bsc4I CCNNNNNNNGG 3 cut(s) 350, 379, 1205
Bse1I ACTGG 2 cut(s) 641, 812
Bse3DI GCAATG 3 cut(s) 207, 208, 293
BseCI ATCGAT 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 678, 1069
BseGI GGATG 1 cut(s) 1105
BseLI CCNNNNNNNGG 3 cut(s) 350, 379, 1205
BseMI GCAATG 3 cut(s) 207, 208, 293
BseMII CTCAG 4 cut(s) 120, 369, 720, 1185
BseNI ACTGG 2 cut(s) 641, 812
BseRI GAGGAG 5 cut(s) 101, 292, 698, 746, 749
BseXI GCAGC 2 cut(s) 46, 710
BseYI CCCAGC 1 cut(s) 373
BshNI GGYRCC 2 cut(s) 38, 715
BshVI ATCGAT 1 cut(s) 294
BsiSI CCGG 1 cut(s) 884
BslFI GGGAC 3 cut(s) 171, 620, 884
BslI CCNNNNNNNGG 3 cut(s) 350, 379, 1205
BsmAI GTCTC 2 cut(s) 167, 943
BsmFI GGGAC 3 cut(s) 171, 620, 884
BsmI GAATGC 1 cut(s) 545
Bso31I GGTCTC 1 cut(s) 943
Bsp1286I GDGCHC 1 cut(s) 690
Bsp143I GATC 4 cut(s) 81, 254, 291, 1080
Bsp1720I GCTNAGC 2 cut(s) 672, 1194
BspACI CCGC 4 cut(s) 71, 93, 386, 1026
BspCNI CTCAG 4 cut(s) 121, 370, 721, 1186
BspDI ATCGAT 1 cut(s) 294
BspLI GGNNCC 8 cut(s) 40, 162, 187, 256, 687, 717, 971, 1038
BspMAI CTGCAG 1 cut(s) 64
BspPI GGATC 4 cut(s) 249, 262, 299, 1075
BspT107I GGYRCC 2 cut(s) 38, 715
BspTI CTTAAG 1 cut(s) 137
BspTNI GGTCTC 1 cut(s) 943
BsrDI GCAATG 3 cut(s) 207, 208, 293
BsrI ACTGG 2 cut(s) 641, 812
BssECI CCNNGG 2 cut(s) 678, 1069
BssMI GATC 4 cut(s) 81, 254, 291, 1080
BssNI GRCGYC 2 cut(s) 111, 1224
BssT1I CCWWGG 1 cut(s) 678
Bst4CI ACNGT 1 cut(s) 520
Bst6I CTCTTC 2 cut(s) 398, 806
BstACI GRCGYC 2 cut(s) 111, 1224
BstAFI CTTAAG 1 cut(s) 137
BstAPI GCANNNNNTGC 3 cut(s) 56, 68, 395
BstBAI YACGTR 1 cut(s) 995
BstC8I GCNNGC 2 cut(s) 669, 726
BstDEI CTNAG 7 cut(s) 129, 378, 651, 672, 729, 1134, 1194
BstDSI CCRYGG 1 cut(s) 1069
BstF5I GGATG 1 cut(s) 1105
BstKTI GATC 4 cut(s) 84, 257, 294, 1083
BstMAI GTCTC 2 cut(s) 167, 943
BstMBI GATC 4 cut(s) 81, 254, 291, 1080
BstMWI GCNNNNNNNGC 7 cut(s) 47, 56, 68, 383, 395, 673, 707
BstNSI RCATGY 2 cut(s) 328, 877
BstSCI CCNGG 1 cut(s) 882
BstSFI CTRYAG 2 cut(s) 60, 705
BstV1I GCAGC 2 cut(s) 46, 710
BstV2I GAAGAC 1 cut(s) 1194
BstX2I RGATCY 2 cut(s) 254, 1080
BstYI RGATCY 2 cut(s) 254, 1080
Bsu15I ATCGAT 1 cut(s) 294
BsuTUI ATCGAT 1 cut(s) 294
BtgI CCRYGG 1 cut(s) 1069
BtsCI GGATG 1 cut(s) 1105
Cac8I GCNNGC 2 cut(s) 669, 726
CaiI CAGNNNCTG 1 cut(s) 704
Cfr13I GGNCC 3 cut(s) 185, 1037, 1073
ClaI ATCGAT 1 cut(s) 294
CseI GACGC 3 cut(s) 100, 1199, 1232
Csp6I GTAC 4 cut(s) 892, 919, 1108, 1123
CviAII CATG 6 cut(s) 13, 325, 554, 874, 934, 1114
CviQI GTAC 4 cut(s) 892, 919, 1108, 1123
DdeI CTNAG 7 cut(s) 129, 378, 651, 672, 729, 1134, 1194
DpnI GATC 4 cut(s) 83, 256, 293, 1082
DpnII GATC 4 cut(s) 81, 254, 291, 1080
DriI GACNNNNNGTC 1 cut(s) 464
Eam1104I CTCTTC 2 cut(s) 398, 806
Eam1105I GACNNNNNGTC 1 cut(s) 464
EarI CTCTTC 2 cut(s) 398, 806
Eco130I CCWWGG 1 cut(s) 678
Eco24I GRGCYC 1 cut(s) 690
Eco31I GGTCTC 1 cut(s) 943
Eco32I GATATC 1 cut(s) 1144
Eco47I GGWCC 3 cut(s) 185, 1037, 1073
Eco57I CTGAAG 2 cut(s) 201, 959
EcoO109I RGGNCCY 2 cut(s) 185, 1037
EcoRI GAATTC 1 cut(s) 593
EcoRV GATATC 1 cut(s) 1144
EcoT14I CCWWGG 1 cut(s) 678
EcoT38I GRGCYC 1 cut(s) 690
ErhI CCWWGG 1 cut(s) 678
FaeI CATG 6 cut(s) 16, 328, 557, 877, 937, 1117
FaqI GGGAC 3 cut(s) 171, 620, 884
FatI CATG 6 cut(s) 12, 324, 553, 873, 933, 1113
FauI CCCGC 2 cut(s) 64, 1019
Fnu4HI GCNGC 3 cut(s) 60, 387, 699
FokI GGATG 1 cut(s) 1112
FriOI GRGCYC 1 cut(s) 690
Fsp4HI GCNGC 3 cut(s) 60, 387, 699
GluI GCNGC 3 cut(s) 60, 387, 699
GsaI CCCAGC 1 cut(s) 377
GsuI CTGGAG 1 cut(s) 624
HapII CCGG 1 cut(s) 884
HgaI GACGC 3 cut(s) 100, 1199, 1232
Hin1I GRCGYC 2 cut(s) 111, 1224
Hin1II CATG 6 cut(s) 16, 328, 557, 877, 937, 1117
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HinfI GANTC 4 cut(s) 89, 175, 763, 864
HpaI GTTAAC 1 cut(s) 583
HpaII CCGG 1 cut(s) 884
HphI GGTGA 5 cut(s) 117, 248, 460, 623, 1060
Hpy166II GTNNAC 4 cut(s) 583, 1073, 1108, 1131
Hpy188I TCNGA 4 cut(s) 105, 423, 1033, 1150
Hpy188III TCNNGA 5 cut(s) 179, 571, 598, 770, 800
Hpy8I GTNNAC 4 cut(s) 583, 1073, 1108, 1131
HpyAV CCTTC 8 cut(s) 176, 373, 595, 688, 983, 1045, 1156, 1199
HpyCH4III ACNGT 1 cut(s) 520
HpyCH4IV ACGT 1 cut(s) 994
HpyCH4V TGCA 5 cut(s) 16, 62, 398, 495, 545
HpyF10VI GCNNNNNNNGC 7 cut(s) 47, 56, 68, 383, 395, 673, 707
HpyF3I CTNAG 7 cut(s) 129, 378, 651, 672, 729, 1134, 1194
HpySE526I ACGT 1 cut(s) 994
Hsp92I GRCGYC 2 cut(s) 111, 1224
Hsp92II CATG 6 cut(s) 16, 328, 557, 877, 937, 1117
KspAI GTTAAC 1 cut(s) 583
Kzo9I GATC 4 cut(s) 81, 254, 291, 1080
LmnI GCTCC 6 cut(s) 346, 364, 664, 685, 1117, 1165
Lsp1109I GCAGC 2 cut(s) 46, 710
LweI GCATC 3 cut(s) 307, 604, 1005
MaeII ACGT 1 cut(s) 994
MaeIII GTNAC 7 cut(s) 112, 123, 236, 466, 484, 908, 946
MalI GATC 4 cut(s) 83, 256, 293, 1082
MboI GATC 4 cut(s) 81, 254, 291, 1080
MboII GAAGA 4 cut(s) 91, 415, 823, 1199
MflI RGATCY 2 cut(s) 254, 1080
MhlI GDGCHC 1 cut(s) 690
MluCI AATT 3 cut(s) 390, 533, 593
MlyI GAGTC 2 cut(s) 98, 169
MmeI TCCRAC 3 cut(s) 436, 465, 861
MseI TTAA 3 cut(s) 138, 582, 1236
MslI CAYNNNNRTG 1 cut(s) 521
MspA1I CMGCKG 1 cut(s) 377
MspCI CTTAAG 1 cut(s) 137
MspI CCGG 1 cut(s) 884
MspR9I CCNGG 1 cut(s) 884
Mva1269I GAATGC 1 cut(s) 545
MwoI GCNNNNNNNGC 7 cut(s) 47, 56, 68, 383, 395, 673, 707
NciI CCSGG 1 cut(s) 884
NdeII GATC 4 cut(s) 81, 254, 291, 1080
NlaIII CATG 6 cut(s) 16, 328, 557, 877, 937, 1117
NlaIV GGNNCC 8 cut(s) 40, 162, 187, 256, 687, 717, 971, 1038
NmuCI GTSAC 6 cut(s) 112, 123, 236, 466, 484, 908
NspI RCATGY 2 cut(s) 328, 877
PciI ACATGT 2 cut(s) 324, 873
PctI GAATGC 1 cut(s) 545
PfeI GAWTC 2 cut(s) 763, 864
PkrI GCNGC 3 cut(s) 61, 388, 700
PleI GAGTC 2 cut(s) 97, 169
PpsI GAGTC 2 cut(s) 97, 169
Ppu21I YACGTR 1 cut(s) 995
PpuMI RGGWCCY 2 cut(s) 185, 1037
PscI ACATGT 2 cut(s) 324, 873
Psp5II RGGWCCY 2 cut(s) 185, 1037
PspFI CCCAGC 1 cut(s) 373
PspN4I GGNNCC 8 cut(s) 40, 162, 187, 256, 687, 717, 971, 1038
PspPI GGNCC 3 cut(s) 185, 1037, 1073
PspPPI RGGWCCY 2 cut(s) 185, 1037
PstI CTGCAG 1 cut(s) 64
PstNI CAGNNNCTG 1 cut(s) 704
PsuI RGATCY 2 cut(s) 254, 1080
PvuII CAGCTG 1 cut(s) 377
RsaI GTAC 4 cut(s) 893, 920, 1109, 1124
RsaNI GTAC 4 cut(s) 892, 919, 1108, 1123
RseI CAYNNNNRTG 1 cut(s) 521
SaqAI TTAA 3 cut(s) 138, 582, 1236
SatI GCNGC 3 cut(s) 60, 387, 699
Sau3AI GATC 4 cut(s) 81, 254, 291, 1080
Sau96I GGNCC 3 cut(s) 185, 1037, 1073
SchI GAGTC 2 cut(s) 98, 169
ScrFI CCNGG 1 cut(s) 884
SduI GDGCHC 1 cut(s) 690
SfaNI GCATC 3 cut(s) 307, 604, 1005
SfcI CTRYAG 2 cut(s) 60, 705
SinI GGWCC 3 cut(s) 185, 1037, 1073
SmiMI CAYNNNNRTG 1 cut(s) 521
SmlI CTYRAG 3 cut(s) 137, 170, 413
SmoI CTYRAG 3 cut(s) 137, 170, 413
Sse9I AATT 3 cut(s) 390, 533, 593
SsiI CCGC 4 cut(s) 71, 93, 386, 1026
StyD4I CCNGG 1 cut(s) 882
StyI CCWWGG 1 cut(s) 678
TaaI ACNGT 1 cut(s) 520
TaiI ACGT 1 cut(s) 997
TaqI TCGA 4 cut(s) 84, 294, 801, 824
TasI AATT 3 cut(s) 390, 533, 593
TatI WGTACW 1 cut(s) 918
TauI GCSGC 1 cut(s) 389
TfiI GAWTC 2 cut(s) 763, 864
Tru1I TTAA 3 cut(s) 138, 582, 1236
Tru9I TTAA 3 cut(s) 138, 582, 1236
TseFI GTSAC 6 cut(s) 112, 123, 236, 466, 484, 908
TseI GCWGC 2 cut(s) 59, 698
Tsp45I GTSAC 6 cut(s) 112, 123, 236, 466, 484, 908
TspDTI ATGAA 3 cut(s) 158, 1081, 1167
TspGWI ACGGA 2 cut(s) 833, 1058
Vha464I CTTAAG 1 cut(s) 137
VpaK11BI GGWCC 3 cut(s) 185, 1037, 1073
XapI RAATTY 2 cut(s) 533, 593
XceI RCATGY 2 cut(s) 328, 877
XcmI CCANNNNNNNNNTGG 1 cut(s) 1093
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.