MD15G1438400.v1.1

Elongation factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
53802878 .. 53806470
3593 bp
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UTR
Exon/CDS
Intron
MD15G1438400.v1.1.491

Sequence Viewer

Length: 1263 bp
ATGGCTCTGGTTTTGCATGCAGGGAAGACAAACAAAAATGGTTACAAGGCACTCATTACTGCAGAGTATACTGGTGTGAAAGTTGAACTTGCACCTAACTTTGACATGGGTGTCTCAAACAAAACTCCTGAATATTTGAAGTTAAACCCTATTGGGAAGGTTCCGCTGTTGGTAACACCGGATGGTCCCATTTTTGAGAGTAACGCTATTGCTCGCTATGTTGCACGCTTGAAAGCTGATAATCCTCTGTATGGTTGTTCTCTGATTGATTATGCCCATATCGAGCAATGGATTGATTTTGGATCCATGGAGATTGATGCTAACATAAGCAAGTGGTACTATCCAAGACTGGGATATGGCGTGTATCTTCCTCCAGCTGAGGAAGCTGCGATTTCTGCATTGAAGAGAGCACTAGGTGCCTTGAACACCCATATTGCTTCAAACACATACCTAGTTGGGCATTCTGTAACCCTTGCTGACATTGTTGTCGTATGCAATTTGTACGTGGGGTTCGCCAACGTCATGACTAAGAGCTTCACTTCAGAGTTTCCGCATGTTGAGAGATACTTCTGGACCCTGGTCAATCAACCAAACTTCAAAAAGGTACTGGGTGATGTTGAGCAGGCTGTTTCAGTTCCACCAGTTGCATCTGCAAAGAAGCCTGCCCAGCCTGCTAAGGGCAAGATCAAGGAGGAGCCCAAGAAAGAAGCCAAAAAGGAGCCGGCAAAACCCAAAGCAGAAGCTGCTGAGGAAGTGGAAGAGGCTCCAAAGCCAAAACCCAAGAATCCTCTTGATCTGCTTCCCCCAAGTAAGATGGTTTTGGATGACTGGAAGAGACTGTACTCTAACACAAAGAGCAACTTCCGTGAGGTTGCTATTAAAGGATTCTGGGACATGTACGACCCTGAAGGATACTCTCTTTGGTTCTGTGAGTACAAGTACAATGATGAGAATACAGTTTCCTTCGTGACACTGAACAAGGTCGGTGGATTCCTTCAGCGGATGGATCTGGCCCGCAAGTATGCCTTTGGGAAGATGCTTGTGATTGGCTCAGAGGCACCATTCAAGGTGAAGGGGCTGTGGCTCTTCCGTGGGCAAGAAATTCCCAAATTCGTGATGTATGAGTGCTACGATATGGAGCTCTACAGCTGGACAAAGGTTGACATTTCAGATGAAAACCAAAAGGAGCGTGTCAACCAGATGATCGAAGACCAGGAGCCGTTCGAGGGAGAGGCTCTTTTGGACGCCAAGTGCTTCAAGTGA

Protein Analysis

421

Amino Acids

47.45

Weight (kDa)

6.58

Isoelectric Point (pI)

31.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 11 - 76 1.1e-13 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 16 - 76 2.2e-08 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 16 - 81 5.1e-07 Glutathione S-transferase, N-terminal domain
GST_C_2 PF13410 126 - 190 9.5e-06 Glutathione S-transferase, C-terminal domain
GST_C PF00043 128 - 197 2.1e-10 Glutathione S-transferase, C-terminal domain
EF1G PF00647 259 - 367 2.8e-42 Elongation factor 1 gamma, conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 110, 485
AccB1I GGYRCC 2 cut(s) 416, 1057
AccI GTMKAC 1 cut(s) 68
AciI CCGC 4 cut(s) 164, 551, 1000, 1015
AclWI GGATC 3 cut(s) 297, 310, 1014
AcsI RAATTY 2 cut(s) 1101, 1109
AcuI CTGAAG 3 cut(s) 525, 927, 980
AcyI GRCGYC 1 cut(s) 1245
AdeI CACNNNGTG 1 cut(s) 416
AfaI GTAC 7 cut(s) 338, 503, 606, 842, 899, 935, 941
AfiI CCNNNNNNNGG 4 cut(s) 251, 350, 677, 1226
AflIII ACRYGT 1 cut(s) 894
AgsI TTSAA 9 cut(s) 86, 139, 232, 403, 424, 441, 598, 1066, 1258
AjnI CCWGG 2 cut(s) 576, 1212
AluBI AGCT 7 cut(s) 236, 377, 386, 534, 743, 1141, 1149
AluI AGCT 7 cut(s) 236, 377, 386, 534, 743, 1141, 1149
Alw21I GWGCWC 2 cut(s) 412, 1143
Alw26I GTCTC 2 cut(s) 118, 829
AlwI GGATC 3 cut(s) 297, 310, 1014
AlwNI CAGNNNCTG 1 cut(s) 743
AoxI GGCC 1 cut(s) 1011
ApeKI GCWGC 2 cut(s) 386, 743
ApoI RAATTY 2 cut(s) 1101, 1109
AspS9I GGNCC 3 cut(s) 185, 573, 1012
AsuHPI GGTGA 2 cut(s) 623, 1081
AvaII GGWCC 2 cut(s) 185, 573
BamHI GGATCC 1 cut(s) 302
BanI GGYRCC 2 cut(s) 416, 1057
BanII GRGCYC 2 cut(s) 699, 1143
BarI GAAGNNNNNNTAC 2 cut(s) 824, 856
BbsI GAAGAC 2 cut(s) 32, 1215
Bbv12I GWGCWC 2 cut(s) 412, 1143
BbvCI CCTCAGC 2 cut(s) 378, 747
BbvI GCAGC 2 cut(s) 373, 730
BccI CCATC 3 cut(s) 176, 808, 997
BceAI ACGGC 1 cut(s) 1204
BciT130I CCWGG 2 cut(s) 578, 1214
BciVI GTATCC 1 cut(s) 905
BcoDI GTCTC 2 cut(s) 118, 829
BfaI CTAG 2 cut(s) 413, 452
BfmI CTRYAG 2 cut(s) 60, 1144
BfuI GTATCC 1 cut(s) 905
BisI GCNGC 2 cut(s) 387, 744
BlsI GCNGC 2 cut(s) 388, 745
Bme1390I CCNGG 2 cut(s) 578, 1214
Bme18I GGWCC 2 cut(s) 185, 573
BmgT120I GGNCC 3 cut(s) 185, 573, 1012
BmrFI CCNGG 2 cut(s) 578, 1214
BmrI ACTGGG 2 cut(s) 359, 617
BmsI GCATC 3 cut(s) 307, 656, 1026
BmuI ACTGGG 2 cut(s) 359, 617
BoxI GACNNNNGTC 1 cut(s) 578
BpiI GAAGAC 2 cut(s) 32, 1215
BpmI CTGGAG 1 cut(s) 357
Bpu10I CCTNAGC 3 cut(s) 378, 675, 747
BsaAI YACGTR 1 cut(s) 505
BsaHI GRCGYC 1 cut(s) 1245
BsaJI CCNNGG 3 cut(s) 306, 576, 1090
BsaWI WCCGGW 1 cut(s) 178
Bsc4I CCNNNNNNNGG 4 cut(s) 251, 350, 677, 1226
Bse118I RCCGGY 1 cut(s) 721
Bse1I ACTGG 5 cut(s) 76, 354, 612, 641, 833
Bse3DI GCAATG 1 cut(s) 293
BseBI CCWGG 2 cut(s) 578, 1214
BseDI CCNNGG 3 cut(s) 306, 576, 1090
BseGI GGATG 3 cut(s) 187, 829, 1008
BseLI CCNNNNNNNGG 4 cut(s) 251, 350, 677, 1226
BseMI GCAATG 1 cut(s) 293
BseMII CTCAG 3 cut(s) 369, 738, 1065
BseNI ACTGG 5 cut(s) 76, 354, 612, 641, 833
BseRI GAGGAG 1 cut(s) 707
BseXI GCAGC 2 cut(s) 373, 730
BseYI CCCAGC 1 cut(s) 666
BshFI GGCC 1 cut(s) 1013
BshNI GGYRCC 2 cut(s) 416, 1057
BsiHKAI GWGCWC 2 cut(s) 412, 1143
BsiSI CCGG 2 cut(s) 179, 722
BslFI GGGAC 2 cut(s) 171, 905
BslI CCNNNNNNNGG 4 cut(s) 251, 350, 677, 1226
BsmAI GTCTC 2 cut(s) 118, 829
BsmFI GGGAC 2 cut(s) 171, 905
BsmI GAATGC 1 cut(s) 460
BsnI GGCC 1 cut(s) 1013
Bsp1286I GDGCHC 3 cut(s) 412, 699, 1143
Bsp143I GATC 5 cut(s) 302, 684, 793, 1006, 1203
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 4 cut(s) 164, 551, 1000, 1015
BspANI GGCC 1 cut(s) 1013
BspCNI CTCAG 3 cut(s) 370, 739, 1064
BspHI TCATGA 1 cut(s) 522
BspMAI CTGCAG 1 cut(s) 64
BspPI GGATC 3 cut(s) 297, 310, 1014
BspQI GCTCTTC 1 cut(s) 1091
BspT107I GGYRCC 2 cut(s) 416, 1057
BsrDI GCAATG 1 cut(s) 293
BsrFI RCCGGY 1 cut(s) 721
BsrI ACTGG 5 cut(s) 76, 354, 612, 641, 833
BssAI RCCGGY 1 cut(s) 721
BssECI CCNNGG 3 cut(s) 306, 576, 1090
BssMI GATC 5 cut(s) 302, 684, 793, 1006, 1203
BssNAI GTATAC 1 cut(s) 69
BssNI GRCGYC 1 cut(s) 1245
BssT1I CCWWGG 1 cut(s) 306
Bst1107I GTATAC 1 cut(s) 69
Bst2UI CCWGG 2 cut(s) 578, 1214
Bst4CI ACNGT 2 cut(s) 840, 958
Bst6I CTCTTC 4 cut(s) 398, 753, 827, 1091
BstACI GRCGYC 1 cut(s) 1245
BstAPI GCANNNNNTGC 2 cut(s) 416, 743
BstBAI YACGTR 1 cut(s) 505
BstC8I GCNNGC 8 cut(s) 18, 214, 226, 624, 663, 672, 723, 1015
BstDEI CTNAG 5 cut(s) 378, 528, 675, 747, 1051
BstDSI CCRYGG 2 cut(s) 306, 1090
BstF5I GGATG 3 cut(s) 187, 829, 1008
BstKTI GATC 5 cut(s) 305, 687, 796, 1009, 1206
BstMAI GTCTC 2 cut(s) 118, 829
BstMBI GATC 5 cut(s) 302, 684, 793, 1006, 1203
BstMWI GCNNNNNNNGC 6 cut(s) 383, 395, 416, 667, 671, 743
BstNI CCWGG 2 cut(s) 578, 1214
BstNSI RCATGY 3 cut(s) 20, 557, 898
BstPAI GACNNNNGTC 1 cut(s) 578
BstSCI CCNGG 2 cut(s) 576, 1212
BstSFI CTRYAG 2 cut(s) 60, 1144
BstV1I GCAGC 2 cut(s) 373, 730
BstV2I GAAGAC 2 cut(s) 32, 1215
BstX2I RGATCY 2 cut(s) 302, 1006
BstYI RGATCY 2 cut(s) 302, 1006
BstZ17I GTATAC 1 cut(s) 69
BsuI GTATCC 1 cut(s) 905
BsuRI GGCC 1 cut(s) 1013
BtgI CCRYGG 2 cut(s) 306, 1090
BtsCI GGATG 3 cut(s) 187, 829, 1008
BtsIMutI CAGTG 1 cut(s) 971
Cac8I GCNNGC 8 cut(s) 18, 214, 226, 624, 663, 672, 723, 1015
CaiI CAGNNNCTG 1 cut(s) 743
CciI TCATGA 1 cut(s) 522
Cfr10I RCCGGY 1 cut(s) 721
Cfr13I GGNCC 3 cut(s) 185, 573, 1012
CseI GACGC 1 cut(s) 1253
Csp6I GTAC 7 cut(s) 337, 502, 605, 841, 898, 934, 940
CspCI CAANNNNNGTGG 2 cut(s) 967, 1002
CviAII CATG 6 cut(s) 17, 106, 307, 523, 554, 895
CviQI GTAC 7 cut(s) 337, 502, 605, 841, 898, 934, 940
DdeI CTNAG 5 cut(s) 378, 528, 675, 747, 1051
DpnI GATC 5 cut(s) 304, 686, 795, 1008, 1205
DpnII GATC 5 cut(s) 302, 684, 793, 1006, 1203
DraIII CACNNNGTG 1 cut(s) 416
DrdI GACNNNNNNGTC 2 cut(s) 110, 485
DseDI GACNNNNNNGTC 2 cut(s) 110, 485
Eam1104I CTCTTC 4 cut(s) 398, 753, 827, 1091
EarI CTCTTC 4 cut(s) 398, 753, 827, 1091
Ecl136II GAGCTC 1 cut(s) 1141
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 699, 1143
Eco47I GGWCC 2 cut(s) 185, 573
Eco53kI GAGCTC 1 cut(s) 1141
Eco57I CTGAAG 3 cut(s) 525, 927, 980
EcoICRI GAGCTC 1 cut(s) 1141
EcoRII CCWGG 2 cut(s) 576, 1212
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 2 cut(s) 699, 1143
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 6 cut(s) 20, 109, 310, 526, 557, 898
FalI AAGNNNNNCTT 6 cut(s) 72, 104, 845, 877, 1010, 1042
FaqI GGGAC 2 cut(s) 171, 905
FatI CATG 6 cut(s) 16, 105, 306, 522, 553, 894
FauI CCCGC 1 cut(s) 1022
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 2 cut(s) 387, 744
FokI GGATG 3 cut(s) 194, 836, 1015
FriOI GRGCYC 2 cut(s) 699, 1143
Fsp4HI GCNGC 2 cut(s) 387, 744
FspBI CTAG 2 cut(s) 413, 452
GluI GCNGC 2 cut(s) 387, 744
GsaI CCCAGC 1 cut(s) 670
GsuI CTGGAG 1 cut(s) 357
HaeIII GGCC 1 cut(s) 1013
HapII CCGG 2 cut(s) 179, 722
HgaI GACGC 1 cut(s) 1253
Hin1I GRCGYC 1 cut(s) 1245
Hin1II CATG 6 cut(s) 20, 109, 310, 526, 557, 898
HincII GTYRAC 2 cut(s) 1162, 1195
HindII GTYRAC 2 cut(s) 1162, 1195
HinfI GANTC 3 cut(s) 784, 885, 990
HpaII CCGG 2 cut(s) 179, 722
HphI GGTGA 2 cut(s) 623, 1081
Hpy166II GTNNAC 3 cut(s) 69, 1162, 1195
Hpy188I TCNGA 4 cut(s) 264, 544, 1054, 1171
Hpy188III TCNNGA 6 cut(s) 128, 523, 571, 791, 967, 1114
Hpy8I GTNNAC 3 cut(s) 69, 1162, 1195
HpyAV CCTTC 5 cut(s) 151, 902, 973, 1004, 1066
HpyCH4III ACNGT 2 cut(s) 840, 958
HpyCH4IV ACGT 2 cut(s) 504, 519
HpyCH4V TGCA 9 cut(s) 16, 20, 62, 92, 224, 398, 495, 647, 653
HpyF10VI GCNNNNNNNGC 6 cut(s) 383, 395, 416, 667, 671, 743
HpyF3I CTNAG 5 cut(s) 378, 528, 675, 747, 1051
HpySE526I ACGT 2 cut(s) 504, 519
Hsp92I GRCGYC 1 cut(s) 1245
Hsp92II CATG 6 cut(s) 20, 109, 310, 526, 557, 898
KroI GCCGGC 1 cut(s) 721
KroNI GCCGGC 1 cut(s) 723
Kzo9I GATC 5 cut(s) 302, 684, 793, 1006, 1203
LguI GCTCTTC 1 cut(s) 1091
LmnI GCTCC 6 cut(s) 694, 718, 769, 1138, 1186, 1216
Lsp1109I GCAGC 2 cut(s) 373, 730
LweI GCATC 3 cut(s) 307, 656, 1026
MaeI CTAG 2 cut(s) 413, 452
MaeII ACGT 2 cut(s) 504, 519
MaeIII GTNAC 5 cut(s) 41, 172, 200, 466, 967
MalI GATC 5 cut(s) 304, 686, 795, 1008, 1205
MboI GATC 5 cut(s) 302, 684, 793, 1006, 1203
MboII GAAGA 8 cut(s) 37, 359, 415, 770, 844, 1045, 1078, 1220
MflI RGATCY 2 cut(s) 302, 1006
MhlI GDGCHC 3 cut(s) 412, 699, 1143
MluCI AATT 3 cut(s) 496, 1101, 1109
MroNI GCCGGC 1 cut(s) 721
MseI TTAA 2 cut(s) 143, 879
MspA1I CMGCKG 4 cut(s) 166, 377, 1000, 1149
MspI CCGG 2 cut(s) 179, 722
MspR9I CCNGG 2 cut(s) 578, 1214
Mva1269I GAATGC 1 cut(s) 460
MvaI CCWGG 2 cut(s) 578, 1214
MwoI GCNNNNNNNGC 6 cut(s) 383, 395, 416, 667, 671, 743
NaeI GCCGGC 1 cut(s) 723
NcoI CCATGG 1 cut(s) 306
NdeII GATC 5 cut(s) 302, 684, 793, 1006, 1203
NgoMIV GCCGGC 1 cut(s) 721
NlaIII CATG 6 cut(s) 20, 109, 310, 526, 557, 898
NmuCI GTSAC 1 cut(s) 967
NspI RCATGY 3 cut(s) 20, 557, 898
PaeI GCATGC 1 cut(s) 20
PagI TCATGA 1 cut(s) 522
PciI ACATGT 1 cut(s) 894
PciSI GCTCTTC 1 cut(s) 1091
PctI GAATGC 1 cut(s) 460
PdiI GCCGGC 1 cut(s) 723
PfeI GAWTC 3 cut(s) 784, 885, 990
PkrI GCNGC 2 cut(s) 388, 745
Ppu21I YACGTR 1 cut(s) 505
PscI ACATGT 1 cut(s) 894
PshAI GACNNNNGTC 1 cut(s) 578
Psp124BI GAGCTC 1 cut(s) 1143
Psp6I CCWGG 2 cut(s) 576, 1212
PspFI CCCAGC 1 cut(s) 666
PspGI CCWGG 2 cut(s) 576, 1212
PspPI GGNCC 3 cut(s) 185, 573, 1012
PsrI GAACNNNNNNTAC 2 cut(s) 494, 526
PstI CTGCAG 1 cut(s) 64
PstNI CAGNNNCTG 1 cut(s) 743
PsuI RGATCY 2 cut(s) 302, 1006
PvuII CAGCTG 2 cut(s) 377, 1149
RsaI GTAC 7 cut(s) 338, 503, 606, 842, 899, 935, 941
RsaNI GTAC 7 cut(s) 337, 502, 605, 841, 898, 934, 940
SacI GAGCTC 1 cut(s) 1143
SapI GCTCTTC 1 cut(s) 1091
SaqAI TTAA 2 cut(s) 143, 879
SatI GCNGC 2 cut(s) 387, 744
Sau3AI GATC 5 cut(s) 302, 684, 793, 1006, 1203
Sau96I GGNCC 3 cut(s) 185, 573, 1012
ScrFI CCNGG 2 cut(s) 578, 1214
SduI GDGCHC 3 cut(s) 412, 699, 1143
SfaNI GCATC 3 cut(s) 307, 656, 1026
SfcI CTRYAG 2 cut(s) 60, 1144
SinI GGWCC 2 cut(s) 185, 573
SphI GCATGC 1 cut(s) 20
Sse9I AATT 3 cut(s) 496, 1101, 1109
SsiI CCGC 4 cut(s) 164, 551, 1000, 1015
SspI AATATT 1 cut(s) 134
SspMI CTAG 2 cut(s) 413, 452
SstI GAGCTC 1 cut(s) 1143
StyD4I CCNGG 2 cut(s) 576, 1212
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 2 cut(s) 840, 958
TaiI ACGT 2 cut(s) 507, 522
TaqI TCGA 3 cut(s) 282, 1206, 1224
TasI AATT 3 cut(s) 496, 1101, 1109
TatI WGTACW 3 cut(s) 840, 933, 939
TfiI GAWTC 3 cut(s) 784, 885, 990
Tru1I TTAA 2 cut(s) 143, 879
Tru9I TTAA 2 cut(s) 143, 879
TscAI CASTG 1 cut(s) 978
TseFI GTSAC 1 cut(s) 967
TseI GCWGC 2 cut(s) 386, 743
Tsp45I GTSAC 1 cut(s) 967
TspDTI ATGAA 1 cut(s) 1188
TspGWI ACGGA 2 cut(s) 854, 1079
TspRI CASTG 1 cut(s) 978
VpaK11BI GGWCC 2 cut(s) 185, 573
XapI RAATTY 2 cut(s) 1101, 1109
XceI RCATGY 3 cut(s) 20, 557, 898
XmiI GTMKAC 1 cut(s) 68
XspI CTAG 2 cut(s) 413, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.