Rw7G033930

Elongation factor

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
50106301 .. 50110847
4547 bp
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UTR
Exon/CDS
Intron
Rw7G033930.1

Sequence Viewer

Length: 1215 bp
ATGTTGGTGAATGTGCTGCACGCTGGGAACACCAATAAGAATGGTTACAAGGCACTTATTGCTGCCGAGTTCAGCGGTGTCAATGTTGACCTGGTGAAGGATTTCGAGATGGGGGTGTCGAACAAGACTCCCGAGTTTCTCAAAATGAATCCCATTGGGAAGGTTCCTGTGTTGGAAAAGCTGGACAGTCCTGTTTTTGAGAGCAATGCAATGCCATTGCGCGATATGGTGAGGGATCTATTTACTCGTTTGAAGGCGGATAATCCCCTTTATGGTTCTTCCTTGATCGAATATGCCCTTGTGGAGCAATGGATTGATTTTGCAACATTAGAGATTGATGCCAATATTTTGCGTTGGTTCATACCGCGTATCGGTTTTGCAGTCTACCTTCCTCCGGCTGAGGAAGCTGCAATTTCTTCCTTGAAGAGAGCACTACCTGCTTTGAACACTCATCTTGCTTCCAACACGTACTTAGTTGGGCACTCTCTGACATTGGCTGATATCATTATGATATGTAATTTAACACTGGGATTTAACCGGTTGTTGACAAAAAATTTTACCTCGGAATTTCCTCATGTTGAGAGATACTTTTGGACATTGGTTAGTCAGCCTAATTTTCGCAAGATACTGGGTGAGGTGAAACAAGCTGAATCTGTTCCAGCTGTTCAGTCAGCAAAGAAGCCTTCTCAGCCTAAGGAACCTGCAAAGAAAGAGGCCAAGAAAGAAGTGAAGAAAGAACCGGCAAAACCTAAAGTAGAAGAGGCTCTGGAGGAAGAGGCACCCAAGCCCAAGGCAAAGAATCCTCTTGATCTTTTGCCTCCTAGCAAGATGATTCTGGATGAATGGAAAAGGCTTTATTCAAACACAAAGACCAACTTCCGCTTCTGGGACATGTATGATCCAAAGGGTTACTCCCTTTGGTTTTGCGATTACAAATACAACGATGAAAATACAGTTTCATTTGTGACTTTGAACAAGGTGGGCTGTTTTCTGCAGCGGATGGATTTGGCTCGTAAATATGCGTTTGAACAAGGTGGGCTGTTTTCTGATCCTCCTTTCAAGTTCATAATTGATGAATGTTATGACATGGAACTGTATGATTGGTGTAAGGTTGATATAACTGATGAGGATCAAAAGGAGCGCGTGAACCAGATGATTGAAGATCACGAGCCTTTTGAGGGGGAGGCTTTGTTGGATGCCAAATGCTTCAAGTGA

Protein Analysis

404

Amino Acids

46.34

Weight (kDa)

5.54

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 13 - 70 8.4e-08 Glutathione S-transferase, N-terminal domain
GST_C PF00043 135 - 204 6.9e-11 Glutathione S-transferase, C-terminal domain
EF1G PF00647 264 - 348 3.2e-28 Elongation factor 1 gamma, conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 445, 709
AccB1I GGYRCC 1 cut(s) 778
AccI GTMKAC 1 cut(s) 384
AccII CGCG 3 cut(s) 222, 367, 1143
AciI CCGC 5 cut(s) 75, 257, 365, 880, 997
AclWI GGATC 4 cut(s) 243, 893, 1043, 1137
AcsI RAATTY 2 cut(s) 553, 566
AfaI GTAC 1 cut(s) 470
AfiI CCNNNNNNNGG 6 cut(s) 97, 272, 371, 394, 886, 1178
AflIII ACRYGT 2 cut(s) 465, 891
AgeI ACCGGT 1 cut(s) 537
AgsI TTSAA 9 cut(s) 253, 424, 445, 861, 973, 1028, 1060, 1160, 1210
AjnI CCWGG 1 cut(s) 90
AjuI GAANNNNNNNTTGG 2 cut(s) 866, 898
AluBI AGCT 4 cut(s) 181, 407, 647, 662
AluI AGCT 4 cut(s) 181, 407, 647, 662
Alw21I GWGCWC 1 cut(s) 433
AlwI GGATC 4 cut(s) 243, 893, 1043, 1137
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 1 cut(s) 714
ApeKI GCWGC 4 cut(s) 16, 62, 407, 994
ApoI RAATTY 2 cut(s) 553, 566
AsiGI ACCGGT 1 cut(s) 537
Asp700I GAANNNNTTC 2 cut(s) 101, 654
AspLEI GCGC 2 cut(s) 222, 1143
AsuHPI GGTGA 5 cut(s) 19, 106, 241, 644, 649
AvaI CYCGRG 1 cut(s) 131
AxyI CCTNAGG 1 cut(s) 693
BaeGI GKGCMC 1 cut(s) 483
BanI GGYRCC 1 cut(s) 778
BauI CACGAG 1 cut(s) 1166
Bbv12I GWGCWC 1 cut(s) 433
BbvCI CCTCAGC 1 cut(s) 399
BbvI GCAGC 4 cut(s) 3, 49, 394, 1006
BccI CCATC 2 cut(s) 103, 994
BciT130I CCWGG 1 cut(s) 92
BfaI CTAG 1 cut(s) 822
BfmI CTRYAG 1 cut(s) 992
BfuAI ACCTGC 2 cut(s) 445, 709
BisI GCNGC 4 cut(s) 17, 63, 408, 995
BlsI GCNGC 4 cut(s) 18, 64, 409, 996
Bme1390I CCNGG 1 cut(s) 92
BmeT110I CYCGRG 1 cut(s) 131
BmiI GGNNCC 3 cut(s) 165, 699, 780
BmrFI CCNGG 1 cut(s) 92
BmrI ACTGGG 2 cut(s) 536, 638
BmsI GCATC 2 cut(s) 328, 1186
BmuI ACTGGG 2 cut(s) 536, 638
BpmI CTGGAG 1 cut(s) 788
Bpu10I CCTNAGC 1 cut(s) 399
BsaAI YACGTR 1 cut(s) 468
BsaBI GATNNNNATC 1 cut(s) 1128
BsaJI CCNNGG 2 cut(s) 561, 789
BsaWI WCCGGW 1 cut(s) 537
BsaXI ACNNNNNCTCC 2 cut(s) 1175, 1205
Bsc4I CCNNNNNNNGG 6 cut(s) 97, 272, 371, 394, 886, 1178
Bse118I RCCGGY 2 cut(s) 537, 739
Bse1I ACTGG 2 cut(s) 531, 633
Bse21I CCTNAGG 1 cut(s) 693
Bse3DI GCAATG 4 cut(s) 211, 215, 216, 314
Bse8I GATNNNNATC 1 cut(s) 1128
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 2 cut(s) 561, 789
BseGI GGATG 3 cut(s) 844, 1005, 1201
BseJI GATNNNNATC 1 cut(s) 1128
BseLI CCNNNNNNNGG 6 cut(s) 97, 272, 371, 394, 886, 1178
BseMI GCAATG 4 cut(s) 211, 215, 216, 314
BseMII CTCAG 2 cut(s) 390, 701
BseNI ACTGG 2 cut(s) 531, 633
BseSI GKGCMC 1 cut(s) 483
BseXI GCAGC 4 cut(s) 3, 49, 394, 1006
BseYI CCCAGC 1 cut(s) 23
Bsh1236I CGCG 3 cut(s) 222, 367, 1143
BshFI GGCC 1 cut(s) 716
BshNI GGYRCC 1 cut(s) 778
BshTI ACCGGT 1 cut(s) 537
BsiHKAI GWGCWC 1 cut(s) 433
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 3 cut(s) 395, 538, 740
BslFI GGGAC 1 cut(s) 902
BslI CCNNNNNNNGG 6 cut(s) 97, 272, 371, 394, 886, 1178
BsmFI GGGAC 1 cut(s) 902
BsnI GGCC 1 cut(s) 716
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 2 cut(s) 433, 483
Bsp143I GATC 7 cut(s) 235, 285, 808, 898, 1048, 1129, 1162
BspACI CCGC 5 cut(s) 75, 257, 365, 880, 997
BspANI GGCC 1 cut(s) 716
BspCNI CTCAG 2 cut(s) 391, 700
BspFNI CGCG 3 cut(s) 222, 367, 1143
BspLI GGNNCC 3 cut(s) 165, 699, 780
BspMAI CTGCAG 1 cut(s) 996
BspMI ACCTGC 2 cut(s) 445, 709
BspPI GGATC 4 cut(s) 243, 893, 1043, 1137
BspT107I GGYRCC 1 cut(s) 778
BsrDI GCAATG 4 cut(s) 211, 215, 216, 314
BsrFI RCCGGY 2 cut(s) 537, 739
BsrI ACTGG 2 cut(s) 531, 633
BssAI RCCGGY 2 cut(s) 537, 739
BssECI CCNNGG 2 cut(s) 561, 789
BssMI GATC 7 cut(s) 235, 285, 808, 898, 1048, 1129, 1162
BssSI CACGAG 1 cut(s) 1166
BssT1I CCWWGG 1 cut(s) 789
Bst2BI CACGAG 1 cut(s) 1166
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 3 cut(s) 188, 955, 1095
Bst6I CTCTTC 3 cut(s) 419, 753, 768
BstAPI GCANNNNNTGC 2 cut(s) 59, 437
BstBAI YACGTR 1 cut(s) 468
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 4 cut(s) 399, 472, 687, 693
BstENI CCTNNNNNAGG 1 cut(s) 95
BstF5I GGATG 3 cut(s) 844, 1005, 1201
BstFNI CGCG 3 cut(s) 222, 367, 1143
BstHHI GCGC 2 cut(s) 222, 1143
BstKTI GATC 7 cut(s) 238, 288, 811, 901, 1051, 1132, 1165
BstMBI GATC 7 cut(s) 235, 285, 808, 898, 1048, 1129, 1162
BstMWI GCNNNNNNNGC 4 cut(s) 59, 404, 437, 688
BstNI CCWGG 1 cut(s) 92
BstNSI RCATGY 1 cut(s) 895
BstSCI CCNGG 1 cut(s) 90
BstSFI CTRYAG 1 cut(s) 992
BstSLI GKGCMC 1 cut(s) 483
BstUI CGCG 3 cut(s) 222, 367, 1143
BstV1I GCAGC 4 cut(s) 3, 49, 394, 1006
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
Bsu36I CCTNAGG 1 cut(s) 693
BsuRI GGCC 1 cut(s) 716
BtsCI GGATG 3 cut(s) 844, 1005, 1201
BtsIMutI CAGTG 1 cut(s) 524
BveI ACCTGC 2 cut(s) 445, 709
Cac8I GCNNGC 1 cut(s) 21
CfoI GCGC 2 cut(s) 222, 1143
Cfr10I RCCGGY 2 cut(s) 537, 739
CsiI ACCWGGT 1 cut(s) 90
Csp6I GTAC 1 cut(s) 469
CspAI ACCGGT 1 cut(s) 537
CviAII CATG 3 cut(s) 575, 892, 1087
CviQI GTAC 1 cut(s) 469
DdeI CTNAG 4 cut(s) 399, 472, 687, 693
DpnI GATC 7 cut(s) 237, 287, 810, 900, 1050, 1131, 1164
DpnII GATC 7 cut(s) 235, 285, 808, 898, 1048, 1129, 1162
Eam1104I CTCTTC 3 cut(s) 419, 753, 768
EarI CTCTTC 3 cut(s) 419, 753, 768
EciI GGCGGA 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 789
Eco32I GATATC 1 cut(s) 502
Eco81I CCTNAGG 1 cut(s) 693
Eco88I CYCGRG 1 cut(s) 131
EcoNI CCTNNNNNAGG 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 90
EcoRV GATATC 1 cut(s) 502
EcoT14I CCWWGG 1 cut(s) 789
ErhI CCWWGG 1 cut(s) 789
FaeI CATG 3 cut(s) 578, 895, 1090
FalI AAGNNNNNCTT 2 cut(s) 860, 892
FaqI GGGAC 1 cut(s) 902
FatI CATG 3 cut(s) 574, 891, 1086
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 4 cut(s) 17, 63, 408, 995
FokI GGATG 3 cut(s) 851, 1012, 1208
Fsp4HI GCNGC 4 cut(s) 17, 63, 408, 995
FspBI CTAG 1 cut(s) 822
GlaI GCGC 2 cut(s) 221, 1142
GluI GCNGC 4 cut(s) 17, 63, 408, 995
GsaI CCCAGC 1 cut(s) 27
GsuI CTGGAG 1 cut(s) 788
HaeIII GGCC 1 cut(s) 716
HapII CCGG 3 cut(s) 395, 538, 740
HhaI GCGC 2 cut(s) 222, 1143
Hin1II CATG 3 cut(s) 578, 895, 1090
Hin6I GCGC 2 cut(s) 220, 1141
HinP1I GCGC 2 cut(s) 220, 1141
HincII GTYRAC 2 cut(s) 88, 546
HindII GTYRAC 2 cut(s) 88, 546
HinfI GANTC 5 cut(s) 127, 148, 650, 799, 832
HpaII CCGG 3 cut(s) 395, 538, 740
HphI GGTGA 5 cut(s) 19, 106, 241, 644, 649
Hpy166II GTNNAC 4 cut(s) 88, 385, 546, 1147
Hpy188I TCNGA 3 cut(s) 489, 565, 1048
Hpy188III TCNNGA 6 cut(s) 106, 131, 767, 806, 836, 1166
Hpy8I GTNNAC 4 cut(s) 88, 385, 546, 1147
HpyAV CCTTC 5 cut(s) 91, 154, 247, 398, 693
HpyCH4III ACNGT 3 cut(s) 188, 955, 1095
HpyCH4IV ACGT 1 cut(s) 467
HpyCH4V TGCA 7 cut(s) 19, 209, 323, 380, 410, 704, 994
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 404, 437, 688
HpyF3I CTNAG 4 cut(s) 399, 472, 687, 693
HpySE526I ACGT 1 cut(s) 467
Hsp92II CATG 3 cut(s) 578, 895, 1090
HspAI GCGC 2 cut(s) 220, 1141
Kzo9I GATC 7 cut(s) 235, 285, 808, 898, 1048, 1129, 1162
LmnI GCTCC 2 cut(s) 304, 1138
Lsp1109I GCAGC 4 cut(s) 3, 49, 394, 1006
LweI GCATC 2 cut(s) 328, 1186
MabI ACCWGGT 1 cut(s) 90
MaeI CTAG 1 cut(s) 822
MaeII ACGT 1 cut(s) 467
MaeIII GTNAC 3 cut(s) 44, 908, 964
MalI GATC 7 cut(s) 237, 287, 810, 900, 1050, 1131, 1164
MboI GATC 7 cut(s) 235, 285, 808, 898, 1048, 1129, 1162
MboII GAAGA 7 cut(s) 270, 408, 436, 742, 770, 785, 1172
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 2 cut(s) 433, 483
MluCI AATT 6 cut(s) 411, 517, 553, 566, 613, 1068
MlyI GAGTC 1 cut(s) 121
MmeI TCCRAC 3 cut(s) 153, 486, 1173
MroXI GAANNNNTTC 2 cut(s) 101, 654
MseI TTAA 2 cut(s) 521, 534
MspA1I CMGCKG 3 cut(s) 75, 662, 997
MspI CCGG 3 cut(s) 395, 538, 740
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
MvnI CGCG 3 cut(s) 222, 367, 1143
MwoI GCNNNNNNNGC 4 cut(s) 59, 404, 437, 688
NdeII GATC 7 cut(s) 235, 285, 808, 898, 1048, 1129, 1162
NlaIII CATG 3 cut(s) 578, 895, 1090
NlaIV GGNNCC 3 cut(s) 165, 699, 780
NmeAIII GCCGAG 1 cut(s) 91
NmuCI GTSAC 1 cut(s) 964
NspI RCATGY 1 cut(s) 895
PciI ACATGT 1 cut(s) 891
PdmI GAANNNNTTC 2 cut(s) 101, 654
PfeI GAWTC 4 cut(s) 148, 650, 799, 832
PinAI ACCGGT 1 cut(s) 537
PkrI GCNGC 4 cut(s) 18, 64, 409, 996
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Ppu21I YACGTR 1 cut(s) 468
PscI ACATGT 1 cut(s) 891
Psp6I CCWGG 1 cut(s) 90
PspFI CCCAGC 1 cut(s) 23
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 3 cut(s) 165, 699, 780
PstI CTGCAG 1 cut(s) 996
PsuI RGATCY 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 662
RsaI GTAC 1 cut(s) 470
RsaNI GTAC 1 cut(s) 469
SaqAI TTAA 2 cut(s) 521, 534
SatI GCNGC 4 cut(s) 17, 63, 408, 995
Sau3AI GATC 7 cut(s) 235, 285, 808, 898, 1048, 1129, 1162
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 2 cut(s) 433, 483
SexAI ACCWGGT 1 cut(s) 90
SfaNI GCATC 2 cut(s) 328, 1186
SfcI CTRYAG 1 cut(s) 992
Sse9I AATT 6 cut(s) 411, 517, 553, 566, 613, 1068
SsiI CCGC 5 cut(s) 75, 257, 365, 880, 997
SspI AATATT 1 cut(s) 346
SspMI CTAG 1 cut(s) 822
StyD4I CCNGG 1 cut(s) 90
StyI CCWWGG 1 cut(s) 789
TaaI ACNGT 3 cut(s) 188, 955, 1095
TaiI ACGT 1 cut(s) 470
TaqI TCGA 3 cut(s) 105, 119, 288
TasI AATT 6 cut(s) 411, 517, 553, 566, 613, 1068
TfiI GAWTC 4 cut(s) 148, 650, 799, 832
Tru1I TTAA 2 cut(s) 521, 534
Tru9I TTAA 2 cut(s) 521, 534
TscAI CASTG 1 cut(s) 531
TseFI GTSAC 1 cut(s) 964
TseI GCWGC 4 cut(s) 16, 62, 407, 994
Tsp45I GTSAC 1 cut(s) 964
TspDTI ATGAA 7 cut(s) 161, 349, 855, 948, 960, 1054, 1089
TspRI CASTG 1 cut(s) 531
XagI CCTNNNNNAGG 1 cut(s) 95
XapI RAATTY 2 cut(s) 553, 566
XceI RCATGY 1 cut(s) 895
XmiI GTMKAC 1 cut(s) 384
XmnI GAANNNNTTC 2 cut(s) 101, 654
XspI CTAG 1 cut(s) 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.