Rw7G028550

Elongation factor

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
38935800 .. 38938612
2813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G028550.1

Sequence Viewer

Length: 1224 bp
ATGGCTCTGGTCCTGCATGCAGGGAGTACAAACAAAAATGCGTACAAGACTCTCATTGCTGCAGAGTATACAGGTGTGAAAGTTGCACTTGCACCCAACTTTGAGATGGGCGTCTCGAACAAGACTCCTGAATTTCTCAAGATGAACCCGATTGGGAAGGTTCCGGTGCTGGAAACACCTGATGGTCCCATCTTCGAGAGTAATGCCATTGCACGTTACGTTACTCGCTTGAAGGCTGACAATCCTCTTTATGGTTCATCTTCAATTGATTATGCCCATATCGAGCAATGGATTGATTTTGGATCCTTGGAGATTGATGCTAACATTGTTAATTGGTTTAGACCAAGAATGGGAAGGACTGTCTATCTTCCTCCAGCGGAGGAAGCTGCAATTGCTGCATTGAAGAGAGCACTGGGTGCATTGAACTTACACCTTGCTTCCTGCACATACCTTGTTGGGGATTCTGTCACCCTTGCTGACATCATTATGACATGCAATTTGTTTATGGGCTTCACTAAGCTCATGACTAAGAGCTTCACTTCAGAGTTTCCTCATGTTGAGAGATACTTCTGGACCATGGTCAATCAACCAAACTTCAAAAAGGTATTGGGTGAGGTTAAGCAGACGGATTCTGTTCCTGCTGTTCAATCTGCAAAGAAGCCTGCCCAGGCCAAAGAATCTGCTAAACCCAAGGCTAAGGAGGCAGAAGCTGAGGAGGAAGAGGCACCAAAGCCAAAACCCAAGAATCCTCTTGATCTGCTTCCCCCGAGTAAGATGATATTGGATGACTGGAAAAGGCTTTACTCTAACACGAAGACCAACTTCCGTGAGGTGGCAATTAAAGGATTCTGGGACATGTACGATCCTGAGGGATATTCTCTTTGGTTCTGTGATTACAAGTACAATGATGAGAATACTGTTTCCTTTGTGACGCTGAACAAGGTCGGTGGATTTCTCCAGCGGATGGATCTGGCCCGCAAGTATGCTTTTGGGAAGATGCTAATTATTGGTGCAGACCCACCATACAAGGTGAAGGGCTTGTGGCTCTTCCGTGGCCCAGAAATCCCTGAATTTGTGATGAATGAGTGCTATGACATGGAGCTTTTTGAGTGGACCAAGGTCGACATCTCAGATGAAAACCAAAAGGAGCGTGTGAGTCAGATGATTGAAGACCAGGAGCCTTTTGAGGGAGAGCCTCTTTTGGATGCCAAATGCTTCAAGTGA

Protein Analysis

407

Amino Acids

46.13

Weight (kDa)

5.55

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 8 - 75 3.8e-14 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 14 - 75 3.7e-08 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 16 - 80 8.4e-07 Glutathione S-transferase, N-terminal domain
GST_C PF00043 127 - 197 2.6e-11 Glutathione S-transferase, C-terminal domain
EF1G PF00647 246 - 353 2.7e-41 Elongation factor 1 gamma, conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 724
AccB7I CCANNNNNTGG 1 cut(s) 964
AccI GTMKAC 2 cut(s) 68, 1122
AciI CCGC 3 cut(s) 377, 961, 976
AclWI GGATC 4 cut(s) 297, 310, 857, 975
AcsI RAATTY 2 cut(s) 131, 1070
AcuI CTGAAG 1 cut(s) 525
AcyI GRCGYC 1 cut(s) 111
AdeI CACNNNGTG 1 cut(s) 416
AfaI GTAC 4 cut(s) 28, 44, 860, 902
AfiI CCNNNNNNNGG 6 cut(s) 251, 350, 457, 832, 964, 1187
AflIII ACRYGT 1 cut(s) 855
AgsI TTSAA 8 cut(s) 232, 264, 403, 424, 598, 647, 1169, 1219
AjnI CCWGG 2 cut(s) 666, 1173
AluBI AGCT 5 cut(s) 386, 520, 534, 710, 1102
AluI AGCT 5 cut(s) 386, 520, 534, 710, 1102
Alw21I GWGCWC 1 cut(s) 412
Alw26I GTCTC 1 cut(s) 118
AlwI GGATC 4 cut(s) 297, 310, 857, 975
AlwNI CAGNNNCTG 1 cut(s) 710
Ama87I CYCGRG 1 cut(s) 766
AoxI GGCC 3 cut(s) 669, 972, 1054
ApeKI GCWGC 3 cut(s) 59, 386, 395
ApoI RAATTY 2 cut(s) 131, 1070
ArsI GACNNNNNNTTYG 2 cut(s) 481, 513
AspS9I GGNCC 6 cut(s) 10, 185, 573, 973, 1055, 1113
AsuHPI GGTGA 3 cut(s) 460, 623, 1042
AvaI CYCGRG 1 cut(s) 766
AvaII GGWCC 4 cut(s) 10, 185, 573, 1113
AxyI CCTNAGG 1 cut(s) 867
BamHI GGATCC 1 cut(s) 302
BanI GGYRCC 1 cut(s) 724
BbsI GAAGAC 2 cut(s) 821, 1176
Bbv12I GWGCWC 1 cut(s) 412
BbvCI CCTCAGC 1 cut(s) 711
BbvI GCAGC 3 cut(s) 46, 373, 382
BccI CCATC 4 cut(s) 100, 176, 197, 958
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BciT130I CCWGG 2 cut(s) 668, 1175
BcoDI GTCTC 1 cut(s) 118
BfmI CTRYAG 1 cut(s) 60
BisI GCNGC 3 cut(s) 60, 387, 396
BlsI GCNGC 3 cut(s) 61, 388, 397
Bme1390I CCNGG 2 cut(s) 668, 1175
Bme18I GGWCC 4 cut(s) 10, 185, 573, 1113
BmeT110I CYCGRG 1 cut(s) 766
BmgT120I GGNCC 6 cut(s) 10, 185, 573, 973, 1055, 1113
BmiI GGNNCC 5 cut(s) 162, 187, 304, 726, 1179
BmrFI CCNGG 2 cut(s) 668, 1175
BmrI ACTGGG 1 cut(s) 422
BmsI GCATC 3 cut(s) 307, 987, 1195
BmuI ACTGGG 1 cut(s) 422
BoxI GACNNNNGTC 2 cut(s) 578, 1118
BpiI GAAGAC 2 cut(s) 821, 1176
BpmI CTGGAG 2 cut(s) 357, 941
Bpu10I CCTNAGC 2 cut(s) 696, 711
BpuEI CTTGAG 1 cut(s) 122
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 6 cut(s) 306, 576, 666, 690, 1051, 1116
BsaWI WCCGGW 1 cut(s) 163
Bsc4I CCNNNNNNNGG 6 cut(s) 251, 350, 457, 832, 964, 1187
Bse1I ACTGG 2 cut(s) 417, 794
Bse21I CCTNAGG 1 cut(s) 867
Bse3DI GCAATG 3 cut(s) 54, 207, 293
BseBI CCWGG 2 cut(s) 668, 1175
BseDI CCNNGG 6 cut(s) 306, 576, 666, 690, 1051, 1116
BseGI GGATG 3 cut(s) 790, 969, 1210
BseLI CCNNNNNNNGG 6 cut(s) 251, 350, 457, 832, 964, 1187
BseMI GCAATG 3 cut(s) 54, 207, 293
BseMII CTCAG 3 cut(s) 702, 858, 1143
BseNI ACTGG 2 cut(s) 417, 794
BseRI GAGGAG 1 cut(s) 728
BseXI GCAGC 3 cut(s) 46, 373, 382
BsgI GTGCAG 2 cut(s) 427, 1032
BshFI GGCC 3 cut(s) 671, 974, 1056
BshNI GGYRCC 1 cut(s) 724
BsiHKAI GWGCWC 1 cut(s) 412
BsiHKCI CYCGRG 1 cut(s) 766
BsiSI CCGG 1 cut(s) 164
BslFI GGGAC 2 cut(s) 171, 866
BslI CCNNNNNNNGG 6 cut(s) 251, 350, 457, 832, 964, 1187
BsmAI GTCTC 1 cut(s) 118
BsmBI CGTCTC 1 cut(s) 118
BsmFI GGGAC 2 cut(s) 171, 866
BsnI GGCC 3 cut(s) 671, 974, 1056
BsoBI CYCGRG 1 cut(s) 766
Bsp1286I GDGCHC 1 cut(s) 412
Bsp143I GATC 4 cut(s) 302, 754, 862, 967
Bsp19I CCATGG 1 cut(s) 576
BspACI CCGC 3 cut(s) 377, 961, 976
BspANI GGCC 3 cut(s) 671, 974, 1056
BspCNI CTCAG 3 cut(s) 703, 859, 1142
BspHI TCATGA 1 cut(s) 522
BspLI GGNNCC 5 cut(s) 162, 187, 304, 726, 1179
BspMAI CTGCAG 1 cut(s) 64
BspPI GGATC 4 cut(s) 297, 310, 857, 975
BspQI GCTCTTC 1 cut(s) 1052
BspT107I GGYRCC 1 cut(s) 724
BsrDI GCAATG 3 cut(s) 54, 207, 293
BsrI ACTGG 2 cut(s) 417, 794
BssECI CCNNGG 6 cut(s) 306, 576, 666, 690, 1051, 1116
BssMI GATC 4 cut(s) 302, 754, 862, 967
BssNAI GTATAC 1 cut(s) 69
BssNI GRCGYC 1 cut(s) 111
BssT1I CCWWGG 4 cut(s) 306, 576, 690, 1116
Bst1107I GTATAC 1 cut(s) 69
Bst2UI CCWGG 2 cut(s) 668, 1175
Bst4CI ACNGT 2 cut(s) 361, 919
Bst6I CTCTTC 3 cut(s) 398, 714, 1052
BstACI GRCGYC 1 cut(s) 111
BstAPI GCANNNNNTGC 2 cut(s) 395, 416
BstC8I GCNNGC 3 cut(s) 18, 663, 976
BstDEI CTNAG 6 cut(s) 516, 528, 696, 711, 867, 1129
BstDSI CCRYGG 2 cut(s) 576, 1051
BstF5I GGATG 3 cut(s) 790, 969, 1210
BstKTI GATC 4 cut(s) 305, 757, 865, 970
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 4 cut(s) 302, 754, 862, 967
BstMWI GCNNNNNNNGC 5 cut(s) 383, 392, 395, 416, 701
BstNI CCWGG 2 cut(s) 668, 1175
BstNSI RCATGY 3 cut(s) 20, 495, 859
BstPAI GACNNNNGTC 2 cut(s) 578, 1118
BstSCI CCNGG 2 cut(s) 666, 1173
BstSFI CTRYAG 1 cut(s) 60
BstV1I GCAGC 3 cut(s) 46, 373, 382
BstV2I GAAGAC 2 cut(s) 821, 1176
BstX2I RGATCY 2 cut(s) 302, 967
BstYI RGATCY 2 cut(s) 302, 967
BstZ17I GTATAC 1 cut(s) 69
Bsu36I CCTNAGG 1 cut(s) 867
BsuRI GGCC 3 cut(s) 671, 974, 1056
BtgI CCRYGG 2 cut(s) 576, 1051
BtsCI GGATG 3 cut(s) 790, 969, 1210
BtsIMutI CAGTG 1 cut(s) 410
Cac8I GCNNGC 3 cut(s) 18, 663, 976
CaiI CAGNNNCTG 1 cut(s) 710
CciI TCATGA 1 cut(s) 522
Cfr13I GGNCC 6 cut(s) 10, 185, 573, 973, 1055, 1113
CseI GACGC 2 cut(s) 100, 940
Csp6I GTAC 4 cut(s) 27, 43, 859, 901
CspCI CAANNNNNGTGG 2 cut(s) 928, 963
CviAII CATG 7 cut(s) 17, 492, 523, 554, 577, 856, 1096
CviQI GTAC 4 cut(s) 27, 43, 859, 901
DdeI CTNAG 6 cut(s) 516, 528, 696, 711, 867, 1129
DpnI GATC 4 cut(s) 304, 756, 864, 969
DpnII GATC 4 cut(s) 302, 754, 862, 967
DraIII CACNNNGTG 1 cut(s) 416
Eam1104I CTCTTC 3 cut(s) 398, 714, 1052
EarI CTCTTC 3 cut(s) 398, 714, 1052
Eco130I CCWWGG 4 cut(s) 306, 576, 690, 1116
Eco47I GGWCC 4 cut(s) 10, 185, 573, 1113
Eco57I CTGAAG 1 cut(s) 525
Eco81I CCTNAGG 1 cut(s) 867
Eco88I CYCGRG 1 cut(s) 766
EcoRII CCWGG 2 cut(s) 666, 1173
EcoT14I CCWWGG 4 cut(s) 306, 576, 690, 1116
ErhI CCWWGG 4 cut(s) 306, 576, 690, 1116
Esp3I CGTCTC 1 cut(s) 118
FaeI CATG 7 cut(s) 20, 495, 526, 557, 580, 859, 1099
FalI AAGNNNNNCTT 4 cut(s) 72, 104, 806, 838
FaqI GGGAC 2 cut(s) 171, 866
FatI CATG 7 cut(s) 16, 491, 522, 553, 576, 855, 1095
FauI CCCGC 1 cut(s) 983
FblI GTMKAC 2 cut(s) 68, 1122
Fnu4HI GCNGC 3 cut(s) 60, 387, 396
FokI GGATG 3 cut(s) 797, 976, 1217
Fsp4HI GCNGC 3 cut(s) 60, 387, 396
GluI GCNGC 3 cut(s) 60, 387, 396
GsuI CTGGAG 2 cut(s) 357, 941
HaeIII GGCC 3 cut(s) 671, 974, 1056
HapII CCGG 1 cut(s) 164
HgaI GACGC 2 cut(s) 100, 940
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 7 cut(s) 20, 495, 526, 557, 580, 859, 1099
HincII GTYRAC 1 cut(s) 1123
HindII GTYRAC 1 cut(s) 1123
HinfI GANTC 8 cut(s) 49, 124, 461, 629, 677, 745, 846, 1156
HpaII CCGG 1 cut(s) 164
HphI GGTGA 3 cut(s) 460, 623, 1042
Hpy166II GTNNAC 3 cut(s) 69, 1113, 1123
Hpy188I TCNGA 3 cut(s) 544, 1132, 1161
Hpy188III TCNNGA 8 cut(s) 115, 128, 139, 196, 523, 571, 752, 866
Hpy8I GTNNAC 3 cut(s) 69, 1113, 1123
HpyAV CCTTC 4 cut(s) 151, 226, 348, 1027
HpyCH4III ACNGT 2 cut(s) 361, 919
HpyCH4IV ACGT 2 cut(s) 214, 219
HpyF10VI GCNNNNNNNGC 5 cut(s) 383, 392, 395, 416, 701
HpyF3I CTNAG 6 cut(s) 516, 528, 696, 711, 867, 1129
HpySE526I ACGT 2 cut(s) 214, 219
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 7 cut(s) 20, 495, 526, 557, 580, 859, 1099
Kzo9I GATC 4 cut(s) 302, 754, 862, 967
LguI GCTCTTC 1 cut(s) 1052
LmnI GCTCC 3 cut(s) 1099, 1147, 1177
Lsp1109I GCAGC 3 cut(s) 46, 373, 382
LweI GCATC 3 cut(s) 307, 987, 1195
MaeII ACGT 2 cut(s) 214, 219
MaeIII GTNAC 4 cut(s) 215, 220, 466, 928
MalI GATC 4 cut(s) 304, 756, 864, 969
MboI GATC 4 cut(s) 302, 754, 862, 967
MboII GAAGA 9 cut(s) 184, 252, 359, 415, 731, 826, 1006, 1039, 1181
MfeI CAATTG 2 cut(s) 264, 390
MflI RGATCY 2 cut(s) 302, 967
MhlI GDGCHC 1 cut(s) 412
MluCI AATT 8 cut(s) 131, 264, 331, 390, 496, 837, 1002, 1070
MlyI GAGTC 3 cut(s) 43, 118, 1165
MseI TTAA 3 cut(s) 330, 618, 840
MslI CAYNNNNRTG 1 cut(s) 485
MspA1I CMGCKG 2 cut(s) 377, 961
MspI CCGG 1 cut(s) 164
MspR9I CCNGG 2 cut(s) 668, 1175
MunI CAATTG 2 cut(s) 264, 390
MvaI CCWGG 2 cut(s) 668, 1175
MwoI GCNNNNNNNGC 5 cut(s) 383, 392, 395, 416, 701
NcoI CCATGG 1 cut(s) 576
NdeII GATC 4 cut(s) 302, 754, 862, 967
NlaIII CATG 7 cut(s) 20, 495, 526, 557, 580, 859, 1099
NlaIV GGNNCC 5 cut(s) 162, 187, 304, 726, 1179
NmuCI GTSAC 2 cut(s) 466, 928
NspI RCATGY 3 cut(s) 20, 495, 859
PaeI GCATGC 1 cut(s) 20
PagI TCATGA 1 cut(s) 522
PciI ACATGT 1 cut(s) 855
PciSI GCTCTTC 1 cut(s) 1052
PfeI GAWTC 5 cut(s) 461, 629, 677, 745, 846
PflMI CCANNNNNTGG 1 cut(s) 964
PkrI GCNGC 3 cut(s) 61, 388, 397
PleI GAGTC 3 cut(s) 43, 118, 1164
PpsI GAGTC 3 cut(s) 43, 118, 1164
PscI ACATGT 1 cut(s) 855
PshAI GACNNNNGTC 2 cut(s) 578, 1118
Psp6I CCWGG 2 cut(s) 666, 1173
PspGI CCWGG 2 cut(s) 666, 1173
PspN4I GGNNCC 5 cut(s) 162, 187, 304, 726, 1179
PspPI GGNCC 6 cut(s) 10, 185, 573, 973, 1055, 1113
PstI CTGCAG 1 cut(s) 64
PstNI CAGNNNCTG 1 cut(s) 710
PsuI RGATCY 2 cut(s) 302, 967
RsaI GTAC 4 cut(s) 28, 44, 860, 902
RsaNI GTAC 4 cut(s) 27, 43, 859, 901
RseI CAYNNNNRTG 1 cut(s) 485
SalI GTCGAC 1 cut(s) 1121
SapI GCTCTTC 1 cut(s) 1052
SaqAI TTAA 3 cut(s) 330, 618, 840
SatI GCNGC 3 cut(s) 60, 387, 396
Sau3AI GATC 4 cut(s) 302, 754, 862, 967
Sau96I GGNCC 6 cut(s) 10, 185, 573, 973, 1055, 1113
SchI GAGTC 3 cut(s) 43, 118, 1165
ScrFI CCNGG 2 cut(s) 668, 1175
SduI GDGCHC 1 cut(s) 412
SfaNI GCATC 3 cut(s) 307, 987, 1195
SfcI CTRYAG 1 cut(s) 60
SinI GGWCC 4 cut(s) 10, 185, 573, 1113
SmiMI CAYNNNNRTG 1 cut(s) 485
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SphI GCATGC 1 cut(s) 20
Sse9I AATT 8 cut(s) 131, 264, 331, 390, 496, 837, 1002, 1070
SsiI CCGC 3 cut(s) 377, 961, 976
StyD4I CCNGG 2 cut(s) 666, 1173
StyI CCWWGG 4 cut(s) 306, 576, 690, 1116
TaaI ACNGT 2 cut(s) 361, 919
TaiI ACGT 2 cut(s) 217, 222
TaqI TCGA 4 cut(s) 116, 195, 282, 1122
TasI AATT 8 cut(s) 131, 264, 331, 390, 496, 837, 1002, 1070
TatI WGTACW 2 cut(s) 26, 900
TfiI GAWTC 5 cut(s) 461, 629, 677, 745, 846
Tru1I TTAA 3 cut(s) 330, 618, 840
Tru9I TTAA 3 cut(s) 330, 618, 840
TscAI CASTG 1 cut(s) 417
TseFI GTSAC 2 cut(s) 466, 928
TseI GCWGC 3 cut(s) 59, 386, 395
Tsp45I GTSAC 2 cut(s) 466, 928
TspDTI ATGAA 4 cut(s) 158, 246, 1094, 1149
TspGWI ACGGA 3 cut(s) 641, 815, 1040
TspRI CASTG 1 cut(s) 417
Van91I CCANNNNNTGG 1 cut(s) 964
VpaK11BI GGWCC 4 cut(s) 10, 185, 573, 1113
XapI RAATTY 2 cut(s) 131, 1070
XceI RCATGY 3 cut(s) 20, 495, 859
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XmiI GTMKAC 2 cut(s) 68, 1122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.