Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000992

Physical Location & Seq

Genomic Coordinates Reverse (-)

42315576 .. 42318198

Gene Structure 2623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG388200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAACCCCATTGGGAAGGTTCCTGTGTTGGAAACGCCAGACGGTCCTGTTTTTGAGAGCAATGCCATTGCGCGATATGTTACTCGTTTGAAGGCGGATAATCCCCTTTATGGTTCTTCCTTGATTGAATATGCCCTTGTGGAGCAATGGATTGATTTTGCAACGTTAGAGATTGATGCCAATATTTTGCGTTGGTTCATACCGCGTATCGGTTTTGCACTCTACCTTCCTCCGGCTGAGGAAGCTGCAATTTCTTCCTTGAAGAGAGCACTAACTGCTTTGAACACTCATCTTGCTTCCAACACGTACTTAGTTGGGCACTATGTGACATTGGCTGATATCATTATGATATGTAATTTAACACTGGGATTTAACCGGTTGTTGACAAAAAATTTTACCTCGGAATTTCCTCATGTTGAGAGATACTTTTGGACATTGGCTAATCAGCCTAATTTTCGCAAGATACTGGGTGAGGTGAAACAAGCTGAATCTGTTCCAGCTGTTCAGTCAGCAAAGAAGCCTTCTCAGCCTAAGGAACCTGCAAAGAAAGAGGCCAAGAAAGAAGTGAAGAAAGAACCGGCAAAGCCTAAAGTAGAAGAGGCTCTTGATCTTTTGCCTCCTAGCAAGATGATTCTGGGTGAATGGAAAAGGCTTTATTCAAACACAAGGACCAACTTCCGTGAGGTTGCTGTCAAAGGTGCTGCACGCTGGGAACACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

240

Amino Acids

27.15

Weight (kDa)

9.26

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	1 - 28	3.7e-07	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	81 - 150	2.6e-10	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09640 AT1G57720 AT1G57720
fragaria_vesca	FvH4_5g28250 FvH4_5g28250 FvH4_5g32590 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560
malus_domestica	MD08G1244100.v1.1 MD15G1403200.v1.1 MD15G1438400.v1.1
prunus_persica	Prupe.1G549300_v2.0.a1 Prupe.1G549300_v2.0.a1 Prupe.1G581500_v2.0.a1 Prupe.1G581500_v2.0.a1
pyrus_communis	pycom08g21180 pycom15g36060 pycom15g38640
rosa_chinensis	RchiOBHm_Chr7g0220411 RchiOBHm_Chr7g0229581 RchiOBHm_Chr7g0229711 RchiOBHm_Chr7g0230101 RchiOBHm_Chr7g0230191
rosa_laevigata	RLG00000001508 RLG00000001510
rosa_multiflora	Rmu_sc0000693.1_g000058 Rmu_sc0000851.1_g000010 Rmu_sc0001621.1_g000005 Rmu_sc0001918.1_g000014 Rmu_sc0002666.1_g000007 Rmu_sc0002822.1_g000020 Rmu_sc0002822.1_g000031 Rmu_sc0004110.1_g000004 Rmu_ssc0000189.1_g000051
rosa_roxburghii	Rroxscaffold_3G00230290 Rroxscaffold_3G00230310 Rroxscaffold_3G00239390
rosa_rugosa	Rorug07G0193900 Rorug07G0259200 Rorug07G0259700 Rorug07G0259900 Rorug07G0260000
rosa_samantha	Rh7AG334900 Rh7AG408700 Rh7AG409300 Rh7AG409800 Rh7BG325900 Rh7BG387800 Rh7BG388100 Rh7BG388200 Rh7BG388600 Rh7CG352600 Rh7CG427700
rosa_wichuraiana	Rw0G018580 Rw0G022570 Rw7G028550 Rw7G033930 Rw7G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	547
AccII	CGCG	2 cut(s)	73, 205
AciI	CCGC	2 cut(s)	95, 203
AclI	AACGTT	1 cut(s)	164
AcsI	RAATTY	2 cut(s)	391, 404
AdeI	CACNNNGTG	1 cut(s)	325
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	3 cut(s)	110, 209, 232
AflIII	ACRYGT	1 cut(s)	303
AgeI	ACCGGT	1 cut(s)	375
AgsI	TTSAA	5 cut(s)	91, 128, 262, 283, 660
AluBI	AGCT	3 cut(s)	245, 485, 500
AluI	AGCT	3 cut(s)	245, 485, 500
Alw21I	GWGCWC	1 cut(s)	271
AoxI	GGCC	1 cut(s)	552
ApeKI	GCWGC	2 cut(s)	245, 701
ApoI	RAATTY	2 cut(s)	391, 404
AsiGI	ACCGGT	1 cut(s)	375
Asp700I	GAANNNNTTC	1 cut(s)	492
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	2 cut(s)	44, 669
AsuHPI	GGTGA	3 cut(s)	482, 487, 650
AvaII	GGWCC	2 cut(s)	44, 669
AxyI	CCTNAGG	1 cut(s)	531
BaeGI	GKGCMC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	271
BbvCI	CCTCAGC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	232, 688
BfaI	CTAG	1 cut(s)	621
BfuAI	ACCTGC	1 cut(s)	547
BisI	GCNGC	2 cut(s)	246, 702
BlsI	GCNGC	2 cut(s)	247, 703
Bme18I	GGWCC	2 cut(s)	44, 669
BmgT120I	GGNCC	2 cut(s)	44, 669
BmiI	GGNNCC	2 cut(s)	21, 537
BmrI	ACTGGG	2 cut(s)	374, 476
BmsI	GCATC	1 cut(s)	166
BmuI	ACTGGG	2 cut(s)	374, 476
Bpu10I	CCTNAGC	1 cut(s)	237
BsaAI	YACGTR	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	399
BsaWI	WCCGGW	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 209, 232
Bse118I	RCCGGY	2 cut(s)	375, 577
Bse1I	ACTGG	2 cut(s)	369, 471
Bse21I	CCTNAGG	1 cut(s)	531
Bse3DI	GCAATG	3 cut(s)	66, 67, 152
BseDI	CCNNGG	1 cut(s)	399
BseLI	CCNNNNNNNGG	3 cut(s)	110, 209, 232
BseMI	GCAATG	3 cut(s)	66, 67, 152
BseMII	CTCAG	2 cut(s)	228, 539
BseNI	ACTGG	2 cut(s)	369, 471
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	2 cut(s)	232, 688
BseYI	CCCAGC	1 cut(s)	708
BsgI	GTGCAG	1 cut(s)	687
Bsh1236I	CGCG	2 cut(s)	73, 205
BshFI	GGCC	1 cut(s)	554
BshTI	ACCGGT	1 cut(s)	375
BsiHKAI	GWGCWC	1 cut(s)	271
BsiSI	CCGG	3 cut(s)	233, 376, 578
BslI	CCNNNNNNNGG	3 cut(s)	110, 209, 232
BsnI	GGCC	1 cut(s)	554
Bsp1286I	GDGCHC	2 cut(s)	271, 321
Bsp143I	GATC	1 cut(s)	607
BspACI	CCGC	2 cut(s)	95, 203
BspANI	GGCC	1 cut(s)	554
BspCNI	CTCAG	2 cut(s)	229, 538
BspFNI	CGCG	2 cut(s)	73, 205
BspLI	GGNNCC	2 cut(s)	21, 537
BspMI	ACCTGC	1 cut(s)	547
BsrDI	GCAATG	3 cut(s)	66, 67, 152
BsrFI	RCCGGY	2 cut(s)	375, 577
BsrI	ACTGG	2 cut(s)	369, 471
BssAI	RCCGGY	2 cut(s)	375, 577
BssECI	CCNNGG	1 cut(s)	399
BssMI	GATC	1 cut(s)	607
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	2 cut(s)	257, 591
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstBAI	YACGTR	1 cut(s)	306
BstC8I	GCNNGC	1 cut(s)	706
BstDEI	CTNAG	4 cut(s)	237, 310, 525, 531
BstFNI	CGCG	2 cut(s)	73, 205
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	1 cut(s)	610
BstMBI	GATC	1 cut(s)	607
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 275, 526
BstSLI	GKGCMC	1 cut(s)	321
BstUI	CGCG	2 cut(s)	73, 205
BstV1I	GCAGC	2 cut(s)	232, 688
Bsu36I	CCTNAGG	1 cut(s)	531
BsuRI	GGCC	1 cut(s)	554
BtsIMutI	CAGTG	1 cut(s)	362
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	1 cut(s)	706
CfoI	GCGC	1 cut(s)	73
Cfr10I	RCCGGY	2 cut(s)	375, 577
Cfr13I	GGNCC	2 cut(s)	44, 669
Csp6I	GTAC	1 cut(s)	307
CspAI	ACCGGT	1 cut(s)	375
CviAII	CATG	1 cut(s)	413
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	4 cut(s)	237, 310, 525, 531
DpnI	GATC	1 cut(s)	609
DpnII	GATC	1 cut(s)	607
DraIII	CACNNNGTG	1 cut(s)	325
Eam1104I	CTCTTC	2 cut(s)	257, 591
EarI	CTCTTC	2 cut(s)	257, 591
EciI	GGCGGA	1 cut(s)	110
Eco32I	GATATC	1 cut(s)	340
Eco47I	GGWCC	2 cut(s)	44, 669
Eco81I	CCTNAGG	1 cut(s)	531
EcoRV	GATATC	1 cut(s)	340
FaeI	CATG	1 cut(s)	416
FaiI	YATR	8 cut(s)	78, 111, 132, 200, 324, 347, 352, 414
FalI	AAGNNNNNCTT	2 cut(s)	588, 620
FatI	CATG	1 cut(s)	412
Fnu4HI	GCNGC	2 cut(s)	246, 702
Fsp4HI	GCNGC	2 cut(s)	246, 702
FspBI	CTAG	1 cut(s)	621
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	2 cut(s)	246, 702
GsaI	CCCAGC	1 cut(s)	712
HaeIII	GGCC	1 cut(s)	554
HapII	CCGG	3 cut(s)	233, 376, 578
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	1 cut(s)	416
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HincII	GTYRAC	1 cut(s)	384
HindII	GTYRAC	1 cut(s)	384
HinfI	GANTC	2 cut(s)	488, 631
HpaII	CCGG	3 cut(s)	233, 376, 578
HphI	GGTGA	3 cut(s)	482, 487, 650
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188I	TCNGA	1 cut(s)	403
Hpy188III	TCNNGA	1 cut(s)	605
Hpy8I	GTNNAC	1 cut(s)	384
HpyAV	CCTTC	4 cut(s)	10, 85, 236, 531
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	2 cut(s)	164, 305
HpyCH4V	TGCA	5 cut(s)	161, 218, 248, 542, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 275, 526
HpyF3I	CTNAG	4 cut(s)	237, 310, 525, 531
HpySE526I	ACGT	2 cut(s)	164, 305
Hsp92II	CATG	1 cut(s)	416
HspAI	GCGC	1 cut(s)	71
Kzo9I	GATC	1 cut(s)	607
LmnI	GCTCC	1 cut(s)	142
Lsp1109I	GCAGC	2 cut(s)	232, 688
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	621
MaeII	ACGT	2 cut(s)	164, 305
MaeIII	GTNAC	2 cut(s)	79, 325
MalI	GATC	1 cut(s)	609
MboI	GATC	1 cut(s)	607
MboII	GAAGA	5 cut(s)	108, 246, 274, 580, 608
MhlI	GDGCHC	2 cut(s)	271, 321
MluCI	AATT	5 cut(s)	249, 355, 391, 404, 451
MmeI	TCCRAC	2 cut(s)	9, 324
MnlI	CCTC	9 cut(s)	232, 240, 409, 420, 466, 544, 592, 627, 676
MroXI	GAANNNNTTC	1 cut(s)	492
MseI	TTAA	2 cut(s)	359, 372
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	3 cut(s)	233, 376, 578
MvnI	CGCG	2 cut(s)	73, 205
MwoI	GCNNNNNNNGC	3 cut(s)	242, 275, 526
NdeII	GATC	1 cut(s)	607
NlaIII	CATG	1 cut(s)	416
NlaIV	GGNNCC	2 cut(s)	21, 537
NmuCI	GTSAC	1 cut(s)	325
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	2 cut(s)	488, 631
PinAI	ACCGGT	1 cut(s)	375
PkrI	GCNGC	2 cut(s)	247, 703
Ppu21I	YACGTR	1 cut(s)	306
Psp1406I	AACGTT	1 cut(s)	164
PspFI	CCCAGC	1 cut(s)	708
PspN4I	GGNNCC	2 cut(s)	21, 537
PspPI	GGNCC	2 cut(s)	44, 669
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
SaqAI	TTAA	2 cut(s)	359, 372
SatI	GCNGC	2 cut(s)	246, 702
Sau3AI	GATC	1 cut(s)	607
Sau96I	GGNCC	2 cut(s)	44, 669
SduI	GDGCHC	2 cut(s)	271, 321
SfaNI	GCATC	1 cut(s)	166
SinI	GGWCC	2 cut(s)	44, 669
Sse9I	AATT	5 cut(s)	249, 355, 391, 404, 451
SsiI	CCGC	2 cut(s)	95, 203
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	1 cut(s)	621
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	2 cut(s)	167, 308
TasI	AATT	5 cut(s)	249, 355, 391, 404, 451
TfiI	GAWTC	2 cut(s)	488, 631
Tru1I	TTAA	2 cut(s)	359, 372
Tru9I	TTAA	2 cut(s)	359, 372
TscAI	CASTG	1 cut(s)	369
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	2 cut(s)	245, 701
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	2 cut(s)	17, 187
TspGWI	ACGGA	1 cut(s)	668
TspRI	CASTG	1 cut(s)	369
VpaK11BI	GGWCC	2 cut(s)	44, 669
XapI	RAATTY	2 cut(s)	391, 404
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.