Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000992

Physical Location & Seq

Genomic Coordinates Forward (+)

16606866 .. 16608741

Gene Structure 1876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001508

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGGTTATGCTGTTTACCTTCCTCTGGATGAGGAAGCGGCAATTTCTTCCTTGAAGAGAGCACTAACTGCTTTGAACATTCATCTTGCTTCCAACACGTACCTGGTTGGGCATTCTCTCACGTTGGCTGATATCATTATGACATGTAATCTGAAGCCGGGATTTAGTCGGTTATTAACAAAAAGTTTTACATCTGAATTTCCTCATGTTGAGAGATACTTTTGGACATTGGTTAATCTTCCTAATTTTTGCAAGATATTGGGGGAGGTGAAACAAGCAGAATCTATTCCAGCTGTTCAGTTAGTGATGAAGCCTTCACAGCCTAAGGAATCTGCAGAAACAAAGGTCAAGGTTCAGACGAATAAAGAGGCCAAGAAAGAACCAACAGAACCTAAAGTAGAAGAGTCTGCTCAGGAAGAGGAGGCACCCAAGACCAAGGCAAAGAATCCTCTTGATCTTTTGCCTCCTAGCAAGATGATACTGGATGAATGGAAAAGACTTTATTCAAACACAAAGACCAACTTCCGTGAGGTTGCTGTTAGAGGATTCTGGGAAATGTATGATCCCAAAGGTTACTCTCTTTGGTTCTGCGAGTACAAGTACAATGATGAAAATACTGTTTCATTCGTGACTCTGAATAAGGTGCGCTACAGAGAATGGATTTGGCTCGTAAGTATGCTTTTGGGAAGATGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

233

Amino Acids

26.82

Weight (kDa)

8.52

Isoelectric Point (pI)

35.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_C	PF00043	16 - 81	7.3e-09	Glutathione S-transferase, C-terminal domain
EF1G	PF00647	146 - 215	1.9e-23	Elongation factor 1 gamma, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09640 AT1G57720 AT1G57720
fragaria_vesca	FvH4_5g28250 FvH4_5g28250 FvH4_5g32590 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560
malus_domestica	MD08G1244100.v1.1 MD15G1403200.v1.1 MD15G1438400.v1.1
prunus_persica	Prupe.1G549300_v2.0.a1 Prupe.1G549300_v2.0.a1 Prupe.1G581500_v2.0.a1 Prupe.1G581500_v2.0.a1
pyrus_communis	pycom08g21180 pycom15g36060 pycom15g38640
rosa_chinensis	RchiOBHm_Chr7g0220411 RchiOBHm_Chr7g0229581 RchiOBHm_Chr7g0229711 RchiOBHm_Chr7g0230101 RchiOBHm_Chr7g0230191
rosa_laevigata	RLG00000001508 RLG00000001510
rosa_multiflora	Rmu_sc0000693.1_g000058 Rmu_sc0000851.1_g000010 Rmu_sc0001621.1_g000005 Rmu_sc0001918.1_g000014 Rmu_sc0002666.1_g000007 Rmu_sc0002822.1_g000020 Rmu_sc0002822.1_g000031 Rmu_sc0004110.1_g000004 Rmu_ssc0000189.1_g000051
rosa_roxburghii	Rroxscaffold_3G00230290 Rroxscaffold_3G00230310 Rroxscaffold_3G00239390
rosa_rugosa	Rorug07G0193900 Rorug07G0259200 Rorug07G0259700 Rorug07G0259900 Rorug07G0260000
rosa_samantha	Rh7AG334900 Rh7AG408700 Rh7AG409300 Rh7AG409800 Rh7BG325900 Rh7BG387800 Rh7BG388100 Rh7BG388200 Rh7BG388600 Rh7CG352600 Rh7CG427700
rosa_wichuraiana	Rw0G018580 Rw0G022570 Rw7G028550 Rw7G033930 Rw7G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	424
AciI	CCGC	1 cut(s)	38
AclWI	GGATC	1 cut(s)	557
AcsI	RAATTY	1 cut(s)	197
AcuI	CTGAAG	1 cut(s)	173
AfaI	GTAC	3 cut(s)	101, 596, 602
AfiI	CCNNNNNNNGG	1 cut(s)	25
AflIII	ACRYGT	2 cut(s)	96, 143
AgsI	TTSAA	3 cut(s)	55, 76, 507
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	1 cut(s)	293
AluI	AGCT	1 cut(s)	293
Alw21I	GWGCWC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	557
AoxI	GGCC	1 cut(s)	369
ApoI	RAATTY	1 cut(s)	197
Asp700I	GAANNNNTTC	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	648
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	280
AxyI	CCTNAGG	1 cut(s)	324
BanI	GGYRCC	1 cut(s)	424
Bbv12I	GWGCWC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	104
BcnI	CCSGG	1 cut(s)	159
BfaI	CTAG	1 cut(s)	468
BfmI	CTRYAG	2 cut(s)	333, 649
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
Bme1390I	CCNGG	2 cut(s)	104, 159
BmiI	GGNNCC	1 cut(s)	426
BmrFI	CCNGG	2 cut(s)	104, 159
Bpu10I	CCTNAGC	1 cut(s)	411
BpuMI	CCSGG	1 cut(s)	159
BsaAI	YACGTR	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	486
Bse21I	CCTNAGG	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	435
BseGI	GGATG	2 cut(s)	34, 490
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	425
BseNI	ACTGG	1 cut(s)	486
BseRI	GAGGAG	1 cut(s)	434
BshFI	GGCC	1 cut(s)	371
BshNI	GGYRCC	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	64
BsiSI	CCGG	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	371
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	454, 562
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	1 cut(s)	371
BspCNI	CTCAG	1 cut(s)	424
BspLI	GGNNCC	1 cut(s)	426
BspMAI	CTGCAG	1 cut(s)	337
BspPI	GGATC	1 cut(s)	557
BspT107I	GGYRCC	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	486
BssECI	CCNNGG	1 cut(s)	435
BssMI	GATC	2 cut(s)	454, 562
BssT1I	CCWWGG	1 cut(s)	435
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	619
Bst6I	CTCTTC	3 cut(s)	50, 396, 411
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstBAI	YACGTR	1 cut(s)	99
BstDEI	CTNAG	2 cut(s)	324, 411
BstF5I	GGATG	2 cut(s)	34, 490
BstHHI	GCGC	1 cut(s)	648
BstKTI	GATC	2 cut(s)	457, 565
BstMBI	GATC	2 cut(s)	454, 562
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 319
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	1 cut(s)	147
BstSCI	CCNGG	2 cut(s)	102, 157
BstSFI	CTRYAG	2 cut(s)	333, 649
Bsu36I	CCTNAGG	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	371
BtsCI	GGATG	2 cut(s)	34, 490
CfoI	GCGC	1 cut(s)	648
CsiI	ACCWGGT	1 cut(s)	102
Csp6I	GTAC	3 cut(s)	100, 595, 601
CviAII	CATG	2 cut(s)	144, 206
CviJI	RGCY	7 cut(s)	128, 157, 293, 313, 322, 371, 667
CviKI_1	RGCY	7 cut(s)	128, 157, 293, 313, 322, 371, 667
CviQI	GTAC	3 cut(s)	100, 595, 601
DdeI	CTNAG	2 cut(s)	324, 411
DpnI	GATC	2 cut(s)	456, 564
DpnII	GATC	2 cut(s)	454, 562
Eam1104I	CTCTTC	3 cut(s)	50, 396, 411
EarI	CTCTTC	3 cut(s)	50, 396, 411
Eco130I	CCWWGG	1 cut(s)	435
Eco32I	GATATC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	173
Eco81I	CCTNAGG	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	102
EcoRV	GATATC	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	435
FaeI	CATG	2 cut(s)	147, 209
FaiI	YATR	6 cut(s)	9, 140, 145, 207, 561, 677
FalI	AAGNNNNNCTT	2 cut(s)	506, 538
FatI	CATG	2 cut(s)	143, 205
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	2 cut(s)	41, 497
Fsp4HI	GCNGC	1 cut(s)	39
FspBI	CTAG	1 cut(s)	468
GlaI	GCGC	1 cut(s)	647
GluI	GCNGC	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	371
HapII	CCGG	1 cut(s)	158
HhaI	GCGC	1 cut(s)	648
Hin1II	CATG	2 cut(s)	147, 209
Hin6I	GCGC	1 cut(s)	646
HinP1I	GCGC	1 cut(s)	646
HinfI	GANTC	6 cut(s)	281, 329, 404, 445, 546, 631
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	4 cut(s)	153, 196, 357, 636
Hpy188III	TCNNGA	4 cut(s)	26, 413, 452, 628
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	29, 324
HpyCH4III	ACNGT	1 cut(s)	619
HpyCH4IV	ACGT	2 cut(s)	98, 122
HpyCH4V	TGCA	2 cut(s)	252, 335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 319
HpyF3I	CTNAG	2 cut(s)	324, 411
HpySE526I	ACGT	2 cut(s)	98, 122
Hsp92II	CATG	2 cut(s)	147, 209
HspAI	GCGC	1 cut(s)	646
Kzo9I	GATC	2 cut(s)	454, 562
LpnPI	CCDG	8 cut(s)	11, 89, 116, 171, 303, 398, 467, 535
MabI	ACCWGGT	1 cut(s)	102
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	2 cut(s)	98, 122
MaeIII	GTNAC	2 cut(s)	572, 628
MalI	GATC	2 cut(s)	456, 564
MboI	GATC	2 cut(s)	454, 562
MboII	GAAGA	6 cut(s)	39, 67, 230, 413, 428, 699
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	3 cut(s)	42, 197, 244
MlyI	GAGTC	2 cut(s)	413, 625
MmeI	TCCRAC	1 cut(s)	117
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	2 cut(s)	176, 234
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	104, 159
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	2 cut(s)	68, 319
NciI	CCSGG	1 cut(s)	159
NdeII	GATC	2 cut(s)	454, 562
NlaIII	CATG	2 cut(s)	147, 209
NlaIV	GGNNCC	1 cut(s)	426
NmuCI	GTSAC	1 cut(s)	628
NspI	RCATGY	1 cut(s)	147
PciI	ACATGT	1 cut(s)	143
PctI	GAATGC	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	4 cut(s)	281, 329, 445, 546
PkrI	GCNGC	1 cut(s)	40
PleI	GAGTC	2 cut(s)	412, 625
PpsI	GAGTC	2 cut(s)	412, 625
Ppu21I	YACGTR	1 cut(s)	99
PscI	ACATGT	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	426
PstI	CTGCAG	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	3 cut(s)	101, 596, 602
RsaNI	GTAC	3 cut(s)	100, 595, 601
SaqAI	TTAA	2 cut(s)	176, 234
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	2 cut(s)	454, 562
SchI	GAGTC	2 cut(s)	413, 625
ScrFI	CCNGG	2 cut(s)	104, 159
SduI	GDGCHC	1 cut(s)	64
SexAI	ACCWGGT	1 cut(s)	102
SfcI	CTRYAG	2 cut(s)	333, 649
Sse9I	AATT	3 cut(s)	42, 197, 244
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	468
StyD4I	CCNGG	2 cut(s)	102, 157
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	1 cut(s)	619
TaiI	ACGT	2 cut(s)	101, 125
TasI	AATT	3 cut(s)	42, 197, 244
TatI	WGTACW	2 cut(s)	594, 600
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	4 cut(s)	281, 329, 445, 546
Tru1I	TTAA	2 cut(s)	176, 234
Tru9I	TTAA	2 cut(s)	176, 234
TseFI	GTSAC	1 cut(s)	628
Tsp45I	GTSAC	1 cut(s)	628
TspDTI	ATGAA	5 cut(s)	71, 323, 501, 612, 624
TspGWI	ACGGA	1 cut(s)	515
XapI	RAATTY	1 cut(s)	197
XceI	RCATGY	1 cut(s)	147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.