Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000992

Physical Location & Seq

Genomic Coordinates Reverse (-)

21159296 .. 21163130

Gene Structure 3835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g28560.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCTCTGGTCTTGCATGCAGGGAGCACGAACAAAAATGCATACAAGACTCTCATTGCTGCTGGGTATACAGGTGTCCAAGTTGCACTTGCACCCAACTTTGAGATGGGCGTCTCCAACAAGACTCCTGAATTTCTCAAGATGAACCCCATTGGGAAGGTTCCTGTGCTGGAGACACCTGATGGACCCATCTTCGAGAGTAATGCCATTGCACGTTACGTTACTCGCTTGCAGGCTGACAATCCTCTTTATGGTTCATCTTCAATTGACTATGCCCATATCGAGCAATGGATTGATTTTGGATCCTTGGAGATTGATGCTAACCTTGGTAATTGGCTTAGACCAAGAATGGGAAGGGGTGTCTATCTTCCTCCAGCGGAAGAAGCTGCAATTGCTGCATTGAAGAGAGCACTGGGTGCATTGAACACATATCTTGCTTCTAGCACATACCTTGTTGGGCATTCTGTCACTCTTGCCGACATTGTTATGACATGCAATTTGTTTATGGGCTTCACCAGACTCATGACTAAGAGCTTCACTTCAGAGTTTCCTCATGTTGAGAGATACTTCTGGACAATGGTCAATCAACCAAACTTCAAAAAGGTATTGGGTGAGGTCAAGCAGACAGATTCTGTGCCTGCTGTTCAATCTGCAAAGAAGCCTGCCCCTGCCAAAGAATCTGCTAAACCCAAGGCTAAGGAGGAGCCAAAGAAAGAAGCCAAGGAGCTGGCAAAGCCAAAAGCAGAAGCTGAGGAGGAAGAGGCACCAAAGCCAAAACCCAAGAATGCTCTTGATCTGCTTCCTCCAAGTAAGATGATATTGGATGACTGGAAAAGGCTTTACTCTAACACGAAGACCAACTTCCGTGAGGTGGCAATTAAAGGATTCTGGGACATCGGATGGATCTGGCCCGCAAGTATGCTTTCGGGAAGATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

313

Amino Acids

34.55

Weight (kDa)

9.06

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	8 - 75	2.2e-13	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	15 - 75	1.6e-07	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	16 - 81	7.2e-07	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	128 - 197	1.6e-11	Glutathione S-transferase, C-terminal domain
GST_C_3	PF14497	132 - 201	4e-06	Glutathione S-transferase, C-terminal domain
EF1G	PF00647	259 - 366	2e-40	Elongation factor 1 gamma, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09640 AT1G57720 AT1G57720
fragaria_vesca	FvH4_5g28250 FvH4_5g28250 FvH4_5g32590 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560
malus_domestica	MD08G1244100.v1.1 MD15G1403200.v1.1 MD15G1438400.v1.1
prunus_persica	Prupe.1G549300_v2.0.a1 Prupe.1G549300_v2.0.a1 Prupe.1G581500_v2.0.a1 Prupe.1G581500_v2.0.a1
pyrus_communis	pycom08g21180 pycom15g36060 pycom15g38640
rosa_chinensis	RchiOBHm_Chr7g0220411 RchiOBHm_Chr7g0229581 RchiOBHm_Chr7g0229711 RchiOBHm_Chr7g0230101 RchiOBHm_Chr7g0230191
rosa_laevigata	RLG00000001508 RLG00000001510
rosa_multiflora	Rmu_sc0000693.1_g000058 Rmu_sc0000851.1_g000010 Rmu_sc0001621.1_g000005 Rmu_sc0001918.1_g000014 Rmu_sc0002666.1_g000007 Rmu_sc0002822.1_g000020 Rmu_sc0002822.1_g000031 Rmu_sc0004110.1_g000004 Rmu_ssc0000189.1_g000051
rosa_roxburghii	Rroxscaffold_3G00230290 Rroxscaffold_3G00230310 Rroxscaffold_3G00239390
rosa_rugosa	Rorug07G0193900 Rorug07G0259200 Rorug07G0259700 Rorug07G0259900 Rorug07G0260000
rosa_samantha	Rh7AG334900 Rh7AG408700 Rh7AG409300 Rh7AG409800 Rh7BG325900 Rh7BG387800 Rh7BG388100 Rh7BG388200 Rh7BG388600 Rh7CG352600 Rh7CG427700
rosa_wichuraiana	Rw0G018580 Rw0G022570 Rw7G028550 Rw7G033930 Rw7G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	763
AccI	GTMKAC	1 cut(s)	68
AciI	CCGC	2 cut(s)	377, 912
AclWI	GGATC	3 cut(s)	297, 310, 911
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	525
AcyI	GRCGYC	1 cut(s)	111
AdeI	CACNNNGTG	1 cut(s)	416
AfiI	CCNNNNNNNGG	3 cut(s)	251, 350, 871
AgsI	TTSAA	5 cut(s)	264, 403, 424, 598, 647
AluBI	AGCT	4 cut(s)	386, 534, 727, 749
AluI	AGCT	4 cut(s)	386, 534, 727, 749
Alw21I	GWGCWC	2 cut(s)	29, 412
Alw26I	GTCTC	2 cut(s)	118, 167
AlwI	GGATC	3 cut(s)	297, 310, 911
AlwNI	CAGNNNCTG	2 cut(s)	632, 749
AoxI	GGCC	1 cut(s)	908
ApeKI	GCWGC	3 cut(s)	59, 386, 395
ApoI	RAATTY	1 cut(s)	131
ArsI	GACNNNNNNTTYG	2 cut(s)	481, 513
AspS9I	GGNCC	2 cut(s)	185, 909
AsuHPI	GGTGA	2 cut(s)	505, 623
AvaII	GGWCC	1 cut(s)	185
BamHI	GGATCC	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	763
BbsI	GAAGAC	1 cut(s)	860
Bbv12I	GWGCWC	2 cut(s)	29, 412
BbvCI	CCTCAGC	1 cut(s)	750
BbvI	GCAGC	3 cut(s)	46, 373, 382
BccI	CCATC	4 cut(s)	100, 176, 197, 894
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BcoDI	GTCTC	2 cut(s)	118, 167
BfaI	CTAG	1 cut(s)	441
BisI	GCNGC	3 cut(s)	60, 387, 396
BlsI	GCNGC	3 cut(s)	61, 388, 397
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	2 cut(s)	185, 909
BmiI	GGNNCC	5 cut(s)	162, 187, 304, 705, 765
BmrI	ACTGGG	1 cut(s)	422
BmsI	GCATC	2 cut(s)	307, 923
BmuI	ACTGGG	1 cut(s)	422
BoxI	GACNNNNGTC	1 cut(s)	578
BpiI	GAAGAC	1 cut(s)	860
BpmI	CTGGAG	2 cut(s)	191, 357
Bpu10I	CCTNAGC	2 cut(s)	696, 750
BpuEI	CTTGAG	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	4 cut(s)	306, 325, 690, 720
Bsc4I	CCNNNNNNNGG	3 cut(s)	251, 350, 871
Bse1I	ACTGG	2 cut(s)	417, 833
Bse3DI	GCAATG	3 cut(s)	54, 207, 293
BseDI	CCNNGG	4 cut(s)	306, 325, 690, 720
BseGI	GGATG	2 cut(s)	829, 905
BseLI	CCNNNNNNNGG	3 cut(s)	251, 350, 871
BseMI	GCAATG	3 cut(s)	54, 207, 293
BseMII	CTCAG	1 cut(s)	741
BseNI	ACTGG	2 cut(s)	417, 833
BseRI	GAGGAG	2 cut(s)	716, 767
BseXI	GCAGC	3 cut(s)	46, 373, 382
BseYI	CCCAGC	1 cut(s)	62
BshFI	GGCC	1 cut(s)	910
BshNI	GGYRCC	1 cut(s)	763
BsiHKAI	GWGCWC	2 cut(s)	29, 412
BslFI	GGGAC	1 cut(s)	905
BslI	CCNNNNNNNGG	3 cut(s)	251, 350, 871
BsmAI	GTCTC	2 cut(s)	118, 167
BsmBI	CGTCTC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	905
BsmI	GAATGC	2 cut(s)	460, 790
BsnI	GGCC	1 cut(s)	910
Bsp1286I	GDGCHC	2 cut(s)	29, 412
Bsp143I	GATC	3 cut(s)	302, 793, 903
BspACI	CCGC	2 cut(s)	377, 912
BspANI	GGCC	1 cut(s)	910
BspCNI	CTCAG	1 cut(s)	742
BspHI	TCATGA	1 cut(s)	522
BspLI	GGNNCC	5 cut(s)	162, 187, 304, 705, 765
BspPI	GGATC	3 cut(s)	297, 310, 911
BspT107I	GGYRCC	1 cut(s)	763
BsrDI	GCAATG	3 cut(s)	54, 207, 293
BsrI	ACTGG	2 cut(s)	417, 833
BssECI	CCNNGG	4 cut(s)	306, 325, 690, 720
BssMI	GATC	3 cut(s)	302, 793, 903
BssNAI	GTATAC	1 cut(s)	69
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	4 cut(s)	306, 325, 690, 720
Bst1107I	GTATAC	1 cut(s)	69
Bst6I	CTCTTC	2 cut(s)	398, 753
BstACI	GRCGYC	1 cut(s)	111
BstAPI	GCANNNNNTGC	2 cut(s)	395, 416
BstC8I	GCNNGC	7 cut(s)	18, 230, 234, 639, 663, 729, 912
BstDEI	CTNAG	4 cut(s)	338, 528, 696, 750
BstF5I	GGATG	2 cut(s)	829, 905
BstKTI	GATC	3 cut(s)	305, 796, 906
BstMAI	GTCTC	2 cut(s)	118, 167
BstMBI	GATC	3 cut(s)	302, 793, 903
BstMWI	GCNNNNNNNGC	5 cut(s)	383, 392, 395, 416, 733
BstNSI	RCATGY	2 cut(s)	20, 495
BstPAI	GACNNNNGTC	1 cut(s)	578
BstV1I	GCAGC	3 cut(s)	46, 373, 382
BstV2I	GAAGAC	1 cut(s)	860
BstX2I	RGATCY	2 cut(s)	302, 903
BstXI	CCANNNNNNTGG	1 cut(s)	727
BstYI	RGATCY	2 cut(s)	302, 903
BstZ17I	GTATAC	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	910
BtsCI	GGATG	2 cut(s)	829, 905
BtsIMutI	CAGTG	1 cut(s)	410
Cac8I	GCNNGC	7 cut(s)	18, 230, 234, 639, 663, 729, 912
CaiI	CAGNNNCTG	2 cut(s)	632, 749
CciI	TCATGA	1 cut(s)	522
Cfr13I	GGNCC	2 cut(s)	185, 909
CseI	GACGC	1 cut(s)	100
CviAII	CATG	4 cut(s)	17, 492, 523, 554
DdeI	CTNAG	4 cut(s)	338, 528, 696, 750
DpnI	GATC	3 cut(s)	304, 795, 905
DpnII	GATC	3 cut(s)	302, 793, 903
DraIII	CACNNNGTG	1 cut(s)	416
Eam1104I	CTCTTC	2 cut(s)	398, 753
EarI	CTCTTC	2 cut(s)	398, 753
Eco130I	CCWWGG	4 cut(s)	306, 325, 690, 720
Eco47I	GGWCC	1 cut(s)	185
Eco57I	CTGAAG	1 cut(s)	525
EcoT14I	CCWWGG	4 cut(s)	306, 325, 690, 720
EcoT22I	ATGCAT	1 cut(s)	43
ErhI	CCWWGG	4 cut(s)	306, 325, 690, 720
Esp3I	CGTCTC	1 cut(s)	118
FaeI	CATG	4 cut(s)	20, 495, 526, 557
FalI	AAGNNNNNCTT	4 cut(s)	72, 104, 845, 877
FaqI	GGGAC	1 cut(s)	905
FatI	CATG	4 cut(s)	16, 491, 522, 553
FauI	CCCGC	1 cut(s)	919
FblI	GTMKAC	1 cut(s)	68
Fnu4HI	GCNGC	3 cut(s)	60, 387, 396
FokI	GGATG	2 cut(s)	836, 912
Fsp4HI	GCNGC	3 cut(s)	60, 387, 396
FspBI	CTAG	1 cut(s)	441
GluI	GCNGC	3 cut(s)	60, 387, 396
GsaI	CCCAGC	1 cut(s)	66
GsuI	CTGGAG	2 cut(s)	191, 357
HaeIII	GGCC	1 cut(s)	910
HgaI	GACGC	1 cut(s)	100
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	4 cut(s)	20, 495, 526, 557
HinfI	GANTC	6 cut(s)	49, 124, 519, 629, 677, 885
HphI	GGTGA	2 cut(s)	505, 623
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	2 cut(s)	544, 899
Hpy188III	TCNNGA	7 cut(s)	128, 139, 196, 523, 571, 791, 927
Hpy8I	GTNNAC	1 cut(s)	69
HpyAV	CCTTC	2 cut(s)	151, 348
HpyCH4IV	ACGT	2 cut(s)	214, 219
HpyF10VI	GCNNNNNNNGC	5 cut(s)	383, 392, 395, 416, 733
HpyF3I	CTNAG	4 cut(s)	338, 528, 696, 750
HpySE526I	ACGT	2 cut(s)	214, 219
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	4 cut(s)	20, 495, 526, 557
Kzo9I	GATC	3 cut(s)	302, 793, 903
LmnI	GCTCC	3 cut(s)	24, 703, 724
Lsp1109I	GCAGC	3 cut(s)	46, 373, 382
LweI	GCATC	2 cut(s)	307, 923
MaeI	CTAG	1 cut(s)	441
MaeII	ACGT	2 cut(s)	214, 219
MaeIII	GTNAC	3 cut(s)	215, 220, 466
MalI	GATC	3 cut(s)	304, 795, 905
MboI	GATC	3 cut(s)	302, 793, 903
MboII	GAAGA	7 cut(s)	184, 252, 359, 392, 415, 770, 865
MfeI	CAATTG	2 cut(s)	264, 390
MflI	RGATCY	2 cut(s)	302, 903
MhlI	GDGCHC	2 cut(s)	29, 412
MluCI	AATT	6 cut(s)	131, 264, 331, 390, 496, 876
MlyI	GAGTC	3 cut(s)	43, 118, 513
MmeI	TCCRAC	1 cut(s)	141
Mph1103I	ATGCAT	1 cut(s)	43
MseI	TTAA	1 cut(s)	879
MslI	CAYNNNNRTG	1 cut(s)	485
MspA1I	CMGCKG	1 cut(s)	377
MunI	CAATTG	2 cut(s)	264, 390
Mva1269I	GAATGC	2 cut(s)	460, 790
MwoI	GCNNNNNNNGC	5 cut(s)	383, 392, 395, 416, 733
NdeII	GATC	3 cut(s)	302, 793, 903
NlaIII	CATG	4 cut(s)	20, 495, 526, 557
NlaIV	GGNNCC	5 cut(s)	162, 187, 304, 705, 765
NmuCI	GTSAC	1 cut(s)	466
NsiI	ATGCAT	1 cut(s)	43
NspI	RCATGY	2 cut(s)	20, 495
PaeI	GCATGC	1 cut(s)	20
PagI	TCATGA	1 cut(s)	522
PctI	GAATGC	2 cut(s)	460, 790
PfeI	GAWTC	3 cut(s)	629, 677, 885
PkrI	GCNGC	3 cut(s)	61, 388, 397
PleI	GAGTC	3 cut(s)	43, 118, 513
PpsI	GAGTC	3 cut(s)	43, 118, 513
PshAI	GACNNNNGTC	1 cut(s)	578
PspFI	CCCAGC	1 cut(s)	62
PspN4I	GGNNCC	5 cut(s)	162, 187, 304, 705, 765
PspPI	GGNCC	2 cut(s)	185, 909
PstNI	CAGNNNCTG	2 cut(s)	632, 749
PsuI	RGATCY	2 cut(s)	302, 903
RseI	CAYNNNNRTG	1 cut(s)	485
SaqAI	TTAA	1 cut(s)	879
SatI	GCNGC	3 cut(s)	60, 387, 396
Sau3AI	GATC	3 cut(s)	302, 793, 903
Sau96I	GGNCC	2 cut(s)	185, 909
SchI	GAGTC	3 cut(s)	43, 118, 513
SduI	GDGCHC	2 cut(s)	29, 412
SfaNI	GCATC	2 cut(s)	307, 923
SinI	GGWCC	1 cut(s)	185
SmiMI	CAYNNNNRTG	1 cut(s)	485
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SphI	GCATGC	1 cut(s)	20
Sse9I	AATT	6 cut(s)	131, 264, 331, 390, 496, 876
SsiI	CCGC	2 cut(s)	377, 912
SspMI	CTAG	1 cut(s)	441
StyI	CCWWGG	4 cut(s)	306, 325, 690, 720
TaiI	ACGT	2 cut(s)	217, 222
TaqI	TCGA	2 cut(s)	195, 282
TasI	AATT	6 cut(s)	131, 264, 331, 390, 496, 876
TfiI	GAWTC	3 cut(s)	629, 677, 885
Tru1I	TTAA	1 cut(s)	879
Tru9I	TTAA	1 cut(s)	879
TscAI	CASTG	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	3 cut(s)	59, 386, 395
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	2 cut(s)	158, 246
TspGWI	ACGGA	1 cut(s)	854
TspRI	CASTG	1 cut(s)	417
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	1 cut(s)	131
XceI	RCATGY	2 cut(s)	20, 495
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XmiI	GTMKAC	1 cut(s)	68
XspI	CTAG	1 cut(s)	441
Zsp2I	ATGCAT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.