Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000992

Physical Location & Seq

Genomic Coordinates Reverse (-)

53577427 .. 53581099

Gene Structure 3673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20616

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGTGTCGAACAAGACTCCCCAGTTTCTCAAAATGAACCCCATTGGGAAGGTGGGAGTTATGTCTTTTGCAGGTCCTGTGTTGGAAACGCCAGACGGTCCTGTTTTTGAGAGTAATGCCATTGCGCGATATGTTACTCGTTTGAAGGCCGATAATCCCCTTTATGGTTCTTCCTTGATTGAATATGCCCTTGTGGAGCAATGGATTGATTTTGCAACGTTAGAGATTGATGCCAATATTTTGCGTTGGTTCATACCGCGTGTCGGTTTTGCAGTCTACCTTCCTCCGGCTGAGGAAGCTGCAATTTCTTCCTTGAAGAGAGCACTGACTGCTTTGAACACTCATCTTGCTTCCAACACGTACTTAGTTGGGCACTCTGTGACATTGGCTGATATCATTATGATACTGGGTGAGGTGAAACAAGCTGAATCTGTTCCAGCTGTTCAGTCAAAGAAGCCTTCACAGCCCAAGGAACCTGCAAAGAAAGAGGCCAAGAAGGAAGTGAAGAAAGAACCAGCAAAGCCTAAAGTAGAAGAGGCTGCTCAGGAAGAGGAGGCACCCAGGCCCAAGGCAAAGAATCCTCTTGATCTTTTGCCTCCTAGCAAGATGATTCTGGATGAATGGAAAAGGCTTTATTCAAACACAAAGACCAACTTCCGTGAGGTTGCTGTCAAAGGTGATTCCTTATTGACTCTGTTTATTCATGCATTCAAGCAGATCTTGTTTTTAATTTATCACAAACCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

249

Amino Acids

27.75

Weight (kDa)

9.15

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	4 - 46	3.3e-06	Glutathione S-transferase, N-terminal domain
EF1G	PF00647	190 - 218	5.7e-07	Elongation factor 1 gamma, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09640 AT1G57720 AT1G57720
fragaria_vesca	FvH4_5g28250 FvH4_5g28250 FvH4_5g32590 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560
malus_domestica	MD08G1244100.v1.1 MD15G1403200.v1.1 MD15G1438400.v1.1
prunus_persica	Prupe.1G549300_v2.0.a1 Prupe.1G549300_v2.0.a1 Prupe.1G581500_v2.0.a1 Prupe.1G581500_v2.0.a1
pyrus_communis	pycom08g21180 pycom15g36060 pycom15g38640
rosa_chinensis	RchiOBHm_Chr7g0220411 RchiOBHm_Chr7g0229581 RchiOBHm_Chr7g0229711 RchiOBHm_Chr7g0230101 RchiOBHm_Chr7g0230191
rosa_laevigata	RLG00000001508 RLG00000001510
rosa_multiflora	Rmu_sc0000693.1_g000058 Rmu_sc0000851.1_g000010 Rmu_sc0001621.1_g000005 Rmu_sc0001918.1_g000014 Rmu_sc0002666.1_g000007 Rmu_sc0002822.1_g000020 Rmu_sc0002822.1_g000031 Rmu_sc0004110.1_g000004 Rmu_ssc0000189.1_g000051
rosa_roxburghii	Rroxscaffold_3G00230290 Rroxscaffold_3G00230310 Rroxscaffold_3G00239390
rosa_rugosa	Rorug07G0193900 Rorug07G0259200 Rorug07G0259700 Rorug07G0259900 Rorug07G0260000
rosa_samantha	Rh7AG334900 Rh7AG408700 Rh7AG409300 Rh7AG409800 Rh7BG325900 Rh7BG387800 Rh7BG388100 Rh7BG388200 Rh7BG388600 Rh7CG352600 Rh7CG427700
rosa_wichuraiana	Rw0G018580 Rw0G022570 Rw7G028550 Rw7G033930 Rw7G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	62, 484
AccB1I	GGYRCC	1 cut(s)	556
AccI	GTMKAC	1 cut(s)	276
AccII	CGCG	2 cut(s)	127, 259
AciI	CCGC	1 cut(s)	257
AclI	AACGTT	1 cut(s)	218
AdeI	CACNNNGTG	1 cut(s)	379
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	3 cut(s)	164, 263, 286
AflIII	ACRYGT	1 cut(s)	357
AgsI	TTSAA	6 cut(s)	145, 182, 316, 337, 639, 712
AjnI	CCWGG	1 cut(s)	560
AluBI	AGCT	3 cut(s)	299, 425, 440
AluI	AGCT	3 cut(s)	299, 425, 440
Alw21I	GWGCWC	1 cut(s)	325
AlwNI	CAGNNNCTG	1 cut(s)	77
AoxI	GGCC	3 cut(s)	147, 489, 563
ApeKI	GCWGC	2 cut(s)	299, 539
Asp700I	GAANNNNTTC	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	3 cut(s)	74, 98, 564
AsuHPI	GGTGA	3 cut(s)	422, 427, 689
AvaII	GGWCC	2 cut(s)	74, 98
BaeGI	GKGCMC	1 cut(s)	375
BanI	GGYRCC	1 cut(s)	556
Bbv12I	GWGCWC	1 cut(s)	325
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	286, 526
BciT130I	CCWGG	1 cut(s)	562
BfaI	CTAG	1 cut(s)	600
BfuAI	ACCTGC	2 cut(s)	62, 484
BglII	AGATCT	1 cut(s)	717
BisI	GCNGC	2 cut(s)	300, 540
BlsI	GCNGC	2 cut(s)	301, 541
Bme1390I	CCNGG	1 cut(s)	562
Bme18I	GGWCC	2 cut(s)	74, 98
BmgT120I	GGNCC	3 cut(s)	74, 98, 564
BmiI	GGNNCC	2 cut(s)	474, 558
BmrFI	CCNGG	1 cut(s)	562
BmrI	ACTGGG	2 cut(s)	16, 416
BmsI	GCATC	1 cut(s)	220
BmuI	ACTGGG	2 cut(s)	16, 416
Bpu10I	CCTNAGC	2 cut(s)	291, 543
BsaAI	YACGTR	1 cut(s)	360
BsaJI	CCNNGG	3 cut(s)	468, 560, 567
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 263, 286
Bse1I	ACTGG	2 cut(s)	22, 411
Bse3DI	GCAATG	2 cut(s)	120, 206
BseBI	CCWGG	1 cut(s)	562
BseDI	CCNNGG	3 cut(s)	468, 560, 567
BseGI	GGATG	1 cut(s)	622
BseLI	CCNNNNNNNGG	3 cut(s)	164, 263, 286
BseMI	GCAATG	2 cut(s)	120, 206
BseMII	CTCAG	2 cut(s)	282, 557
BseNI	ACTGG	2 cut(s)	22, 411
BseRI	GAGGAG	1 cut(s)	566
BseSI	GKGCMC	1 cut(s)	375
BseXI	GCAGC	2 cut(s)	286, 526
Bsh1236I	CGCG	2 cut(s)	127, 259
BshFI	GGCC	3 cut(s)	149, 491, 565
BshNI	GGYRCC	1 cut(s)	556
BsiHKAI	GWGCWC	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	287
BslI	CCNNNNNNNGG	3 cut(s)	164, 263, 286
BsmI	GAATGC	1 cut(s)	707
BsnI	GGCC	3 cut(s)	149, 491, 565
Bsp1286I	GDGCHC	2 cut(s)	325, 375
Bsp143I	GATC	2 cut(s)	586, 717
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	3 cut(s)	149, 491, 565
BspCNI	CTCAG	2 cut(s)	283, 556
BspFNI	CGCG	2 cut(s)	127, 259
BspLI	GGNNCC	2 cut(s)	474, 558
BspMI	ACCTGC	2 cut(s)	62, 484
BspT107I	GGYRCC	1 cut(s)	556
BsrDI	GCAATG	2 cut(s)	120, 206
BsrI	ACTGG	2 cut(s)	22, 411
BssECI	CCNNGG	3 cut(s)	468, 560, 567
BssMI	GATC	2 cut(s)	586, 717
BssT1I	CCWWGG	2 cut(s)	468, 567
Bst2UI	CCWGG	1 cut(s)	562
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	3 cut(s)	311, 528, 543
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstBAI	YACGTR	1 cut(s)	360
BstDEI	CTNAG	3 cut(s)	291, 364, 543
BstF5I	GGATG	1 cut(s)	622
BstFNI	CGCG	2 cut(s)	127, 259
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	2 cut(s)	589, 720
BstMBI	GATC	2 cut(s)	586, 717
BstMWI	GCNNNNNNNGC	3 cut(s)	296, 329, 463
BstNI	CCWGG	1 cut(s)	562
BstSCI	CCNGG	1 cut(s)	560
BstSLI	GKGCMC	1 cut(s)	375
BstUI	CGCG	2 cut(s)	127, 259
BstV1I	GCAGC	2 cut(s)	286, 526
BstX2I	RGATCY	1 cut(s)	717
BstYI	RGATCY	1 cut(s)	717
BsuRI	GGCC	3 cut(s)	149, 491, 565
BtsCI	GGATG	1 cut(s)	622
BtsIMutI	CAGTG	1 cut(s)	323
BveI	ACCTGC	2 cut(s)	62, 484
CaiI	CAGNNNCTG	1 cut(s)	77
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	3 cut(s)	74, 98, 564
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	1 cut(s)	704
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	3 cut(s)	291, 364, 543
DpnI	GATC	2 cut(s)	588, 719
DpnII	GATC	2 cut(s)	586, 717
DraIII	CACNNNGTG	1 cut(s)	379
Eam1104I	CTCTTC	3 cut(s)	311, 528, 543
EarI	CTCTTC	3 cut(s)	311, 528, 543
Eco130I	CCWWGG	2 cut(s)	468, 567
Eco32I	GATATC	1 cut(s)	394
Eco47I	GGWCC	2 cut(s)	74, 98
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	560
EcoRV	GATATC	1 cut(s)	394
EcoT14I	CCWWGG	2 cut(s)	468, 567
EcoT22I	ATGCAT	1 cut(s)	709
ErhI	CCWWGG	2 cut(s)	468, 567
FaeI	CATG	1 cut(s)	707
FaiI	YATR	7 cut(s)	62, 132, 165, 186, 254, 401, 705
FalI	AAGNNNNNCTT	4 cut(s)	638, 670, 704, 736
FatI	CATG	1 cut(s)	703
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	2 cut(s)	300, 540
FokI	GGATG	1 cut(s)	629
Fsp4HI	GCNGC	2 cut(s)	300, 540
FspBI	CTAG	1 cut(s)	600
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	2 cut(s)	300, 540
HaeIII	GGCC	3 cut(s)	149, 491, 565
HapII	CCGG	1 cut(s)	287
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	1 cut(s)	707
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HinfI	GANTC	6 cut(s)	16, 428, 577, 610, 680, 691
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	3 cut(s)	422, 427, 689
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188III	TCNNGA	3 cut(s)	545, 584, 614
Hpy8I	GTNNAC	1 cut(s)	277
HpyAV	CCTTC	5 cut(s)	43, 139, 290, 468, 490
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	2 cut(s)	218, 359
HpyCH4V	TGCA	6 cut(s)	71, 215, 272, 302, 479, 707
HpyF10VI	GCNNNNNNNGC	3 cut(s)	296, 329, 463
HpyF3I	CTNAG	3 cut(s)	291, 364, 543
HpySE526I	ACGT	2 cut(s)	218, 359
Hsp92II	CATG	1 cut(s)	707
HspAI	GCGC	1 cut(s)	125
Kzo9I	GATC	2 cut(s)	586, 717
LmnI	GCTCC	1 cut(s)	196
Lsp1109I	GCAGC	2 cut(s)	286, 526
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	2 cut(s)	218, 359
MaeIII	GTNAC	2 cut(s)	133, 379
MalI	GATC	2 cut(s)	588, 719
MboI	GATC	2 cut(s)	586, 717
MboII	GAAGA	6 cut(s)	162, 300, 328, 517, 545, 560
MflI	RGATCY	1 cut(s)	717
MhlI	GDGCHC	2 cut(s)	325, 375
MluCI	AATT	2 cut(s)	303, 729
MlyI	GAGTC	2 cut(s)	10, 685
MmeI	TCCRAC	2 cut(s)	63, 378
Mph1103I	ATGCAT	1 cut(s)	709
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	1 cut(s)	728
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	562
Mva1269I	GAATGC	1 cut(s)	707
MvaI	CCWGG	1 cut(s)	562
MvnI	CGCG	2 cut(s)	127, 259
MwoI	GCNNNNNNNGC	3 cut(s)	296, 329, 463
NdeII	GATC	2 cut(s)	586, 717
NlaIII	CATG	1 cut(s)	707
NlaIV	GGNNCC	2 cut(s)	474, 558
NmuCI	GTSAC	1 cut(s)	379
NsiI	ATGCAT	1 cut(s)	709
PctI	GAATGC	1 cut(s)	707
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	4 cut(s)	428, 577, 610, 680
PkrI	GCNGC	2 cut(s)	301, 541
PleI	GAGTC	2 cut(s)	10, 685
PpsI	GAGTC	2 cut(s)	10, 685
Ppu21I	YACGTR	1 cut(s)	360
PpuMI	RGGWCCY	1 cut(s)	74
Psp1406I	AACGTT	1 cut(s)	218
Psp5II	RGGWCCY	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	560
PspN4I	GGNNCC	2 cut(s)	474, 558
PspPI	GGNCC	3 cut(s)	74, 98, 564
PspPPI	RGGWCCY	1 cut(s)	74
PstNI	CAGNNNCTG	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	717
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SaqAI	TTAA	1 cut(s)	728
SatI	GCNGC	2 cut(s)	300, 540
Sau3AI	GATC	2 cut(s)	586, 717
Sau96I	GGNCC	3 cut(s)	74, 98, 564
SchI	GAGTC	2 cut(s)	10, 685
ScrFI	CCNGG	1 cut(s)	562
SduI	GDGCHC	2 cut(s)	325, 375
SfaNI	GCATC	1 cut(s)	220
SinI	GGWCC	2 cut(s)	74, 98
Sse9I	AATT	2 cut(s)	303, 729
SsiI	CCGC	1 cut(s)	257
SspI	AATATT	1 cut(s)	238
SspMI	CTAG	1 cut(s)	600
StyD4I	CCNGG	1 cut(s)	560
StyI	CCWWGG	2 cut(s)	468, 567
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	2 cut(s)	221, 362
TaqI	TCGA	1 cut(s)	8
TasI	AATT	2 cut(s)	303, 729
TfiI	GAWTC	4 cut(s)	428, 577, 610, 680
Tru1I	TTAA	1 cut(s)	728
Tru9I	TTAA	1 cut(s)	728
TscAI	CASTG	1 cut(s)	330
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	2 cut(s)	299, 539
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	4 cut(s)	50, 241, 633, 692
TspGWI	ACGGA	1 cut(s)	647
TspRI	CASTG	1 cut(s)	330
VpaK11BI	GGWCC	2 cut(s)	74, 98
XcmI	CCANNNNNNNNNTGG	1 cut(s)	49
XmiI	GTMKAC	1 cut(s)	276
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	1 cut(s)	600
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.